Wall clock time and date at job start Mon Mar 30 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99334 * 2 1 4 4 C 1.50701 * 109.47322 * 269.72058 * 3 2 1 5 5 C 1.33640 * 126.03449 * 90.00047 * 4 3 2 6 6 N 1.31782 * 114.49818 * 180.02562 * 5 4 3 7 7 C 1.29025 * 117.12669 * 0.02562 * 6 5 4 8 8 S 1.70981 * 110.16608 * 359.71741 * 7 6 5 9 9 C 1.34769 * 120.00272 * 179.72064 * 2 1 3 10 10 O 1.21442 * 120.00320 * 174.33505 * 9 2 1 11 11 C 1.48833 * 120.00246 * 354.34292 * 9 2 1 12 12 O 1.21503 * 119.99800 * 354.15602 * 11 9 2 13 13 N 1.34778 * 120.00058 * 174.16179 * 11 9 2 14 14 C 1.36127 * 119.99761 * 179.97438 * 13 11 9 15 15 H 1.08002 * 119.99937 * 0.02562 * 14 13 11 16 16 C 1.39583 * 119.99960 * 179.97438 * 14 13 11 17 17 N 1.31004 * 119.99909 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99937 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47131 * 89.99834 * 18 16 14 20 20 H 1.48494 * 109.47077 * 209.99914 * 18 16 14 21 21 H 1.48505 * 109.47182 * 329.99979 * 18 16 14 22 22 H 1.09005 * 109.47086 * 265.42816 * 1 2 3 23 23 H 1.09000 * 109.47679 * 25.42807 * 1 2 3 24 24 H 1.09007 * 109.46847 * 145.43113 * 1 2 3 25 25 H 1.08991 * 109.47742 * 29.72537 * 3 2 1 26 26 H 1.09007 * 109.46952 * 149.72453 * 3 2 1 27 27 H 1.07994 * 122.75264 * 0.02562 * 5 4 3 28 28 H 1.08003 * 124.91788 * 180.02562 * 7 6 5 29 29 H 0.96995 * 120.00047 * 359.97438 * 13 11 9 30 30 H 0.97008 * 120.00318 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1973 1.2688 0.0000 4 6 2.4545 1.7005 -1.4208 5 6 1.6527 2.4659 -2.1672 6 7 2.1010 2.7035 -3.3835 7 6 3.2360 2.1808 -3.7047 8 16 3.8682 1.2901 -2.3891 9 6 2.1389 -1.1671 0.0057 10 8 3.3489 -1.1702 -0.0981 11 6 1.4003 -2.4523 0.1390 12 8 0.2035 -2.4462 0.3491 13 7 2.0589 -3.6228 0.0269 14 6 1.3834 -4.7983 0.1493 15 1 0.3196 -4.7929 0.3359 16 6 2.0653 -6.0106 0.0327 17 7 1.4151 -7.1418 0.1500 18 14 3.9051 -6.0199 -0.2908 19 1 4.6351 -6.0187 1.0024 20 1 4.2660 -7.2367 -1.0618 21 1 4.2768 -4.8117 -1.0702 22 1 -0.3633 -0.0819 1.0244 23 1 -0.3634 0.9281 -0.4412 24 1 -0.3633 -0.8463 -0.5831 25 1 1.6062 2.0296 0.5095 26 1 3.1477 1.1398 0.5181 27 1 0.7143 2.8576 -1.8036 28 1 3.7195 2.2939 -4.6638 29 1 3.0142 -3.6277 -0.1411 30 1 1.8891 -7.9844 0.0693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400352034.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:05 Heat of formation + Delta-G solvation = -27.438231 kcal Electronic energy + Delta-G solvation = -18026.401177 eV Core-core repulsion = 14948.742547 eV Total energy + Delta-G solvation = -3077.658631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62129 -40.52823 -39.25750 -37.24654 -36.01647 -33.94736 -32.49958 -28.67544 -28.25170 -27.01196 -25.55601 -23.45926 -21.41287 -21.07192 -20.10231 -19.11641 -18.34517 -17.86472 -17.15992 -17.00875 -16.20284 -16.15248 -15.42249 -15.14823 -14.96087 -14.86001 -14.70425 -14.41859 -14.08622 -13.74436 -13.42066 -13.24175 -13.01517 -12.55705 -12.33321 -12.07216 -11.97016 -11.67141 -10.65402 -10.46903 -10.45885 -10.05015 -9.95905 -9.83857 -8.61772 -6.14989 -0.32061 0.42675 0.53060 0.86360 1.28006 1.31941 1.37479 1.58501 1.97243 2.09826 2.26084 2.90366 3.06849 3.45140 3.70976 3.87087 4.04507 4.30829 4.38770 4.46080 4.70048 4.80002 5.08365 5.18827 5.26967 5.39540 5.75666 5.95495 6.28187 6.57589 6.70199 6.82153 7.15754 7.63622 8.52777 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.005371 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.504365 B = 5212.324091 C = 5837.344253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.583 5.583 3 C 0.191 3.809 4 C -0.252 4.252 5 C 0.045 3.955 6 N -0.502 5.502 7 C 0.016 3.984 8 S 0.135 5.865 9 C 0.516 3.484 10 O -0.551 6.551 11 C 0.406 3.594 12 O -0.588 6.588 13 N -0.535 5.535 14 C -0.336 4.336 15 H 0.079 0.921 16 C 0.011 3.989 17 N -0.894 5.894 18 Si 0.945 3.055 19 H -0.253 1.253 20 H -0.258 1.258 21 H -0.248 1.248 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.065 0.935 25 H 0.144 0.856 26 H 0.091 0.909 27 H 0.198 0.802 28 H 0.226 0.774 29 H 0.391 0.609 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.010 18.813 -3.945 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.315 5.315 3 C 0.068 3.932 4 C -0.375 4.375 5 C -0.108 4.108 6 N -0.216 5.216 7 C -0.281 4.281 8 S 0.388 5.612 9 C 0.301 3.699 10 O -0.429 6.429 11 C 0.191 3.809 12 O -0.475 6.475 13 N -0.174 5.174 14 C -0.465 4.465 15 H 0.097 0.903 16 C -0.193 4.193 17 N -0.531 5.531 18 Si 0.765 3.235 19 H -0.177 1.177 20 H -0.182 1.182 21 H -0.172 1.172 22 H 0.081 0.919 23 H 0.118 0.882 24 H 0.084 0.916 25 H 0.162 0.838 26 H 0.110 0.890 27 H 0.215 0.785 28 H 0.243 0.757 29 H 0.227 0.773 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.481 18.346 -4.134 19.892 hybrid contribution -0.044 -0.375 0.054 0.381 sum 6.438 17.971 -4.079 19.521 Atomic orbital electron populations 1.22119 0.76481 1.03731 1.03208 1.47753 1.08854 1.04251 1.70619 1.20045 0.99183 0.84649 0.89361 1.26482 0.99632 1.07637 1.03737 1.22139 1.01765 0.98682 0.88170 1.66418 1.13176 1.23818 1.18152 1.28980 0.95459 0.98417 1.05209 1.84631 1.22017 1.47795 1.06722 1.20055 0.87001 0.85655 0.77228 1.90670 1.14273 1.87746 1.50257 1.19629 0.88000 0.85039 0.88214 1.90585 1.15096 1.86831 1.54998 1.41718 1.10695 1.05148 1.59846 1.19147 0.95422 0.82669 1.49312 0.90318 1.26034 1.04421 0.93690 0.95193 1.69543 1.39553 0.98711 1.45313 0.85633 0.77366 0.80064 0.80433 1.17663 1.18196 1.17247 0.91892 0.88194 0.91595 0.83814 0.89042 0.78516 0.75746 0.77285 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.33 9.23 127.77 1.18 3.51 16 2 N -0.58 -17.31 2.86 -853.42 -2.44 -19.75 16 3 C 0.19 4.13 5.87 85.63 0.50 4.63 16 4 C -0.25 -5.68 6.18 24.64 0.15 -5.53 16 5 C 0.05 0.94 11.25 83.66 0.94 1.88 16 6 N -0.50 -11.72 10.54 -203.74 -2.15 -13.87 16 7 C 0.02 0.32 12.23 130.65 1.60 1.92 16 8 S 0.14 3.12 23.22 -56.49 -1.31 1.81 16 9 C 0.52 20.13 7.70 87.08 0.67 20.80 16 10 O -0.55 -22.10 16.12 -3.53 -0.06 -22.15 16 11 C 0.41 19.35 7.63 87.08 0.66 20.01 16 12 O -0.59 -30.26 12.93 -3.73 -0.05 -30.30 16 13 N -0.54 -26.96 5.06 -308.86 -1.56 -28.52 16 14 C -0.34 -19.22 10.16 84.35 0.86 -18.36 16 15 H 0.08 5.15 7.37 -2.91 -0.02 5.13 16 16 C 0.01 0.62 5.51 85.14 0.47 1.08 16 17 N -0.89 -50.67 13.94 21.76 0.30 -50.37 16 18 Si 0.95 39.20 27.74 68.60 1.90 41.11 16 19 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.25 -9.74 6.53 99.48 0.65 -9.09 16 22 H 0.06 1.70 8.11 -2.38 -0.02 1.68 16 23 H 0.10 1.80 8.04 -2.39 -0.02 1.78 16 24 H 0.07 2.29 5.93 -2.38 -0.01 2.28 16 25 H 0.14 1.89 8.07 -2.39 -0.02 1.87 16 26 H 0.09 2.11 7.51 -2.38 -0.02 2.09 16 27 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 28 H 0.23 2.84 8.06 -2.91 -0.02 2.81 16 29 H 0.39 18.13 5.23 -92.71 -0.49 17.65 16 30 H 0.29 14.83 8.30 -92.70 -0.77 14.06 16 Total: -1.00 -69.96 283.58 2.33 -67.63 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.65 Total: 24.49 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 7.03 Total: 29.94 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -5.84 Total: -112.52 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.11 Total: -52.46 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.90 Total: 41.11 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -69.96 2.33 -67.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400352034.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.196 kcal (2) G-P(sol) polarization free energy of solvation -69.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds