Wall clock time and date at job start Mon Mar 30 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48501 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46972 * 300.00091 * 3 2 1 6 6 H 1.48494 * 109.47292 * 60.00239 * 3 2 1 7 7 C 1.37870 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00503 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47471 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00112 * 180.02562 * 10 9 7 12 12 O 1.21591 * 120.00377 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00347 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00628 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47735 * 179.97438 * 14 13 11 16 16 C 1.38233 * 119.60308 * 94.99775 * 15 14 13 17 17 C 1.38613 * 119.17625 * 180.02562 * 16 15 14 18 18 C 1.38780 * 118.40577 * 0.25575 * 17 16 15 19 19 Cl 1.73608 * 120.42624 * 179.72626 * 18 17 16 20 20 C 1.38302 * 119.13930 * 359.50003 * 18 17 16 21 21 N 1.31846 * 119.60674 * 275.02279 * 15 14 13 22 22 H 0.97003 * 119.99627 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46703 * 60.00382 * 9 7 2 24 24 H 1.08999 * 109.47167 * 300.00505 * 9 7 2 25 25 H 0.97005 * 120.00283 * 0.02562 * 10 9 7 26 26 H 0.97005 * 120.00049 * 359.97438 * 13 11 10 27 27 H 1.09003 * 109.46854 * 59.99555 * 14 13 11 28 28 H 1.09000 * 109.46868 * 300.00239 * 14 13 11 29 29 H 1.08002 * 120.41515 * 0.04798 * 16 15 14 30 30 H 1.08002 * 120.79267 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.62475 * 180.23223 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5582 -5.1055 -0.0011 13 7 2.6294 -5.9078 -0.0005 14 6 2.1411 -7.2890 -0.0005 15 6 3.3131 -8.2362 -0.0005 16 6 3.7783 -8.7469 1.1968 17 6 4.8573 -9.6171 1.1865 18 6 5.4345 -9.9387 -0.0339 19 17 6.7926 -11.0177 -0.1070 20 6 4.9108 -9.3922 -1.1914 21 7 3.8828 -8.5676 -1.1425 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 3.1566 -3.4355 -0.0002 26 1 3.5831 -5.7306 -0.0002 27 1 1.5358 -7.4603 -0.8907 28 1 1.5351 -7.4601 0.8892 29 1 3.3069 -8.4716 2.1287 30 1 5.2423 -10.0312 2.1067 31 1 5.3515 -9.6401 -2.1457 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426438273.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:13 Heat of formation + Delta-G solvation = -6.571743 kcal Electronic energy + Delta-G solvation = -16920.526106 eV Core-core repulsion = 13841.728608 eV Total energy + Delta-G solvation = -3078.797498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76250 -39.08689 -37.11917 -34.89906 -33.99625 -32.90583 -32.36489 -31.38477 -27.65165 -26.08242 -24.16270 -22.82591 -22.04083 -20.21005 -18.27881 -17.47424 -17.12284 -16.44905 -15.80766 -15.54545 -14.86082 -14.77813 -14.40332 -14.10949 -13.71060 -13.37124 -13.08969 -12.85590 -12.41529 -12.25459 -11.95087 -11.72186 -11.59822 -10.91540 -10.89581 -10.29476 -10.29217 -9.94349 -9.58217 -9.33828 -9.20630 -8.81814 -8.68384 -7.75430 -6.13966 -4.20287 0.40272 0.72695 1.56670 3.02507 3.25284 3.32259 3.35364 3.59290 3.86218 3.96109 4.23541 4.27817 4.34822 4.48698 4.78255 5.13119 5.20307 5.22284 5.33399 5.44931 5.68427 5.77324 6.05700 6.75389 7.10463 7.46199 7.52291 7.56206 7.59051 7.90779 8.05033 8.77863 8.93989 9.33086 9.48964 10.96354 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.002917 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.680128 B = 9596.870225 C =10047.872141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.728 5.728 11 C 0.696 3.304 12 O -0.599 6.599 13 N -0.752 5.752 14 C 0.192 3.808 15 C 0.120 3.880 16 C -0.140 4.140 17 C -0.067 4.067 18 C -0.089 4.089 19 Cl -0.056 7.056 20 C 0.116 3.884 21 N -0.452 5.452 22 H 0.265 0.735 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.387 0.613 26 H 0.392 0.608 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.186 -21.131 1.909 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.380 5.380 11 C 0.395 3.605 12 O -0.478 6.478 13 N -0.410 5.410 14 C 0.067 3.933 15 C -0.018 4.018 16 C -0.160 4.160 17 C -0.093 4.093 18 C -0.118 4.118 19 Cl -0.027 7.027 20 C -0.043 4.043 21 N -0.161 5.161 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.219 0.781 26 H 0.225 0.775 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.638 -20.894 1.125 23.943 hybrid contribution 1.865 0.535 0.776 2.090 sum 13.503 -20.360 1.901 24.504 Atomic orbital electron populations 1.69994 1.06077 1.27138 1.49091 1.24947 0.94917 0.99403 0.94800 0.86358 0.79803 0.82993 0.77720 1.19676 1.20815 1.20828 1.21266 0.93304 0.90431 1.52922 0.91911 1.18999 0.87772 0.81020 0.97678 1.45708 1.10840 1.04306 1.77116 1.16081 0.85050 0.80968 0.78379 1.90882 1.14114 1.84149 1.58669 1.45020 1.08992 1.04230 1.82738 1.19831 0.91042 0.78493 1.03927 1.21520 0.96044 0.95894 0.88375 1.22130 0.96624 0.97218 1.00044 1.21584 0.94604 0.95844 0.97303 1.22179 0.94186 0.98918 0.96563 1.98392 1.42834 1.62760 1.98721 1.22855 0.91911 0.92073 0.97463 1.67725 1.07842 1.11368 1.29128 0.92525 0.95653 0.95676 0.78137 0.77510 0.89769 0.89877 0.83250 0.83488 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.27 7.16 5.43 -5.20 -0.03 7.13 16 10 N -0.73 -15.66 5.55 -66.42 -0.37 -16.03 16 11 C 0.70 14.35 8.57 -86.92 -0.74 13.60 16 12 O -0.60 -14.89 16.34 5.29 0.09 -14.80 16 13 N -0.75 -11.29 5.55 -66.42 -0.37 -11.66 16 14 C 0.19 2.48 5.98 -5.20 -0.03 2.45 16 15 C 0.12 1.27 6.15 -82.59 -0.51 0.77 16 16 C -0.14 -1.15 9.72 -39.44 -0.38 -1.53 16 17 C -0.07 -0.49 9.98 -39.24 -0.39 -0.88 16 18 C -0.09 -0.72 6.34 -39.36 -0.25 -0.97 16 19 Cl -0.06 -0.41 28.99 -51.86 -1.50 -1.91 16 20 C 0.12 1.05 10.99 -17.51 -0.19 0.86 16 21 N -0.45 -5.11 10.27 -9.45 -0.10 -5.21 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.39 7.14 8.34 -40.82 -0.34 6.80 16 26 H 0.39 4.98 8.48 -40.82 -0.35 4.64 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 29 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -33.17 298.11 -8.16 -41.33 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.17 Total: 5.39 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.95 Total: 7.98 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.10 Total: -58.40 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.09 Total: -14.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.17 -8.16 -41.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438273.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.758 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds