Wall clock time and date at job start Mon Mar 30 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48501 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46972 * 300.00091 * 3 2 1 6 6 H 1.48494 * 109.47292 * 60.00239 * 3 2 1 7 7 C 1.37870 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00503 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47471 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00112 * 180.02562 * 10 9 7 12 12 O 1.21591 * 120.00377 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00347 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00628 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47735 * 179.97438 * 14 13 11 16 16 C 1.38233 * 119.60308 * 94.99775 * 15 14 13 17 17 C 1.38613 * 119.17625 * 180.02562 * 16 15 14 18 18 C 1.38780 * 118.40577 * 0.25575 * 17 16 15 19 19 Cl 1.73608 * 120.42624 * 179.72626 * 18 17 16 20 20 C 1.38302 * 119.13930 * 359.50003 * 18 17 16 21 21 N 1.31846 * 119.60674 * 275.02279 * 15 14 13 22 22 H 0.97003 * 119.99627 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46703 * 60.00382 * 9 7 2 24 24 H 1.08999 * 109.47167 * 300.00505 * 9 7 2 25 25 H 0.97005 * 120.00283 * 0.02562 * 10 9 7 26 26 H 0.97005 * 120.00049 * 359.97438 * 13 11 10 27 27 H 1.09003 * 109.46854 * 59.99555 * 14 13 11 28 28 H 1.09000 * 109.46868 * 300.00239 * 14 13 11 29 29 H 1.08002 * 120.41515 * 0.04798 * 16 15 14 30 30 H 1.08002 * 120.79267 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.62475 * 180.23223 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5582 -5.1055 -0.0011 13 7 2.6294 -5.9078 -0.0005 14 6 2.1411 -7.2890 -0.0005 15 6 3.3131 -8.2362 -0.0005 16 6 3.7783 -8.7469 1.1968 17 6 4.8573 -9.6171 1.1865 18 6 5.4345 -9.9387 -0.0339 19 17 6.7926 -11.0177 -0.1070 20 6 4.9108 -9.3922 -1.1914 21 7 3.8828 -8.5676 -1.1425 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 3.1566 -3.4355 -0.0002 26 1 3.5831 -5.7306 -0.0002 27 1 1.5358 -7.4603 -0.8907 28 1 1.5351 -7.4601 0.8892 29 1 3.3069 -8.4716 2.1287 30 1 5.2423 -10.0312 2.1067 31 1 5.3515 -9.6401 -2.1457 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426438273.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:12 Heat of formation + Delta-G solvation = -31.454894 kcal Electronic energy + Delta-G solvation = -16921.605120 eV Core-core repulsion = 13841.728608 eV Total energy + Delta-G solvation = -3079.876513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.55442 -40.68598 -37.75632 -36.39265 -35.77517 -34.34489 -33.57735 -32.41980 -29.41603 -27.41458 -24.83863 -24.60682 -23.10102 -21.89814 -19.92719 -18.39624 -17.95901 -17.83335 -17.44338 -16.58517 -16.46575 -16.41582 -15.49793 -15.19285 -14.82345 -14.67048 -14.40711 -14.09668 -14.00640 -13.51936 -13.16242 -12.98792 -12.84799 -12.73475 -12.24490 -12.20457 -11.43023 -11.31979 -10.93897 -10.80129 -10.64860 -10.30843 -9.99929 -9.59874 -8.26886 -6.42918 -0.31240 0.09224 0.94374 1.44823 1.46273 1.59375 1.84523 2.24251 2.39853 2.61804 3.06729 3.08301 3.53613 3.58157 3.69502 3.84826 4.06737 4.47291 4.62235 4.64442 4.81517 4.95468 5.10113 5.29965 5.36702 5.43350 5.50607 5.67801 5.86947 6.21927 6.68914 6.74827 7.25253 7.29188 7.70868 8.85703 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.002917 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.680128 B = 9596.870225 C =10047.872141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.695 3.305 12 O -0.645 6.645 13 N -0.727 5.727 14 C 0.193 3.807 15 C 0.105 3.895 16 C -0.131 4.131 17 C -0.061 4.061 18 C -0.086 4.086 19 Cl -0.046 7.046 20 C 0.107 3.893 21 N -0.480 5.480 22 H 0.269 0.731 23 H -0.014 1.014 24 H -0.011 1.011 25 H 0.404 0.596 26 H 0.407 0.593 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.170 0.830 30 H 0.175 0.825 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.943 -21.597 2.678 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.591 4.591 8 H 0.101 0.899 9 C 0.161 3.839 10 N -0.376 5.376 11 C 0.395 3.605 12 O -0.527 6.527 13 N -0.384 5.384 14 C 0.068 3.932 15 C -0.033 4.033 16 C -0.151 4.151 17 C -0.087 4.087 18 C -0.116 4.116 19 Cl -0.017 7.017 20 C -0.051 4.051 21 N -0.190 5.190 22 H 0.078 0.922 23 H 0.004 0.996 24 H 0.007 0.993 25 H 0.239 0.761 26 H 0.243 0.757 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.187 0.813 30 H 0.193 0.807 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 14.475 -21.418 1.895 25.920 hybrid contribution 1.045 0.515 0.527 1.278 sum 15.520 -20.903 2.422 26.147 Atomic orbital electron populations 1.70151 1.08231 1.28484 1.50066 1.26055 0.95789 1.03830 0.93934 0.85097 0.79028 0.77320 0.77663 1.17722 1.20536 1.20378 1.21629 0.94288 0.90499 1.52715 0.89913 1.18432 0.88084 0.83224 0.94119 1.45296 1.10919 1.03779 1.77602 1.16203 0.84959 0.81450 0.77898 1.90850 1.16478 1.84856 1.60542 1.44772 1.08989 1.03999 1.80676 1.19883 0.92335 0.77491 1.03452 1.21161 0.96041 0.96660 0.89402 1.22282 0.96494 0.96570 0.99762 1.21902 0.93785 0.94942 0.98085 1.22263 0.94174 0.98495 0.96632 1.98402 1.42249 1.62321 1.98716 1.23084 0.91521 0.91879 0.98646 1.67615 1.08927 1.12585 1.29862 0.92242 0.99633 0.99310 0.76079 0.75725 0.91665 0.89044 0.81261 0.80740 0.80225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.99 42.46 29.54 68.60 2.03 44.48 16 4 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -30.32 9.28 25.60 0.24 -30.08 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 9 C 0.28 15.88 5.43 85.63 0.46 16.34 16 10 N -0.72 -31.45 5.55 -482.31 -2.68 -34.13 16 11 C 0.70 29.13 8.57 179.06 1.53 30.67 16 12 O -0.64 -33.23 16.34 -4.00 -0.07 -33.30 16 13 N -0.73 -21.47 5.55 -482.31 -2.68 -24.15 16 14 C 0.19 4.93 5.98 85.63 0.51 5.44 16 15 C 0.10 2.10 6.15 42.55 0.26 2.36 16 16 C -0.13 -1.83 9.72 22.36 0.22 -1.61 16 17 C -0.06 -0.71 9.98 22.49 0.22 -0.48 16 18 C -0.09 -1.19 6.34 22.41 0.14 -1.05 16 19 Cl -0.05 -0.56 28.99 -2.72 -0.08 -0.63 16 20 C 0.11 1.78 10.99 84.70 0.93 2.71 16 21 N -0.48 -10.42 10.27 -183.80 -1.89 -12.31 16 22 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 23 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 24 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 25 H 0.40 14.57 8.34 -92.70 -0.77 13.80 16 26 H 0.41 9.76 8.48 -92.70 -0.79 8.98 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.19 8.04 -2.39 -0.02 2.17 16 29 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 31 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -73.71 298.11 -0.47 -74.18 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -0.38 Total: 17.00 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 4.99 Total: 24.95 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -6.96 Total: -126.68 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.07 Total: -33.30 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.63 kcal Total: -73.71 -0.47 -74.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426438273.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.721 kcal (2) G-P(sol) polarization free energy of solvation -73.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds