Wall clock time and date at job start Mon Mar 30 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 N 1.33123 * 119.40530 * 8.15285 * 3 2 1 5 5 C 1.31142 * 121.78156 * 180.02562 * 4 3 2 6 6 C 1.41456 * 120.36353 * 0.02562 * 5 4 3 7 7 C 1.40367 * 120.59476 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99917 * 154.83890 * 7 6 5 9 9 C 1.46486 * 120.00163 * 334.84469 * 7 6 5 10 10 N 1.29543 * 120.00568 * 161.28470 * 9 7 6 11 11 Si 1.86809 * 119.99913 * 341.28763 * 9 7 6 12 12 H 1.48498 * 109.47178 * 94.22051 * 11 9 7 13 13 H 1.48499 * 109.46684 * 214.22277 * 11 9 7 14 14 H 1.48496 * 109.46600 * 334.22097 * 11 9 7 15 15 C 1.41569 * 118.80700 * 359.73234 * 6 5 4 16 16 N 1.48021 * 120.81788 * 180.28845 * 15 6 5 17 17 O 1.31693 * 120.00414 * 270.24244 * 16 15 6 18 18 O 1.31707 * 119.99489 * 90.24127 * 16 15 6 19 19 C 1.36789 * 118.36400 * 0.52866 * 15 6 5 20 20 C 1.50694 * 120.25672 * 179.74107 * 19 15 6 21 21 F 1.39903 * 109.46981 * 59.72350 * 20 19 15 22 22 F 1.39904 * 109.47061 * 299.72600 * 20 19 15 23 23 H 1.08004 * 119.81402 * 180.02562 * 5 4 3 24 24 H 0.96993 * 120.00057 * 179.97438 * 10 9 7 25 25 H 1.09000 * 109.47414 * 179.72724 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2221 -1.1471 -0.1645 5 6 4.5324 -1.2004 -0.1717 6 6 5.2969 -0.0224 -0.0019 7 6 6.6997 -0.0738 -0.0093 8 1 7.2706 0.8006 -0.2851 9 6 7.3892 -1.3133 0.3568 10 7 8.6257 -1.4921 0.0145 11 14 6.4853 -2.6363 1.3171 12 1 5.9145 -3.6305 0.3732 13 1 7.4330 -3.3146 2.2374 14 1 5.3898 -2.0153 2.1042 15 6 4.6219 1.2102 0.1695 16 7 5.3777 2.4708 0.3445 17 8 5.7183 2.8723 1.5516 18 8 5.7096 3.1909 -0.7072 19 6 3.2540 1.2067 0.1743 20 6 2.4922 2.4937 0.3593 21 9 2.8258 3.3847 -0.6663 22 9 2.8251 3.0592 1.5949 23 1 5.0305 -2.1490 -0.3081 24 1 9.0823 -2.3127 0.2573 25 1 1.4218 2.2898 0.3297 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514263530.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:05 Heat of formation + Delta-G solvation = -21.361874 kcal Electronic energy + Delta-G solvation = -20295.166010 eV Core-core repulsion = 16528.097389 eV Total energy + Delta-G solvation = -3767.068621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.040 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.92107 -46.89082 -39.98625 -37.89808 -36.23236 -34.91143 -33.62951 -32.94625 -32.39306 -27.92537 -26.80608 -25.28950 -22.70032 -22.17054 -19.49482 -18.87371 -17.92390 -17.54019 -17.08694 -16.81738 -16.48672 -15.86383 -15.80470 -14.67787 -14.21903 -14.04050 -13.74356 -13.51719 -13.24486 -13.11557 -12.76250 -12.61985 -12.54935 -12.23539 -11.97356 -11.67426 -11.04749 -10.81377 -10.71227 -10.56973 -10.30303 -9.96882 -9.86173 -9.30228 -8.97392 -8.20973 -5.80271 0.48772 0.98945 1.30900 1.83996 2.38776 2.52401 2.60756 2.91128 2.96292 3.16324 3.59580 3.67469 4.06376 4.19542 4.27252 4.49821 5.03301 5.14182 5.27363 5.53252 5.62340 5.83131 5.96894 6.44619 6.56733 6.83829 7.13455 7.25853 7.37474 7.77544 8.30187 8.68517 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.009496 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.081808 B = 2947.754005 C = 3994.179631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.293 3.707 3 C 0.017 3.983 4 N -0.393 5.393 5 C 0.038 3.962 6 C 0.038 3.962 7 C -0.317 4.317 8 H 0.114 0.886 9 C 0.065 3.935 10 N -0.695 5.695 11 Si 0.919 3.081 12 H -0.243 1.243 13 H -0.264 1.264 14 H -0.229 1.229 15 C -0.063 4.063 16 N -0.009 5.009 17 O -0.145 6.145 18 O -0.156 6.156 19 C -0.049 4.049 20 C 0.297 3.703 21 F -0.186 7.186 22 F -0.186 7.186 23 H 0.161 0.839 24 H 0.317 0.683 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -2.256 1.320 2.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.021 4.021 3 C -0.112 4.112 4 N -0.099 5.099 5 C -0.139 4.139 6 C 0.031 3.969 7 C -0.342 4.342 8 H 0.131 0.869 9 C -0.172 4.172 10 N -0.310 5.310 11 Si 0.739 3.261 12 H -0.168 1.168 13 H -0.190 1.190 14 H -0.151 1.151 15 C -0.150 4.150 16 N 0.487 4.513 17 O -0.352 6.352 18 O -0.360 6.360 19 C -0.055 4.055 20 C 0.242 3.758 21 F -0.167 7.167 22 F -0.168 7.168 23 H 0.178 0.822 24 H 0.131 0.869 25 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.295 -3.617 1.077 5.010 hybrid contribution 1.292 0.696 0.377 1.516 sum -2.002 -2.921 1.455 3.828 Atomic orbital electron populations 1.81189 1.11374 1.07196 1.12468 1.24853 0.91447 0.93360 0.92399 1.14675 0.85214 0.87827 1.23462 1.66883 1.10501 1.26036 1.06529 1.22674 0.87803 0.96882 1.06572 1.17981 0.94556 0.89196 0.95175 1.21485 0.89802 0.98431 1.24466 0.86858 1.28073 0.95224 0.99396 0.94493 1.68917 1.10956 1.26535 1.24579 0.86159 0.80862 0.78568 0.80469 1.16812 1.18979 1.15147 1.19154 0.88943 0.82832 1.24026 1.50074 0.97628 1.01692 1.01863 1.96219 1.57359 1.75810 1.05829 1.96230 1.58291 1.54268 1.27167 1.19975 0.91477 0.94988 0.99084 1.20534 0.99696 0.82919 0.72604 1.93086 1.94419 1.70074 1.59171 1.93085 1.94433 1.86227 1.43008 0.82240 0.86947 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.37 18.54 41.84 0.78 -7.60 15 2 C 0.29 5.48 13.69 -22.47 -0.31 5.17 15 3 C 0.02 0.33 6.60 -84.78 -0.56 -0.22 15 4 N -0.39 -7.85 10.25 -10.32 -0.11 -7.96 15 5 C 0.04 0.75 8.51 -16.62 -0.14 0.61 15 6 C 0.04 0.81 5.29 -106.60 -0.56 0.25 15 7 C -0.32 -6.74 9.56 -35.46 -0.34 -7.08 15 8 H 0.11 2.63 7.78 -52.48 -0.41 2.22 15 9 C 0.06 1.22 5.59 -15.20 -0.08 1.14 15 10 N -0.69 -13.03 13.89 55.98 0.78 -12.26 15 11 Si 0.92 14.55 24.57 -169.99 -4.18 10.37 15 12 H -0.24 -3.54 6.69 56.52 0.38 -3.16 15 13 H -0.26 -3.92 7.11 56.52 0.40 -3.52 15 14 H -0.23 -3.92 6.83 56.52 0.39 -3.53 15 15 C -0.06 -1.38 6.19 -79.20 -0.49 -1.87 15 16 N -0.01 -0.21 3.07 34.33 0.11 -0.10 15 17 O -0.15 -3.37 19.56 -31.56 -0.62 -3.99 15 18 O -0.16 -3.64 19.53 -31.57 -0.62 -4.25 15 19 C -0.05 -0.99 5.38 -104.55 -0.56 -1.55 15 20 C 0.30 5.51 4.96 36.00 0.18 5.69 15 21 F -0.19 -3.65 16.50 2.25 0.04 -3.61 15 22 F -0.19 -3.64 16.56 2.25 0.04 -3.60 15 23 H 0.16 2.77 4.23 -52.48 -0.22 2.54 15 24 H 0.32 4.99 8.27 -40.82 -0.34 4.65 15 25 H 0.12 1.91 6.43 -51.93 -0.33 1.57 15 LS Contribution 255.56 15.07 3.85 3.85 Total: -1.00 -23.31 255.56 -2.94 -26.25 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -0.14 Total: 0.77 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -2.87 Total: 2.12 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 1.55 Total: -27.91 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -1.23 Total: -8.24 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.07 Total: -7.22 kcal Atomic # 14 Polarization: 14.55 SS G_CDS: -4.18 Total: 10.37 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -23.31 -2.94 -26.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514263530.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.889 kcal (2) G-P(sol) polarization free energy of solvation -23.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds