Wall clock time and date at job start Mon Mar 30 2020 04:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 N 1.33123 * 119.40530 * 8.15285 * 3 2 1 5 5 C 1.31142 * 121.78156 * 180.02562 * 4 3 2 6 6 C 1.41456 * 120.36353 * 0.02562 * 5 4 3 7 7 C 1.40367 * 120.59476 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99917 * 154.83890 * 7 6 5 9 9 C 1.46486 * 120.00163 * 334.84469 * 7 6 5 10 10 N 1.29543 * 120.00568 * 161.28470 * 9 7 6 11 11 Si 1.86809 * 119.99913 * 341.28763 * 9 7 6 12 12 H 1.48498 * 109.47178 * 94.22051 * 11 9 7 13 13 H 1.48499 * 109.46684 * 214.22277 * 11 9 7 14 14 H 1.48496 * 109.46600 * 334.22097 * 11 9 7 15 15 C 1.41569 * 118.80700 * 359.73234 * 6 5 4 16 16 N 1.48021 * 120.81788 * 180.28845 * 15 6 5 17 17 O 1.31693 * 120.00414 * 270.24244 * 16 15 6 18 18 O 1.31707 * 119.99489 * 90.24127 * 16 15 6 19 19 C 1.36789 * 118.36400 * 0.52866 * 15 6 5 20 20 C 1.50694 * 120.25672 * 179.74107 * 19 15 6 21 21 F 1.39903 * 109.46981 * 59.72350 * 20 19 15 22 22 F 1.39904 * 109.47061 * 299.72600 * 20 19 15 23 23 H 1.08004 * 119.81402 * 180.02562 * 5 4 3 24 24 H 0.96993 * 120.00057 * 179.97438 * 10 9 7 25 25 H 1.09000 * 109.47414 * 179.72724 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2221 -1.1471 -0.1645 5 6 4.5324 -1.2004 -0.1717 6 6 5.2969 -0.0224 -0.0019 7 6 6.6997 -0.0738 -0.0093 8 1 7.2706 0.8006 -0.2851 9 6 7.3892 -1.3133 0.3568 10 7 8.6257 -1.4921 0.0145 11 14 6.4853 -2.6363 1.3171 12 1 5.9145 -3.6305 0.3732 13 1 7.4330 -3.3146 2.2374 14 1 5.3898 -2.0153 2.1042 15 6 4.6219 1.2102 0.1695 16 7 5.3777 2.4708 0.3445 17 8 5.7183 2.8723 1.5516 18 8 5.7096 3.1909 -0.7072 19 6 3.2540 1.2067 0.1743 20 6 2.4922 2.4937 0.3593 21 9 2.8258 3.3847 -0.6663 22 9 2.8251 3.0592 1.5949 23 1 5.0305 -2.1490 -0.3081 24 1 9.0823 -2.3127 0.2573 25 1 1.4218 2.2898 0.3297 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514263530.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:04 Heat of formation + Delta-G solvation = -34.201073 kcal Electronic energy + Delta-G solvation = -20295.722759 eV Core-core repulsion = 16528.097389 eV Total energy + Delta-G solvation = -3767.625371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.040 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.44414 -48.42357 -41.59194 -39.65937 -37.76685 -36.40838 -35.45929 -34.54849 -33.95165 -29.57264 -28.36698 -26.94583 -24.27839 -23.73378 -21.13908 -20.43459 -19.46350 -19.33720 -18.63220 -18.38201 -18.04363 -17.44431 -17.29123 -16.29592 -15.77722 -15.59968 -15.27978 -14.96265 -14.78388 -14.63319 -14.26203 -14.12409 -14.06939 -13.75193 -13.50173 -13.05721 -12.60423 -12.54829 -12.38493 -12.08047 -11.82731 -11.66481 -11.41544 -10.87574 -10.53481 -9.64367 -7.41727 -1.33807 -0.58329 -0.27939 0.12398 1.08846 1.19937 1.37100 1.41439 1.53839 1.90042 2.09271 2.19386 2.53882 2.70026 2.71376 3.01769 3.52408 3.60118 3.72643 3.97569 4.03639 4.27937 4.38013 4.74949 5.04183 5.20991 5.52886 5.54130 5.65719 6.25301 6.71614 7.33353 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.009496 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.081808 B = 2947.754005 C = 3994.179631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.301 3.699 3 C 0.023 3.977 4 N -0.399 5.399 5 C 0.053 3.947 6 C 0.030 3.970 7 C -0.332 4.332 8 H 0.081 0.919 9 C 0.045 3.955 10 N -0.714 5.714 11 Si 0.955 3.045 12 H -0.213 1.213 13 H -0.244 1.244 14 H -0.249 1.249 15 C -0.100 4.100 16 N -0.005 5.005 17 O -0.154 6.154 18 O -0.173 6.173 19 C -0.050 4.050 20 C 0.297 3.703 21 F -0.194 7.194 22 F -0.193 7.193 23 H 0.186 0.814 24 H 0.335 0.665 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -4.178 1.614 4.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.013 4.013 3 C -0.104 4.104 4 N -0.106 5.106 5 C -0.126 4.126 6 C 0.023 3.977 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.190 4.190 10 N -0.330 5.330 11 Si 0.772 3.228 12 H -0.136 1.136 13 H -0.168 1.168 14 H -0.172 1.172 15 C -0.186 4.186 16 N 0.491 4.509 17 O -0.361 6.361 18 O -0.375 6.375 19 C -0.057 4.057 20 C 0.242 3.758 21 F -0.175 7.175 22 F -0.174 7.174 23 H 0.202 0.798 24 H 0.150 0.850 25 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.069 -5.526 1.342 6.993 hybrid contribution 1.590 1.289 0.271 2.065 sum -2.479 -4.237 1.613 5.167 Atomic orbital electron populations 1.81214 1.11191 1.07173 1.12203 1.24567 0.90990 0.93347 0.92364 1.14743 0.85589 0.87572 1.22531 1.66959 1.10550 1.25989 1.07096 1.23050 0.87612 0.97102 1.04794 1.18156 0.94619 0.89579 0.95365 1.21479 0.90020 0.98806 1.25384 0.90114 1.28625 0.95730 0.99797 0.94851 1.68860 1.11556 1.27951 1.24642 0.85675 0.79964 0.77099 0.80108 1.13620 1.16760 1.17201 1.19430 0.89711 0.82478 1.26999 1.50257 0.97220 1.01972 1.01499 1.96194 1.57677 1.76169 1.06097 1.96211 1.59035 1.54952 1.27268 1.20158 0.90992 0.96008 0.98507 1.20800 1.00897 0.82015 0.72057 1.93070 1.94610 1.70277 1.59524 1.93069 1.94619 1.86268 1.43442 0.79794 0.85011 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -15.45 18.54 19.00 0.35 -15.10 15 2 C 0.30 10.54 13.69 88.33 1.21 11.75 15 3 C 0.02 0.88 6.60 40.58 0.27 1.15 15 4 N -0.40 -15.07 10.25 -186.56 -1.91 -16.98 15 5 C 0.05 1.95 8.51 85.59 0.73 2.68 15 6 C 0.03 1.26 5.29 -21.15 -0.11 1.15 15 7 C -0.33 -14.25 9.56 24.94 0.24 -14.01 15 8 H 0.08 3.92 7.78 -2.91 -0.02 3.90 15 9 C 0.04 1.64 5.59 87.18 0.49 2.12 15 10 N -0.71 -25.99 13.89 23.20 0.32 -25.67 15 11 Si 0.96 27.08 24.57 68.60 1.69 28.76 15 12 H -0.21 -5.08 6.69 99.48 0.67 -4.41 15 13 H -0.24 -6.16 7.11 99.48 0.71 -5.45 15 14 H -0.25 -7.90 6.83 99.48 0.68 -7.22 15 15 C -0.10 -4.40 6.19 36.86 0.23 -4.18 15 16 N 0.00 -0.22 3.07 -45.32 -0.14 -0.36 15 17 O -0.15 -7.28 19.56 3.53 0.07 -7.21 15 18 O -0.17 -8.29 19.53 3.50 0.07 -8.22 15 19 C -0.05 -1.98 5.38 -19.82 -0.11 -2.09 15 20 C 0.30 10.69 4.96 71.23 0.35 11.05 15 21 F -0.19 -7.49 16.50 44.97 0.74 -6.75 15 22 F -0.19 -7.41 16.56 44.97 0.74 -6.66 15 23 H 0.19 5.79 4.23 -2.91 -0.01 5.78 15 24 H 0.33 9.89 8.27 -92.71 -0.77 9.13 15 25 H 0.15 4.48 6.43 -2.39 -0.02 4.46 15 Total: -1.00 -48.84 255.56 6.46 -42.37 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.24 Total: 6.19 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 3.29 Total: 9.63 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -1.38 Total: -58.11 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.14 Total: -15.43 kcal Atomic # 9 Polarization: -14.90 SS G_CDS: 1.49 Total: -13.41 kcal Atomic # 14 Polarization: 27.08 SS G_CDS: 1.69 Total: 28.76 kcal Total: -48.84 6.46 -42.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514263530.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.173 kcal (2) G-P(sol) polarization free energy of solvation -48.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds