Wall clock time and date at job start Mon Mar 30 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39652 * 119.93153 * 118.60818 * 3 2 1 5 5 C 1.39877 * 120.17856 * 180.02562 * 4 3 2 6 6 C 1.47241 * 119.97181 * 179.97438 * 5 4 3 7 7 O 1.21239 * 119.99800 * 179.97438 * 6 5 4 8 8 C 1.39413 * 120.05285 * 359.69434 * 5 4 3 9 9 C 1.40481 * 119.87258 * 0.53422 * 8 5 4 10 10 C 1.41488 * 120.09111 * 179.76945 * 9 8 5 11 11 H 1.08001 * 120.00454 * 146.81978 * 10 9 8 12 12 C 1.39924 * 120.00122 * 326.81852 * 10 9 8 13 13 N 1.30842 * 119.99686 * 339.10548 * 12 10 9 14 14 Si 1.86793 * 120.00364 * 159.10137 * 12 10 9 15 15 H 1.48504 * 109.47514 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47151 * 300.00157 * 14 12 10 17 17 H 1.48497 * 109.47118 * 60.00075 * 14 12 10 18 18 C 1.39166 * 119.93658 * 298.57620 * 3 2 1 19 19 C 1.50698 * 120.03101 * 359.97438 * 18 3 2 20 20 F 1.39907 * 109.47105 * 272.22529 * 19 18 3 21 21 F 1.39898 * 109.47379 * 32.22665 * 19 18 3 22 22 F 1.39903 * 109.47181 * 152.22656 * 19 18 3 23 23 H 1.07992 * 119.91653 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.99997 * 359.97438 * 6 5 4 25 25 H 1.08000 * 120.06593 * 180.27601 * 8 5 4 26 26 H 0.96994 * 119.99784 * 354.39719 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2646 0.5804 -1.0625 5 6 4.6634 0.5835 -1.0681 6 6 5.3932 1.1956 -2.1909 7 8 6.6055 1.1989 -2.1960 8 6 5.3670 0.0126 -0.0085 9 6 4.6686 -0.5755 1.0591 10 6 5.3780 -1.1605 2.1344 11 1 4.9693 -1.1261 3.1335 12 6 6.6094 -1.7837 1.9035 13 7 6.9201 -2.1927 0.7001 14 14 7.8095 -2.0319 3.3132 15 1 9.0312 -2.7098 2.8099 16 1 8.1772 -0.7130 3.8882 17 1 7.1746 -2.8696 4.3622 18 6 3.2628 -0.5759 1.0591 19 6 2.5089 -1.1998 2.2051 20 9 2.2312 -0.2230 3.1674 21 9 1.3094 -1.7437 1.7332 22 9 3.2860 -2.2118 2.7787 23 1 2.7220 1.0270 -1.8825 24 1 4.8485 1.6415 -3.0099 25 1 6.4470 0.0188 -0.0104 26 1 6.2665 -2.1380 -0.0145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645246.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:58 Heat of formation + Delta-G solvation = -142.589232 kcal Electronic energy + Delta-G solvation = -20215.566213 eV Core-core repulsion = 16423.320818 eV Total energy + Delta-G solvation = -3792.245396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.040 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.36292 -46.92316 -46.75873 -39.25110 -37.84627 -36.06433 -34.34735 -31.58711 -30.33522 -26.48741 -25.70792 -22.94026 -22.75269 -20.83410 -18.93928 -17.73590 -17.70708 -17.15586 -16.84056 -15.88134 -15.13520 -14.45556 -14.24373 -13.98647 -13.91224 -13.71990 -13.51505 -13.42707 -13.26773 -13.05029 -12.95933 -12.89928 -12.61370 -12.39400 -12.04151 -11.40748 -11.18405 -11.06062 -10.74817 -10.56320 -10.08154 -9.48813 -9.34914 -8.53944 -8.25397 -7.66220 -5.03584 1.04901 1.65551 2.68286 3.00627 3.09399 3.11216 3.20539 3.55788 3.59742 3.75209 4.16470 4.33653 4.57406 4.70955 4.80318 4.93673 5.32030 5.54801 5.81198 6.01611 6.18065 6.37928 6.70763 6.85598 6.97539 7.11387 7.41557 7.50953 7.78607 7.89626 7.93272 8.20933 9.59814 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.010695 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.371910 B = 2617.383778 C = 4246.685372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.261 3.739 3 C 0.049 3.951 4 C -0.161 4.161 5 C -0.151 4.151 6 C 0.383 3.617 7 O -0.465 6.465 8 C -0.091 4.091 9 C 0.102 3.898 10 C -0.476 4.476 11 H 0.098 0.902 12 C 0.034 3.966 13 N -0.767 5.767 14 Si 1.069 2.931 15 H -0.269 1.269 16 H -0.269 1.269 17 H -0.270 1.270 18 C -0.262 4.262 19 C 0.515 3.485 20 F -0.193 7.193 21 F -0.193 7.193 22 F -0.164 7.164 23 H 0.122 0.878 24 H 0.097 0.903 25 H 0.133 0.867 26 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 2.201 -0.271 2.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.054 4.054 3 C 0.045 3.955 4 C -0.183 4.183 5 C -0.153 4.153 6 C 0.243 3.757 7 O -0.339 6.339 8 C -0.110 4.110 9 C 0.098 3.902 10 C -0.502 4.502 11 H 0.116 0.884 12 C -0.190 4.190 13 N -0.388 5.388 14 Si 0.891 3.109 15 H -0.193 1.193 16 H -0.194 1.194 17 H -0.195 1.195 18 C -0.268 4.268 19 C 0.461 3.539 20 F -0.175 7.175 21 F -0.174 7.174 22 F -0.145 7.145 23 H 0.140 0.860 24 H 0.113 0.887 25 H 0.150 0.850 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.571 1.586 0.065 1.687 hybrid contribution -1.554 0.431 -0.203 1.625 sum -2.125 2.017 -0.139 2.933 Atomic orbital electron populations 1.81090 1.12167 1.09318 1.08361 1.25973 0.93059 0.93082 0.93250 1.15243 0.82969 1.01148 0.96106 1.20393 0.92374 1.07044 0.98509 1.20479 0.93875 1.03247 0.97663 1.24059 0.89047 0.75118 0.87506 1.90499 1.17593 1.47737 1.78065 1.21905 1.00216 0.95747 0.93151 1.17130 0.88901 0.91355 0.92810 1.21096 1.03876 1.28694 0.96550 0.88383 1.27311 0.97991 0.92166 1.01529 1.70520 1.38580 1.27387 1.02313 0.83546 0.75533 0.78418 0.73453 1.19304 1.19412 1.19464 1.19650 0.94411 1.15790 0.96928 1.18253 0.76335 0.76434 0.82832 1.93153 1.94085 1.63356 1.66858 1.93118 1.49116 1.86802 1.88396 1.93196 1.74135 1.61374 1.85823 0.86023 0.88674 0.84971 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.70 18.41 41.84 0.77 -7.93 15 2 C 0.26 5.05 12.56 -22.47 -0.28 4.77 15 3 C 0.05 0.94 5.70 -107.10 -0.61 0.33 15 4 C -0.16 -2.70 9.49 -38.44 -0.36 -3.07 15 5 C -0.15 -2.69 5.86 -105.19 -0.62 -3.31 15 6 C 0.38 5.93 11.45 34.39 0.39 6.32 15 7 O -0.47 -8.90 17.14 5.59 0.10 -8.80 15 8 C -0.09 -1.89 7.46 -38.30 -0.29 -2.18 15 9 C 0.10 2.26 5.13 -106.93 -0.55 1.71 15 10 C -0.48 -10.77 7.02 -37.71 -0.26 -11.04 15 11 H 0.10 2.21 6.44 -52.49 -0.34 1.87 15 12 C 0.03 0.75 4.99 -17.34 -0.09 0.67 15 13 N -0.77 -17.85 12.54 55.55 0.70 -17.16 15 14 Si 1.07 19.08 29.98 -169.99 -5.10 13.98 15 15 H -0.27 -4.82 7.11 56.52 0.40 -4.41 15 16 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 17 H -0.27 -4.63 7.11 56.52 0.40 -4.23 15 18 C -0.26 -5.56 5.55 -103.40 -0.57 -6.13 15 19 C 0.52 10.88 2.88 36.00 0.10 10.99 15 20 F -0.19 -4.01 17.30 2.25 0.04 -3.97 15 21 F -0.19 -4.04 14.63 2.25 0.03 -4.01 15 22 F -0.16 -3.56 13.87 2.25 0.03 -3.53 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 24 H 0.10 1.02 8.06 -52.49 -0.42 0.60 15 25 H 0.13 2.96 6.47 -52.49 -0.34 2.62 15 26 H 0.30 7.09 6.66 -40.82 -0.27 6.82 15 LS Contribution 258.97 15.07 3.90 3.90 Total: -1.00 -24.94 258.97 -3.25 -28.19 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -0.59 Total: 0.26 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -3.14 Total: -0.95 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 1.47 Total: -25.08 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.10 Total: -8.80 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 0.10 Total: -11.50 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.10 Total: 13.98 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -24.94 -3.25 -28.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645246.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.400 kcal (2) G-P(sol) polarization free energy of solvation -24.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds