Wall clock time and date at job start Mon Mar 30 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39652 * 119.93153 * 118.60818 * 3 2 1 5 5 C 1.39877 * 120.17856 * 180.02562 * 4 3 2 6 6 C 1.47241 * 119.97181 * 179.97438 * 5 4 3 7 7 O 1.21239 * 119.99800 * 179.97438 * 6 5 4 8 8 C 1.39413 * 120.05285 * 359.69434 * 5 4 3 9 9 C 1.40481 * 119.87258 * 0.53422 * 8 5 4 10 10 C 1.41488 * 120.09111 * 179.76945 * 9 8 5 11 11 H 1.08001 * 120.00454 * 146.81978 * 10 9 8 12 12 C 1.39924 * 120.00122 * 326.81852 * 10 9 8 13 13 N 1.30842 * 119.99686 * 339.10548 * 12 10 9 14 14 Si 1.86793 * 120.00364 * 159.10137 * 12 10 9 15 15 H 1.48504 * 109.47514 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47151 * 300.00157 * 14 12 10 17 17 H 1.48497 * 109.47118 * 60.00075 * 14 12 10 18 18 C 1.39166 * 119.93658 * 298.57620 * 3 2 1 19 19 C 1.50698 * 120.03101 * 359.97438 * 18 3 2 20 20 F 1.39907 * 109.47105 * 272.22529 * 19 18 3 21 21 F 1.39898 * 109.47379 * 32.22665 * 19 18 3 22 22 F 1.39903 * 109.47181 * 152.22656 * 19 18 3 23 23 H 1.07992 * 119.91653 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.99997 * 359.97438 * 6 5 4 25 25 H 1.08000 * 120.06593 * 180.27601 * 8 5 4 26 26 H 0.96994 * 119.99784 * 354.39719 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2646 0.5804 -1.0625 5 6 4.6634 0.5835 -1.0681 6 6 5.3932 1.1956 -2.1909 7 8 6.6055 1.1989 -2.1960 8 6 5.3670 0.0126 -0.0085 9 6 4.6686 -0.5755 1.0591 10 6 5.3780 -1.1605 2.1344 11 1 4.9693 -1.1261 3.1335 12 6 6.6094 -1.7837 1.9035 13 7 6.9201 -2.1927 0.7001 14 14 7.8095 -2.0319 3.3132 15 1 9.0312 -2.7098 2.8099 16 1 8.1772 -0.7130 3.8882 17 1 7.1746 -2.8696 4.3622 18 6 3.2628 -0.5759 1.0591 19 6 2.5089 -1.1998 2.2051 20 9 2.2312 -0.2230 3.1674 21 9 1.3094 -1.7437 1.7332 22 9 3.2860 -2.2118 2.7787 23 1 2.7220 1.0270 -1.8825 24 1 4.8485 1.6415 -3.0099 25 1 6.4470 0.0188 -0.0104 26 1 6.2665 -2.1380 -0.0145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645246.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:57 Heat of formation + Delta-G solvation = -155.136522 kcal Electronic energy + Delta-G solvation = -20216.110305 eV Core-core repulsion = 16423.320818 eV Total energy + Delta-G solvation = -3792.789487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.040 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.06395 -48.62219 -48.46679 -40.73088 -39.31497 -37.63533 -35.93116 -33.14939 -31.92546 -28.09931 -27.27880 -24.39914 -24.36411 -22.37052 -20.49104 -19.43068 -19.39403 -18.74015 -18.42167 -17.29635 -16.66271 -15.93519 -15.75922 -15.63928 -15.42001 -15.28004 -15.13239 -14.96036 -14.94443 -14.67947 -14.63081 -14.55229 -14.14751 -14.00488 -13.63201 -12.93576 -12.72480 -12.53532 -12.38058 -11.97802 -11.61719 -11.06186 -10.70124 -10.10353 -9.83975 -9.33107 -6.72207 -0.49890 0.18896 1.23322 1.53360 1.55823 1.69808 1.80792 1.87557 2.09276 2.29074 2.61529 2.77591 3.02467 3.08045 3.26294 3.50598 3.64688 4.21192 4.40324 4.51000 4.67780 4.78416 5.16755 5.34355 5.36269 5.53427 5.77876 5.85624 6.27090 6.36039 6.57262 6.58890 7.92176 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.010695 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.371910 B = 2617.383778 C = 4246.685372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.271 3.729 3 C 0.034 3.966 4 C -0.118 4.118 5 C -0.149 4.149 6 C 0.396 3.604 7 O -0.503 6.503 8 C -0.112 4.112 9 C 0.091 3.909 10 C -0.515 4.515 11 H 0.089 0.911 12 C 0.009 3.991 13 N -0.798 5.798 14 Si 1.108 2.892 15 H -0.271 1.271 16 H -0.258 1.258 17 H -0.260 1.260 18 C -0.270 4.270 19 C 0.514 3.486 20 F -0.192 7.192 21 F -0.192 7.192 22 F -0.170 7.170 23 H 0.175 0.825 24 H 0.170 0.830 25 H 0.110 0.890 26 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 3.551 -1.809 4.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.043 4.043 3 C 0.030 3.970 4 C -0.140 4.140 5 C -0.150 4.150 6 C 0.257 3.743 7 O -0.378 6.378 8 C -0.132 4.132 9 C 0.087 3.913 10 C -0.542 4.542 11 H 0.107 0.893 12 C -0.210 4.210 13 N -0.420 5.420 14 Si 0.925 3.075 15 H -0.195 1.195 16 H -0.183 1.183 17 H -0.184 1.184 18 C -0.276 4.276 19 C 0.460 3.540 20 F -0.174 7.174 21 F -0.173 7.173 22 F -0.152 7.152 23 H 0.192 0.808 24 H 0.185 0.815 25 H 0.128 0.872 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.562 2.947 -1.474 3.646 hybrid contribution -1.449 0.129 0.138 1.461 sum -3.011 3.076 -1.336 4.507 Atomic orbital electron populations 1.81116 1.12445 1.09787 1.08696 1.25841 0.92813 0.92702 0.92934 1.15395 0.83064 1.02017 0.96480 1.20970 0.91837 1.03090 0.98096 1.21001 0.94621 1.01796 0.97612 1.24857 0.88395 0.73571 0.87481 1.90519 1.19710 1.49010 1.78597 1.21824 0.99474 0.97302 0.94590 1.17325 0.89423 0.91243 0.93268 1.21088 1.05221 1.31395 0.96486 0.89311 1.28323 0.99083 0.91015 1.02545 1.70615 1.38435 1.30180 1.02803 0.83084 0.73906 0.78911 0.71582 1.19509 1.18270 1.18436 1.19818 0.94321 1.15951 0.97494 1.18329 0.76308 0.76361 0.83001 1.93147 1.94075 1.63271 1.66877 1.93114 1.49036 1.86822 1.88374 1.93184 1.74345 1.61670 1.85953 0.80790 0.81451 0.87199 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.71 18.41 19.01 0.35 -16.36 15 2 C 0.27 9.76 12.56 88.33 1.11 10.87 15 3 C 0.03 1.22 5.70 -21.47 -0.12 1.10 15 4 C -0.12 -3.43 9.49 23.01 0.22 -3.21 15 5 C -0.15 -4.86 5.86 -20.23 -0.12 -4.98 15 6 C 0.40 10.53 11.45 70.19 0.80 11.34 15 7 O -0.50 -18.18 17.14 -2.90 -0.05 -18.23 15 8 C -0.11 -4.69 7.46 23.10 0.17 -4.52 15 9 C 0.09 4.09 5.13 -21.36 -0.11 3.98 15 10 C -0.52 -24.16 7.02 23.48 0.16 -24.00 15 11 H 0.09 4.17 6.44 -2.91 -0.02 4.16 15 12 C 0.01 0.40 4.99 85.25 0.43 0.83 15 13 N -0.80 -38.74 12.54 21.82 0.27 -38.47 15 14 Si 1.11 39.48 29.98 68.60 2.06 41.53 15 15 H -0.27 -9.60 7.11 99.48 0.71 -8.89 15 16 H -0.26 -8.63 7.11 99.48 0.71 -7.93 15 17 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15 18 C -0.27 -11.32 5.55 -19.07 -0.11 -11.42 15 19 C 0.51 21.69 2.88 71.24 0.20 21.89 15 20 F -0.19 -7.96 17.30 44.97 0.78 -7.18 15 21 F -0.19 -7.91 14.63 44.97 0.66 -7.26 15 22 F -0.17 -7.55 13.87 44.97 0.62 -6.93 15 23 H 0.17 3.33 8.06 -2.91 -0.02 3.30 15 24 H 0.17 2.28 8.06 -2.91 -0.02 2.26 15 25 H 0.11 5.10 6.47 -2.91 -0.02 5.08 15 26 H 0.29 14.23 6.66 -92.71 -0.62 13.61 15 Total: -1.00 -56.20 258.97 8.75 -47.44 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.42 Total: 3.58 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 2.64 Total: 1.87 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.62 Total: -54.83 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.05 Total: -18.23 kcal Atomic # 9 Polarization: -23.42 SS G_CDS: 2.06 Total: -21.36 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.06 Total: 41.53 kcal Total: -56.20 8.75 -47.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645246.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.693 kcal (2) G-P(sol) polarization free energy of solvation -56.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds