Wall clock time and date at job start Mon Mar 30 2020 04:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.41545 * 119.98088 * 281.50587 * 3 2 1 5 5 C 1.47154 * 120.18095 * 0.25743 * 4 3 2 6 6 O 1.21256 * 119.99802 * 359.97438 * 5 4 3 7 7 C 1.38861 * 119.64115 * 180.27552 * 4 3 2 8 8 C 1.40782 * 119.59083 * 359.97438 * 7 4 3 9 9 C 1.41022 * 120.02196 * 180.02562 * 8 7 4 10 10 H 1.08004 * 119.99373 * 154.37222 * 9 8 7 11 11 C 1.40205 * 120.00414 * 334.37348 * 9 8 7 12 12 N 1.30660 * 120.00117 * 343.19974 * 11 9 8 13 13 Si 1.86799 * 120.00197 * 163.20009 * 11 9 8 14 14 H 1.48499 * 109.47425 * 89.99968 * 13 11 9 15 15 H 1.48500 * 109.47217 * 210.00228 * 13 11 9 16 16 H 1.48507 * 109.46969 * 330.00154 * 13 11 9 17 17 C 1.40942 * 119.94561 * 0.02562 * 8 7 4 18 18 C 1.36357 * 120.36992 * 359.97438 * 17 8 7 19 19 C 1.50695 * 119.79618 * 180.02562 * 18 17 8 20 20 F 1.39905 * 109.47173 * 359.97356 * 19 18 17 21 21 F 1.39898 * 109.47680 * 119.97643 * 19 18 17 22 22 F 1.39897 * 109.47362 * 239.97935 * 19 18 17 23 23 H 1.08000 * 120.00133 * 179.97438 * 5 4 3 24 24 H 1.08000 * 120.20287 * 179.97438 * 7 4 3 25 25 H 0.97001 * 120.00481 * 179.97438 * 12 11 9 26 26 H 1.08008 * 119.81232 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2754 -0.2436 1.2014 5 6 2.5434 -0.5041 2.4511 6 8 1.3308 -0.5095 2.4535 7 6 4.6640 -0.2357 1.1945 8 6 5.3518 0.0148 -0.0081 9 6 6.7618 0.0245 -0.0256 10 1 7.2920 -0.1981 -0.9398 11 6 7.4755 0.3230 1.1437 12 7 6.8725 0.9041 2.1468 13 14 9.2884 -0.1099 1.2678 14 1 10.1042 1.0293 0.7759 15 1 9.6343 -0.3913 2.6843 16 1 9.5679 -1.3120 0.4418 17 6 4.6299 0.2559 -1.1943 18 6 3.2664 0.2476 -1.1854 19 6 2.5076 0.5064 -2.4614 20 9 3.4123 0.7260 -3.5057 21 9 1.7086 -0.6020 -2.7619 22 9 1.6974 1.6356 -2.3013 23 1 3.0861 -0.6906 3.3660 24 1 5.2129 -0.4205 2.1061 25 1 7.3661 1.1103 2.9559 26 1 5.1598 0.4482 -2.1157 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575647894.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:27 Heat of formation + Delta-G solvation = -156.569816 kcal Electronic energy + Delta-G solvation = -19874.420070 eV Core-core repulsion = 16081.568431 eV Total energy + Delta-G solvation = -3792.851639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.20277 -48.69633 -48.68224 -40.72810 -39.08204 -37.25832 -35.83464 -32.91887 -32.39110 -28.07992 -27.12443 -25.61396 -23.31285 -21.97901 -19.93761 -19.65584 -19.53418 -19.26579 -18.13899 -17.23131 -16.73628 -16.20724 -15.70222 -15.51881 -15.35185 -15.34018 -15.17476 -15.11365 -14.84253 -14.78937 -14.42767 -14.37556 -13.74628 -13.62622 -13.49716 -13.16461 -12.81846 -12.70625 -12.33846 -12.16929 -11.83051 -11.17740 -10.63291 -9.99641 -9.69564 -8.91062 -6.56054 -0.28807 0.23968 1.36338 1.52146 1.64323 1.66505 1.72063 1.94837 2.15514 2.21588 2.70833 2.73294 3.06310 3.21619 3.34480 3.51203 3.57956 4.33867 4.56638 4.73891 4.80394 5.06549 5.12339 5.23926 5.50419 5.68288 5.82935 6.30680 6.48980 6.55155 6.60441 6.79642 8.04032 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.007329 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.301202 B = 3819.634684 C = 4968.341767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.280 3.720 3 C -0.139 4.139 4 C -0.126 4.126 5 C 0.387 3.613 6 O -0.504 6.504 7 C -0.088 4.088 8 C 0.085 3.915 9 C -0.422 4.422 10 H 0.106 0.894 11 C 0.042 3.958 12 N -0.777 5.777 13 Si 0.987 3.013 14 H -0.265 1.265 15 H -0.264 1.264 16 H -0.254 1.254 17 C -0.167 4.167 18 C -0.100 4.100 19 C 0.503 3.497 20 F -0.169 7.169 21 F -0.185 7.185 22 F -0.187 7.187 23 H 0.156 0.844 24 H 0.151 0.849 25 H 0.307 0.693 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -1.461 -0.413 7.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.130 4.130 5 C 0.249 3.751 6 O -0.380 6.380 7 C -0.108 4.108 8 C 0.081 3.919 9 C -0.447 4.447 10 H 0.124 0.876 11 C -0.181 4.181 12 N -0.399 5.399 13 Si 0.807 3.193 14 H -0.190 1.190 15 H -0.188 1.188 16 H -0.177 1.177 17 C -0.187 4.187 18 C -0.104 4.104 19 C 0.449 3.551 20 F -0.151 7.151 21 F -0.166 7.166 22 F -0.168 7.168 23 H 0.172 0.828 24 H 0.168 0.832 25 H 0.119 0.881 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.094 -1.342 -0.188 5.272 hybrid contribution 0.737 0.163 -0.295 0.810 sum 5.831 -1.179 -0.484 5.969 Atomic orbital electron populations 1.80941 1.13210 1.13219 1.09722 1.25836 0.93029 0.92185 0.92015 1.15103 0.82866 1.21888 0.94605 1.20686 0.95029 1.03840 0.93449 1.24819 0.88424 0.68972 0.92856 1.90521 1.19412 1.39332 1.88725 1.21830 0.90296 0.98664 1.00012 1.17915 0.94349 0.88815 0.90833 1.20306 0.90939 1.35350 0.98133 0.87635 1.26888 1.06098 0.91323 0.93760 1.69641 1.41609 1.23299 1.05383 0.85066 0.74955 0.80004 0.79273 1.18992 1.18817 1.17741 1.20826 0.90400 1.06865 1.00639 1.19197 0.94921 1.06659 0.89663 1.18581 0.77427 0.73761 0.85333 1.93140 1.66860 1.94607 1.60450 1.93174 1.75417 1.53800 1.94220 1.93173 1.74875 1.53001 1.95765 0.82801 0.83205 0.88056 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -24.35 18.41 19.00 0.35 -24.00 15 2 C 0.28 13.16 10.53 88.33 0.93 14.09 15 3 C -0.14 -5.98 5.77 -20.84 -0.12 -6.10 15 4 C -0.13 -4.93 5.89 -19.97 -0.12 -5.05 15 5 C 0.39 13.47 11.42 70.16 0.80 14.27 15 6 O -0.50 -21.66 15.13 -2.96 -0.04 -21.71 15 7 C -0.09 -3.36 8.41 23.04 0.19 -3.17 15 8 C 0.09 3.38 5.56 -21.31 -0.12 3.26 15 9 C -0.42 -15.88 9.04 23.43 0.21 -15.67 15 10 H 0.11 3.69 7.90 -2.91 -0.02 3.67 15 11 C 0.04 1.46 5.15 85.35 0.44 1.90 15 12 N -0.78 -28.16 10.95 21.87 0.24 -27.92 15 13 Si 0.99 26.48 29.59 68.60 2.03 28.51 15 14 H -0.27 -7.20 7.11 99.48 0.71 -6.49 15 15 H -0.26 -6.82 7.11 99.48 0.71 -6.12 15 16 H -0.25 -6.80 7.11 99.48 0.71 -6.09 15 17 C -0.17 -6.52 9.10 22.49 0.20 -6.31 15 18 C -0.10 -4.09 5.36 -19.93 -0.11 -4.20 15 19 C 0.50 19.56 2.88 71.23 0.21 19.76 15 20 F -0.17 -5.91 15.92 44.97 0.72 -5.20 15 21 F -0.18 -7.37 16.51 44.97 0.74 -6.63 15 22 F -0.19 -7.58 16.49 44.97 0.74 -6.84 15 23 H 0.16 3.71 8.06 -2.91 -0.02 3.69 15 24 H 0.15 5.33 6.19 -2.91 -0.02 5.31 15 25 H 0.31 9.77 8.29 -92.71 -0.77 9.00 15 26 H 0.14 4.82 7.08 -2.91 -0.02 4.80 15 Total: -1.00 -51.79 260.95 8.56 -43.23 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.27 Total: 7.77 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 2.52 Total: 12.78 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.59 Total: -51.92 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.04 Total: -21.71 kcal Atomic # 9 Polarization: -20.86 SS G_CDS: 2.20 Total: -18.66 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: 2.03 Total: 28.51 kcal Total: -51.79 8.56 -43.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647894.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.341 kcal (2) G-P(sol) polarization free energy of solvation -51.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds