Wall clock time and date at job start Mon Mar 30 2020 04:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00060 * 2 1 4 4 C 1.52994 * 109.47496 * 149.99637 * 3 2 1 5 5 C 1.53000 * 109.47333 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47471 * 300.00094 * 5 4 3 7 7 N 1.46898 * 109.47432 * 179.97438 * 6 5 4 8 8 C 1.46903 * 111.00133 * 180.02562 * 7 6 5 9 9 C 1.53230 * 109.33899 * 187.25239 * 8 7 6 10 10 N 1.47080 * 108.52531 * 306.16795 * 9 8 7 11 11 C 1.36931 * 120.88364 * 231.18821 * 10 9 8 12 12 H 1.07994 * 120.00368 * 26.84029 * 11 10 9 13 13 C 1.38812 * 119.99721 * 206.56279 * 11 10 9 14 14 N 1.31619 * 120.00606 * 17.47328 * 13 11 10 15 15 Si 1.86807 * 119.99780 * 197.47555 * 13 11 10 16 16 H 1.48504 * 109.46947 * 94.38387 * 15 13 11 17 17 H 1.48508 * 109.46899 * 214.38152 * 15 13 11 18 18 H 1.48495 * 109.47303 * 334.38014 * 15 13 11 19 19 C 1.47082 * 118.23403 * 51.45931 * 10 9 8 20 20 C 1.46904 * 110.99940 * 304.30483 * 7 6 5 21 21 C 1.53003 * 109.46857 * 59.99583 * 6 5 4 22 22 C 1.52997 * 109.47529 * 300.00095 * 21 6 5 23 23 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47181 * 300.00289 * 1 2 3 25 25 H 1.09001 * 109.46766 * 60.00408 * 1 2 3 26 26 H 1.09004 * 109.47140 * 29.99175 * 3 2 1 27 27 H 1.09009 * 109.47131 * 60.00094 * 4 3 2 28 28 H 1.08997 * 109.47652 * 300.00140 * 4 3 2 29 29 H 1.08998 * 109.47210 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.46842 * 60.00567 * 5 4 3 31 31 H 1.09007 * 109.47262 * 300.00284 * 6 5 4 32 32 H 1.09001 * 109.49186 * 67.29185 * 8 7 6 33 33 H 1.09000 * 109.51153 * 307.22921 * 8 7 6 34 34 H 1.09004 * 109.63143 * 186.45915 * 9 8 7 35 35 H 1.09004 * 109.79153 * 65.97703 * 9 8 7 36 36 H 0.96993 * 120.00972 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.63087 * 68.24805 * 19 10 9 38 38 H 1.08996 * 109.63194 * 188.83501 * 19 10 9 39 39 H 1.09005 * 109.48966 * 292.70358 * 20 7 6 40 40 H 1.08993 * 109.49068 * 52.75434 * 20 7 6 41 41 H 1.09002 * 109.46785 * 60.00759 * 21 6 5 42 42 H 1.09005 * 109.46985 * 180.02562 * 21 6 5 43 43 H 1.08996 * 109.47011 * 300.00441 * 22 21 6 44 44 H 1.08998 * 109.47318 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3588 1.2634 0.7213 5 6 3.9814 2.6610 0.7207 6 6 4.1890 3.1263 -0.7219 7 7 4.7862 4.4684 -0.7224 8 6 4.9999 4.9490 -2.0941 9 6 5.7849 6.2643 -2.0544 10 7 5.0790 7.2033 -1.1694 11 6 4.7753 8.4710 -1.5885 12 1 4.6412 8.6743 -2.6407 13 6 4.6340 9.4937 -0.6606 14 7 5.1153 9.3497 0.5560 15 14 3.7607 11.0744 -1.1384 16 1 2.3300 10.9862 -0.7502 17 1 4.3939 12.2208 -0.4382 18 1 3.8640 11.2727 -2.6064 19 6 4.7134 6.7465 0.1801 20 6 3.9650 5.4103 0.0499 21 6 2.8403 3.1684 -1.4432 22 6 2.2178 1.7708 -1.4427 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.3449 1.9995 0.5137 27 1 4.0242 0.5694 0.2075 28 1 3.2111 0.9315 1.7489 29 1 4.9424 2.6309 1.2342 30 1 3.3163 3.3552 1.2343 31 1 4.8541 2.4320 -1.2355 32 1 4.0362 5.1150 -2.5756 33 1 5.5643 4.2053 -2.6566 34 1 5.8473 6.6841 -3.0584 35 1 6.7889 6.0835 -1.6703 36 1 5.0170 10.0643 1.2043 37 1 5.6151 6.6083 0.7767 38 1 4.0669 7.4850 0.6541 39 1 3.0159 5.5698 -0.4619 40 1 3.7786 5.0009 1.0427 41 1 2.1752 3.8627 -0.9297 42 1 2.9883 3.4995 -2.4712 43 1 2.8829 1.0766 -1.9562 44 1 1.2568 1.8009 -1.9562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686362518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:39 Heat of formation + Delta-G solvation = -24.323947 kcal Electronic energy + Delta-G solvation = -21831.032061 eV Core-core repulsion = 18783.680800 eV Total energy + Delta-G solvation = -3047.351262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79967 -38.05094 -35.98324 -33.65237 -31.26372 -30.94494 -29.78070 -28.70169 -26.71078 -25.43814 -23.21816 -23.10429 -22.15112 -21.26564 -19.89154 -18.56911 -16.78369 -16.68345 -15.77276 -15.41380 -15.29228 -14.59233 -14.27771 -14.08444 -13.74520 -13.66049 -13.42591 -13.21827 -13.00129 -12.53556 -12.37043 -12.04132 -11.82842 -11.49124 -11.31310 -11.04274 -11.01206 -10.95678 -10.75366 -10.62454 -10.40293 -10.33022 -10.16903 -9.93963 -9.67454 -9.53340 -9.47566 -8.48184 -7.68652 -6.63621 -5.75959 -3.16766 3.38246 3.45355 3.46829 3.58371 4.39950 4.52206 4.64471 4.73174 5.04125 5.09659 5.10500 5.21061 5.25394 5.39129 5.39663 5.42941 5.46600 5.48384 5.51634 5.68677 5.83313 5.92313 5.94490 5.98826 6.05215 6.12624 6.16144 6.22404 6.26153 6.32555 6.39856 6.52547 6.61521 6.75224 6.97870 7.07279 7.29787 7.67698 7.70958 7.76134 7.86217 8.45842 9.23699 9.87367 10.46169 11.32633 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031106 B = 0.004249 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.937064 B = 6587.544355 C = 6786.966537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.088 3.912 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.083 3.917 7 N -0.525 5.525 8 C 0.044 3.956 9 C 0.148 3.852 10 N -0.596 5.596 11 C -0.251 4.251 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.903 5.903 15 Si 0.901 3.099 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.178 3.822 20 C 0.030 3.970 21 C -0.150 4.150 22 C -0.133 4.133 23 H 0.082 0.918 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.024 0.976 36 H 0.253 0.747 37 H 0.025 0.975 38 H 0.087 0.913 39 H 0.026 0.974 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 -16.572 -0.877 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.031 3.969 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.026 4.026 7 N -0.249 5.249 8 C -0.086 4.086 9 C 0.022 3.978 10 N -0.319 5.319 11 C -0.380 4.380 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.731 3.269 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.205 1.205 19 C 0.052 3.948 20 C -0.099 4.099 21 C -0.190 4.190 22 C -0.171 4.171 23 H 0.101 0.899 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.105 0.895 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.089 -16.599 -0.528 17.689 hybrid contribution -1.555 1.125 -0.649 2.026 sum -7.645 -15.474 -1.177 17.300 Atomic orbital electron populations 1.22753 0.81484 1.02390 0.99913 1.87890 1.19329 1.28395 1.95114 1.22230 0.95102 0.83878 0.95723 1.21559 0.94955 0.97973 1.00464 1.21616 1.01549 0.94938 0.96792 1.21770 0.93066 0.92225 0.95495 1.62213 1.47564 1.01078 1.14015 1.22606 0.99127 0.98144 0.88689 1.20976 0.93760 0.88463 0.94649 1.44147 1.65013 1.10436 1.12293 1.19218 1.41369 0.84702 0.92753 0.91682 1.25006 1.00495 0.97417 0.96818 1.70032 1.46669 1.33148 1.04949 0.86287 0.79511 0.83206 0.77858 1.21588 1.21762 1.20450 1.20962 0.97010 0.90159 0.86661 1.23059 0.95156 0.95403 0.96325 1.22210 0.98740 0.96251 1.01762 1.21942 1.00985 0.97346 0.96841 0.89898 0.94148 0.94205 0.92293 0.91160 0.91369 0.90427 0.91416 0.90565 0.95195 0.92233 0.92809 0.95763 0.93671 0.95641 0.89524 0.95616 0.91821 0.91674 0.91440 0.91254 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.37 16 2 O -0.39 -4.55 10.35 -35.23 -0.36 -4.92 16 3 C 0.09 1.00 2.61 -26.73 -0.07 0.93 16 4 C -0.11 -1.24 5.57 -26.73 -0.15 -1.39 16 5 C -0.11 -1.41 4.85 -26.73 -0.13 -1.54 16 6 C 0.08 1.17 2.29 -67.72 -0.16 1.02 16 7 N -0.53 -9.25 4.65 -226.05 -1.05 -10.30 16 8 C 0.04 0.79 4.99 -3.70 -0.02 0.77 16 9 C 0.15 3.20 6.69 -3.61 -0.02 3.18 16 10 N -0.60 -15.25 3.03 -171.74 -0.52 -15.77 16 11 C -0.25 -6.98 9.63 -15.06 -0.15 -7.12 16 12 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 13 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 14 N -0.90 -26.41 11.16 55.49 0.62 -25.79 16 15 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C 0.18 4.33 5.45 -3.36 -0.02 4.31 16 20 C 0.03 0.57 4.83 -3.46 -0.02 0.56 16 21 C -0.15 -2.00 4.52 -26.73 -0.12 -2.12 16 22 C -0.13 -1.53 5.54 -26.73 -0.15 -1.68 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 25 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 26 H 0.06 0.67 7.79 -51.93 -0.40 0.26 16 27 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.89 6.18 -51.93 -0.32 0.57 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.56 6.72 -51.93 -0.35 0.21 16 33 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 2.33 6.11 -51.93 -0.32 2.01 16 39 H 0.03 0.52 6.79 -51.93 -0.35 0.16 16 40 H 0.06 1.12 5.83 -51.93 -0.30 0.82 16 41 H 0.06 0.94 6.66 -51.93 -0.35 0.60 16 42 H 0.07 0.94 6.57 -51.93 -0.34 0.60 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -29.73 326.70 -9.15 -38.88 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.74 Total: -2.05 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.01 Total: -1.76 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.95 Total: -51.86 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.36 Total: -4.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.73 -9.15 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686362518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.557 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds