Wall clock time and date at job start Mon Mar 30 2020 04:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00060 * 2 1 4 4 C 1.52994 * 109.47496 * 149.99637 * 3 2 1 5 5 C 1.53000 * 109.47333 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47471 * 300.00094 * 5 4 3 7 7 N 1.46898 * 109.47432 * 179.97438 * 6 5 4 8 8 C 1.46903 * 111.00133 * 180.02562 * 7 6 5 9 9 C 1.53230 * 109.33899 * 187.25239 * 8 7 6 10 10 N 1.47080 * 108.52531 * 306.16795 * 9 8 7 11 11 C 1.36931 * 120.88364 * 231.18821 * 10 9 8 12 12 H 1.07994 * 120.00368 * 26.84029 * 11 10 9 13 13 C 1.38812 * 119.99721 * 206.56279 * 11 10 9 14 14 N 1.31619 * 120.00606 * 17.47328 * 13 11 10 15 15 Si 1.86807 * 119.99780 * 197.47555 * 13 11 10 16 16 H 1.48504 * 109.46947 * 94.38387 * 15 13 11 17 17 H 1.48508 * 109.46899 * 214.38152 * 15 13 11 18 18 H 1.48495 * 109.47303 * 334.38014 * 15 13 11 19 19 C 1.47082 * 118.23403 * 51.45931 * 10 9 8 20 20 C 1.46904 * 110.99940 * 304.30483 * 7 6 5 21 21 C 1.53003 * 109.46857 * 59.99583 * 6 5 4 22 22 C 1.52997 * 109.47529 * 300.00095 * 21 6 5 23 23 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47181 * 300.00289 * 1 2 3 25 25 H 1.09001 * 109.46766 * 60.00408 * 1 2 3 26 26 H 1.09004 * 109.47140 * 29.99175 * 3 2 1 27 27 H 1.09009 * 109.47131 * 60.00094 * 4 3 2 28 28 H 1.08997 * 109.47652 * 300.00140 * 4 3 2 29 29 H 1.08998 * 109.47210 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.46842 * 60.00567 * 5 4 3 31 31 H 1.09007 * 109.47262 * 300.00284 * 6 5 4 32 32 H 1.09001 * 109.49186 * 67.29185 * 8 7 6 33 33 H 1.09000 * 109.51153 * 307.22921 * 8 7 6 34 34 H 1.09004 * 109.63143 * 186.45915 * 9 8 7 35 35 H 1.09004 * 109.79153 * 65.97703 * 9 8 7 36 36 H 0.96993 * 120.00972 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.63087 * 68.24805 * 19 10 9 38 38 H 1.08996 * 109.63194 * 188.83501 * 19 10 9 39 39 H 1.09005 * 109.48966 * 292.70358 * 20 7 6 40 40 H 1.08993 * 109.49068 * 52.75434 * 20 7 6 41 41 H 1.09002 * 109.46785 * 60.00759 * 21 6 5 42 42 H 1.09005 * 109.46985 * 180.02562 * 21 6 5 43 43 H 1.08996 * 109.47011 * 300.00441 * 22 21 6 44 44 H 1.08998 * 109.47318 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3588 1.2634 0.7213 5 6 3.9814 2.6610 0.7207 6 6 4.1890 3.1263 -0.7219 7 7 4.7862 4.4684 -0.7224 8 6 4.9999 4.9490 -2.0941 9 6 5.7849 6.2643 -2.0544 10 7 5.0790 7.2033 -1.1694 11 6 4.7753 8.4710 -1.5885 12 1 4.6412 8.6743 -2.6407 13 6 4.6340 9.4937 -0.6606 14 7 5.1153 9.3497 0.5560 15 14 3.7607 11.0744 -1.1384 16 1 2.3300 10.9862 -0.7502 17 1 4.3939 12.2208 -0.4382 18 1 3.8640 11.2727 -2.6064 19 6 4.7134 6.7465 0.1801 20 6 3.9650 5.4103 0.0499 21 6 2.8403 3.1684 -1.4432 22 6 2.2178 1.7708 -1.4427 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.3449 1.9995 0.5137 27 1 4.0242 0.5694 0.2075 28 1 3.2111 0.9315 1.7489 29 1 4.9424 2.6309 1.2342 30 1 3.3163 3.3552 1.2343 31 1 4.8541 2.4320 -1.2355 32 1 4.0362 5.1150 -2.5756 33 1 5.5643 4.2053 -2.6566 34 1 5.8473 6.6841 -3.0584 35 1 6.7889 6.0835 -1.6703 36 1 5.0170 10.0643 1.2043 37 1 5.6151 6.6083 0.7767 38 1 4.0669 7.4850 0.6541 39 1 3.0159 5.5698 -0.4619 40 1 3.7786 5.0009 1.0427 41 1 2.1752 3.8627 -0.9297 42 1 2.9883 3.4995 -2.4712 43 1 2.8829 1.0766 -1.9562 44 1 1.2568 1.8009 -1.9562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686362518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:39 Heat of formation + Delta-G solvation = -43.345091 kcal Electronic energy + Delta-G solvation = -21831.856880 eV Core-core repulsion = 18783.680800 eV Total energy + Delta-G solvation = -3048.176080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94789 -39.23279 -37.37688 -35.22274 -33.08678 -32.06946 -31.37300 -29.99666 -27.88153 -26.78849 -24.84605 -24.58113 -23.45116 -22.42054 -21.20883 -20.08023 -18.59328 -17.63484 -17.10060 -16.76656 -16.27675 -16.13500 -15.65340 -15.39973 -15.25864 -15.11805 -14.99204 -14.49885 -14.27771 -13.98555 -13.36574 -13.32228 -12.98996 -12.95200 -12.82030 -12.62973 -12.32369 -12.25647 -12.22800 -12.00147 -11.95220 -11.88948 -11.52833 -11.35870 -11.35019 -11.08141 -10.58658 -10.40232 -9.14155 -8.66441 -7.87533 -5.32202 1.45915 1.46784 1.56514 2.50314 2.75758 3.07895 3.27454 3.67366 3.71415 3.77344 4.04129 4.14447 4.19746 4.34439 4.36715 4.39201 4.48238 4.50094 4.52829 4.54346 4.61512 4.64744 4.71051 4.74946 4.82729 4.89019 4.90104 5.02620 5.06799 5.08176 5.18561 5.21498 5.23556 5.37556 5.39290 5.45448 5.61085 5.69692 6.24367 6.28036 6.36367 6.38294 7.13252 7.84259 8.38645 9.18984 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031106 B = 0.004249 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.937064 B = 6587.544355 C = 6786.966537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.088 3.912 4 C -0.104 4.104 5 C -0.106 4.106 6 C 0.085 3.915 7 N -0.535 5.535 8 C 0.055 3.945 9 C 0.143 3.857 10 N -0.614 5.614 11 C -0.265 4.265 12 H 0.067 0.933 13 C -0.051 4.051 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.268 1.268 19 C 0.185 3.815 20 C 0.050 3.950 21 C -0.143 4.143 22 C -0.125 4.125 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.014 0.986 36 H 0.250 0.750 37 H -0.003 1.003 38 H 0.055 0.945 39 H 0.020 0.980 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 -18.198 -1.696 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.031 3.969 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.023 4.023 7 N -0.258 5.258 8 C -0.074 4.074 9 C 0.018 3.982 10 N -0.338 5.338 11 C -0.395 4.395 12 H 0.084 0.916 13 C -0.246 4.246 14 N -0.582 5.582 15 Si 0.796 3.204 16 H -0.213 1.213 17 H -0.221 1.221 18 H -0.193 1.193 19 C 0.059 3.941 20 C -0.079 4.079 21 C -0.182 4.182 22 C -0.163 4.163 23 H 0.117 0.883 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.091 -18.261 -1.370 19.637 hybrid contribution -1.207 1.579 -0.408 2.029 sum -8.298 -16.682 -1.778 18.717 Atomic orbital electron populations 1.22943 0.80070 1.03704 1.00454 1.87863 1.20931 1.28299 1.95188 1.22195 0.95201 0.84019 0.95494 1.21482 0.94872 0.96794 1.01105 1.21553 1.01456 0.95776 0.95602 1.21858 0.93600 0.89998 0.96830 1.62147 1.47871 1.02177 1.13601 1.22434 0.98747 0.96877 0.89313 1.21133 0.93528 0.89624 0.93952 1.44431 1.65801 1.10597 1.13009 1.19551 1.41079 0.85884 0.92969 0.91567 1.25777 1.01354 1.00615 0.96841 1.70192 1.48009 1.34013 1.05940 0.85245 0.78100 0.79123 0.77937 1.21264 1.22068 1.19289 1.20730 0.95545 0.91959 0.85843 1.22689 0.94044 0.93445 0.97760 1.22099 0.97951 0.97140 1.00994 1.21863 1.01224 0.96039 0.97212 0.88297 0.93532 0.93747 0.92343 0.90737 0.90558 0.90620 0.92128 0.89324 0.95454 0.89179 0.92373 0.96807 0.94066 0.98523 0.92709 0.96200 0.89992 0.93015 0.91939 0.90848 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.40 -8.45 10.35 -148.98 -1.54 -9.99 16 3 C 0.09 1.80 2.61 30.59 0.08 1.88 16 4 C -0.10 -2.07 5.57 30.59 0.17 -1.90 16 5 C -0.11 -2.47 4.85 30.59 0.15 -2.32 16 6 C 0.09 2.21 2.29 44.91 0.10 2.31 16 7 N -0.53 -18.13 4.65 -869.08 -4.04 -22.17 16 8 C 0.06 1.91 4.99 86.38 0.43 2.35 16 9 C 0.14 6.17 6.69 86.35 0.58 6.75 16 10 N -0.61 -32.00 3.03 -697.25 -2.11 -34.11 16 11 C -0.26 -14.92 9.63 84.03 0.81 -14.11 16 12 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 13 C -0.05 -2.87 4.93 84.86 0.42 -2.45 16 14 N -0.94 -56.26 11.16 21.65 0.24 -56.02 16 15 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 C 0.19 9.28 5.45 86.50 0.47 9.75 16 20 C 0.05 1.92 4.83 86.54 0.42 2.34 16 21 C -0.14 -3.49 4.52 30.59 0.14 -3.35 16 22 C -0.12 -2.56 5.54 30.59 0.17 -2.39 16 23 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 0.64 8.08 -2.39 -0.02 0.62 16 25 H 0.04 0.62 7.87 -2.39 -0.02 0.61 16 26 H 0.06 1.19 7.79 -2.38 -0.02 1.17 16 27 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.50 6.18 -2.39 -0.01 1.48 16 31 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.03 0.97 6.72 -2.39 -0.02 0.95 16 33 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 34 H 0.06 2.40 7.95 -2.38 -0.02 2.38 16 35 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.05 3.07 6.11 -2.39 -0.01 3.05 16 39 H 0.02 0.79 6.79 -2.38 -0.02 0.78 16 40 H 0.08 2.85 5.83 -2.39 -0.01 2.83 16 41 H 0.05 1.41 6.66 -2.39 -0.02 1.40 16 42 H 0.06 1.60 6.57 -2.38 -0.02 1.58 16 43 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 1.25 7.87 -2.39 -0.02 1.23 16 Total: -1.00 -64.25 326.70 0.68 -63.57 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.95 Total: 10.89 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.16 Total: 0.44 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -5.92 Total: -112.30 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.54 Total: -9.99 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.25 0.68 -63.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686362518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.224 kcal (2) G-P(sol) polarization free energy of solvation -64.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds