Wall clock time and date at job start Mon Mar 30 2020 04:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99692 * 2 1 4 4 C 1.53006 * 109.46644 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.46961 * 63.80445 * 4 3 2 6 6 C 1.36942 * 120.00082 * 83.48385 * 5 4 3 7 7 H 1.08003 * 119.99656 * 169.77842 * 6 5 4 8 8 C 1.38809 * 120.00058 * 349.77696 * 6 5 4 9 9 N 1.31624 * 119.99694 * 4.87093 * 8 6 5 10 10 Si 1.86798 * 120.00132 * 184.86569 * 8 6 5 11 11 H 1.48498 * 109.47171 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46972 * 120.00137 * 10 8 6 13 13 H 1.48493 * 109.47321 * 240.00307 * 10 8 6 14 14 C 1.46503 * 120.00077 * 263.47586 * 5 4 3 15 15 C 1.53002 * 109.47507 * 267.06932 * 14 5 4 16 16 C 1.55000 * 113.19913 * 65.69436 * 15 14 5 17 17 C 1.54059 * 104.75795 * 146.47453 * 16 15 14 18 18 N 1.48235 * 106.70081 * 1.01567 * 17 16 15 19 19 C 1.48801 * 105.17737 * 332.51166 * 18 17 16 20 20 C 1.47678 * 108.91430 * 88.17099 * 18 17 16 21 21 C 1.52992 * 109.28082 * 312.91357 * 20 18 17 22 22 C 1.53151 * 109.99083 * 304.84997 * 21 20 18 23 23 H 1.09004 * 109.46909 * 60.00260 * 1 2 3 24 24 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47265 * 299.99884 * 1 2 3 26 26 H 1.08999 * 109.47203 * 60.00183 * 3 2 1 27 27 H 1.08999 * 109.46887 * 299.99754 * 3 2 1 28 28 H 1.08998 * 109.47229 * 303.80070 * 4 3 2 29 29 H 1.09004 * 109.46458 * 183.80619 * 4 3 2 30 30 H 0.96992 * 119.99601 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47171 * 147.06347 * 14 5 4 32 32 H 1.09002 * 109.46992 * 27.06742 * 14 5 4 33 33 H 1.09002 * 110.37532 * 27.66092 * 16 15 14 34 34 H 1.09001 * 110.47767 * 265.34619 * 16 15 14 35 35 H 1.08998 * 110.01602 * 241.69810 * 17 16 15 36 36 H 1.08998 * 110.00919 * 120.32548 * 17 16 15 37 37 H 1.09002 * 110.93245 * 160.89329 * 19 18 17 38 38 H 1.08998 * 110.93651 * 284.56744 * 19 18 17 39 39 H 1.09004 * 109.49993 * 192.97718 * 20 18 17 40 40 H 1.08988 * 109.53729 * 72.87873 * 20 18 17 41 41 H 1.08997 * 109.36929 * 64.98100 * 21 20 18 42 42 H 1.09002 * 109.36969 * 184.72676 * 21 20 18 43 43 H 1.08999 * 109.63420 * 173.63790 * 22 21 20 44 44 H 1.09005 * 109.63378 * 294.23169 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9745 0.5380 -1.2383 6 6 4.1355 1.2800 -2.3781 7 1 4.6133 0.8442 -3.2431 8 6 3.6845 2.5920 -2.4216 9 7 3.1895 3.1540 -1.3391 10 14 3.7801 3.5602 -4.0162 11 1 4.3716 2.7074 -5.0784 12 1 2.4151 3.9807 -4.4226 13 1 4.6291 4.7618 -3.8156 14 6 4.2417 -0.9023 -1.2581 15 6 5.7258 -1.1497 -0.9802 16 6 6.1567 -0.7341 0.4496 17 6 7.2514 -1.7458 0.8391 18 7 7.4291 -2.6495 -0.3224 19 6 6.1138 -2.6528 -1.0182 20 6 8.4298 -2.0631 -1.2364 21 6 8.1062 -0.5843 -1.4583 22 6 6.6676 -0.4330 -1.9614 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.8522 0.5862 0.8548 29 1 3.9785 2.1782 0.0689 30 1 2.8740 4.0706 -1.3697 31 1 3.9830 -1.3064 -2.2368 32 1 3.6418 -1.3936 -0.4921 33 1 5.3129 -0.8048 1.1359 34 1 6.5594 0.2788 0.4472 35 1 6.9371 -2.3177 1.7122 36 1 8.1840 -1.2230 1.0512 37 1 6.2175 -3.0022 -2.0455 38 1 5.3871 -3.2564 -0.4746 39 1 8.4029 -2.5887 -2.1910 40 1 9.4231 -2.1564 -0.7976 41 1 8.2190 -0.0446 -0.5181 42 1 8.7928 -0.1709 -2.1971 43 1 6.4059 0.6240 -2.0099 44 1 6.5765 -0.8815 -2.9507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691564891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:07 Heat of formation + Delta-G solvation = -1.554736 kcal Electronic energy + Delta-G solvation = -22775.473464 eV Core-core repulsion = 19729.109550 eV Total energy + Delta-G solvation = -3046.363915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46708 -37.03510 -35.38652 -32.41258 -31.69860 -30.31580 -29.15177 -28.28354 -25.65952 -25.48869 -23.66491 -22.72144 -22.01936 -20.28835 -19.82237 -18.32218 -16.77299 -15.87653 -15.33405 -15.20033 -14.91892 -14.44528 -14.00739 -13.77438 -13.60043 -13.30239 -13.07653 -12.50326 -12.33193 -12.30728 -12.00449 -11.45761 -11.35620 -11.29704 -10.95001 -10.84602 -10.80789 -10.56930 -10.50404 -10.36197 -10.21472 -9.96640 -9.86917 -9.72222 -9.63933 -9.40719 -8.81797 -8.22631 -8.08474 -6.72647 -5.63009 -3.10621 3.36225 3.44324 3.44934 4.39391 4.48520 4.95406 5.00080 5.16263 5.32821 5.40131 5.42958 5.52509 5.56907 5.72050 5.84910 5.90215 5.91629 5.96294 6.01371 6.03490 6.16382 6.18668 6.20510 6.24470 6.35726 6.48910 6.58250 6.63219 6.70767 6.73415 6.84906 6.92062 7.00283 7.07401 7.17019 7.19867 7.30367 7.59413 7.82749 7.84131 8.34737 8.48980 9.30687 9.91776 10.36266 11.29905 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.007860 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.759896 B = 3561.687364 C = 4692.580409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.402 6.402 3 C 0.059 3.941 4 C 0.180 3.820 5 N -0.590 5.590 6 C -0.215 4.215 7 H 0.075 0.925 8 C -0.019 4.019 9 N -0.921 5.921 10 Si 0.906 3.094 11 H -0.282 1.282 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.178 3.822 15 C -0.103 4.103 16 C -0.128 4.128 17 C 0.028 3.972 18 N -0.502 5.502 19 C 0.034 3.966 20 C 0.036 3.964 21 C -0.155 4.155 22 C -0.106 4.106 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.023 0.977 26 H 0.007 0.993 27 H 0.084 0.916 28 H 0.007 0.993 29 H 0.116 0.884 30 H 0.248 0.752 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 -7.161 2.706 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.322 6.322 3 C -0.019 4.019 4 C 0.055 3.945 5 N -0.310 5.310 6 C -0.344 4.344 7 H 0.092 0.908 8 C -0.212 4.212 9 N -0.572 5.572 10 Si 0.738 3.262 11 H -0.207 1.207 12 H -0.220 1.220 13 H -0.221 1.221 14 C 0.050 3.950 15 C -0.107 4.107 16 C -0.167 4.167 17 C -0.101 4.101 18 N -0.223 5.223 19 C -0.095 4.095 20 C -0.092 4.092 21 C -0.194 4.194 22 C -0.143 4.143 23 H 0.047 0.953 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.025 0.975 27 H 0.102 0.898 28 H 0.025 0.975 29 H 0.134 0.866 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.461 -7.750 2.866 9.391 hybrid contribution -0.535 1.793 -1.089 2.165 sum 3.927 -5.958 1.777 7.354 Atomic orbital electron populations 1.22460 0.84277 1.00437 0.98627 1.87857 1.16995 1.32061 1.95254 1.24076 0.97168 0.81011 0.99610 1.21188 0.89972 0.98726 0.84655 1.43955 1.77235 1.01893 1.07889 1.19448 1.29601 0.93945 0.91445 0.90752 1.24761 1.01317 0.97801 0.97353 1.70080 1.48468 1.13152 1.25475 0.86110 0.77111 0.79889 0.83120 1.20720 1.21990 1.22085 1.20422 0.89629 0.85950 0.99001 1.23142 0.99271 0.93720 0.94603 1.22813 0.97967 0.98981 0.96900 1.23087 0.98586 0.93745 0.94635 1.66432 1.06424 1.43130 1.06311 1.23552 0.90914 0.96612 0.98435 1.22516 0.95928 0.93895 0.96901 1.22273 0.98425 0.97091 1.01570 1.21775 0.91977 1.03540 0.97028 0.95254 0.91589 0.95834 0.97453 0.89804 0.97529 0.86622 0.94107 0.94131 0.93158 0.91845 0.91427 0.91113 0.91898 0.91090 0.90617 0.91380 0.91546 0.91715 0.92508 0.88890 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 11.01 101.05 1.11 1.81 16 2 O -0.40 -8.88 10.34 -35.23 -0.36 -9.25 16 3 C 0.06 1.37 5.43 37.16 0.20 1.57 16 4 C 0.18 4.22 5.04 -4.04 -0.02 4.20 16 5 N -0.59 -13.70 2.23 -173.24 -0.39 -14.09 16 6 C -0.21 -5.42 7.79 -15.06 -0.12 -5.54 16 7 H 0.07 1.87 7.35 -52.48 -0.39 1.48 16 8 C -0.02 -0.49 5.18 -17.43 -0.09 -0.58 16 9 N -0.92 -24.39 7.34 55.49 0.41 -23.99 16 10 Si 0.91 21.24 29.56 -169.99 -5.02 16.22 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.18 3.60 5.07 -4.04 -0.02 3.58 16 15 C -0.10 -1.79 0.89 -151.85 -0.14 -1.92 16 16 C -0.13 -2.14 4.71 -25.12 -0.12 -2.26 16 17 C 0.03 0.41 6.20 -2.53 -0.02 0.39 16 18 N -0.50 -7.48 6.06 -229.00 -1.39 -8.86 16 19 C 0.03 0.52 5.93 -1.56 -0.01 0.51 16 20 C 0.04 0.50 5.84 -3.40 -0.02 0.48 16 21 C -0.15 -2.32 5.53 -26.66 -0.15 -2.46 16 22 C -0.11 -1.86 4.33 -26.27 -0.11 -1.97 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.08 2.21 6.03 -51.93 -0.31 1.90 16 28 H 0.01 0.15 6.43 -51.93 -0.33 -0.19 16 29 H 0.12 3.00 5.85 -51.93 -0.30 2.70 16 30 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 32 H 0.05 1.04 7.80 -51.93 -0.41 0.63 16 33 H 0.06 1.11 6.84 -51.93 -0.36 0.76 16 34 H 0.07 1.23 6.95 -51.93 -0.36 0.86 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.87 6.93 -51.93 -0.36 0.51 16 37 H 0.07 1.06 7.69 -51.93 -0.40 0.66 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 40 H 0.07 0.83 8.14 -51.94 -0.42 0.41 16 41 H 0.06 1.00 5.37 -51.93 -0.28 0.72 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.09 1.94 6.06 -51.93 -0.31 1.63 16 44 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -26.05 320.55 -8.99 -35.05 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.57 Total: 2.28 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 0.51 Total: -2.18 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -1.37 Total: -46.94 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.36 Total: -9.25 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.05 -8.99 -35.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691564891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.493 kcal (2) G-P(sol) polarization free energy of solvation -26.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds