Wall clock time and date at job start Mon Mar 30 2020 04:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99692 * 2 1 4 4 C 1.53006 * 109.46644 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.46961 * 63.80445 * 4 3 2 6 6 C 1.36942 * 120.00082 * 83.48385 * 5 4 3 7 7 H 1.08003 * 119.99656 * 169.77842 * 6 5 4 8 8 C 1.38809 * 120.00058 * 349.77696 * 6 5 4 9 9 N 1.31624 * 119.99694 * 4.87093 * 8 6 5 10 10 Si 1.86798 * 120.00132 * 184.86569 * 8 6 5 11 11 H 1.48498 * 109.47171 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46972 * 120.00137 * 10 8 6 13 13 H 1.48493 * 109.47321 * 240.00307 * 10 8 6 14 14 C 1.46503 * 120.00077 * 263.47586 * 5 4 3 15 15 C 1.53002 * 109.47507 * 267.06932 * 14 5 4 16 16 C 1.55000 * 113.19913 * 65.69436 * 15 14 5 17 17 C 1.54059 * 104.75795 * 146.47453 * 16 15 14 18 18 N 1.48235 * 106.70081 * 1.01567 * 17 16 15 19 19 C 1.48801 * 105.17737 * 332.51166 * 18 17 16 20 20 C 1.47678 * 108.91430 * 88.17099 * 18 17 16 21 21 C 1.52992 * 109.28082 * 312.91357 * 20 18 17 22 22 C 1.53151 * 109.99083 * 304.84997 * 21 20 18 23 23 H 1.09004 * 109.46909 * 60.00260 * 1 2 3 24 24 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47265 * 299.99884 * 1 2 3 26 26 H 1.08999 * 109.47203 * 60.00183 * 3 2 1 27 27 H 1.08999 * 109.46887 * 299.99754 * 3 2 1 28 28 H 1.08998 * 109.47229 * 303.80070 * 4 3 2 29 29 H 1.09004 * 109.46458 * 183.80619 * 4 3 2 30 30 H 0.96992 * 119.99601 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47171 * 147.06347 * 14 5 4 32 32 H 1.09002 * 109.46992 * 27.06742 * 14 5 4 33 33 H 1.09002 * 110.37532 * 27.66092 * 16 15 14 34 34 H 1.09001 * 110.47767 * 265.34619 * 16 15 14 35 35 H 1.08998 * 110.01602 * 241.69810 * 17 16 15 36 36 H 1.08998 * 110.00919 * 120.32548 * 17 16 15 37 37 H 1.09002 * 110.93245 * 160.89329 * 19 18 17 38 38 H 1.08998 * 110.93651 * 284.56744 * 19 18 17 39 39 H 1.09004 * 109.49993 * 192.97718 * 20 18 17 40 40 H 1.08988 * 109.53729 * 72.87873 * 20 18 17 41 41 H 1.08997 * 109.36929 * 64.98100 * 21 20 18 42 42 H 1.09002 * 109.36969 * 184.72676 * 21 20 18 43 43 H 1.08999 * 109.63420 * 173.63790 * 22 21 20 44 44 H 1.09005 * 109.63378 * 294.23169 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9745 0.5380 -1.2383 6 6 4.1355 1.2800 -2.3781 7 1 4.6133 0.8442 -3.2431 8 6 3.6845 2.5920 -2.4216 9 7 3.1895 3.1540 -1.3391 10 14 3.7801 3.5602 -4.0162 11 1 4.3716 2.7074 -5.0784 12 1 2.4151 3.9807 -4.4226 13 1 4.6291 4.7618 -3.8156 14 6 4.2417 -0.9023 -1.2581 15 6 5.7258 -1.1497 -0.9802 16 6 6.1567 -0.7341 0.4496 17 6 7.2514 -1.7458 0.8391 18 7 7.4291 -2.6495 -0.3224 19 6 6.1138 -2.6528 -1.0182 20 6 8.4298 -2.0631 -1.2364 21 6 8.1062 -0.5843 -1.4583 22 6 6.6676 -0.4330 -1.9614 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.8522 0.5862 0.8548 29 1 3.9785 2.1782 0.0689 30 1 2.8740 4.0706 -1.3697 31 1 3.9830 -1.3064 -2.2368 32 1 3.6418 -1.3936 -0.4921 33 1 5.3129 -0.8048 1.1359 34 1 6.5594 0.2788 0.4472 35 1 6.9371 -2.3177 1.7122 36 1 8.1840 -1.2230 1.0512 37 1 6.2175 -3.0022 -2.0455 38 1 5.3871 -3.2564 -0.4746 39 1 8.4029 -2.5887 -2.1910 40 1 9.4231 -2.1564 -0.7976 41 1 8.2190 -0.0446 -0.5181 42 1 8.7928 -0.1709 -2.1971 43 1 6.4059 0.6240 -2.0099 44 1 6.5765 -0.8815 -2.9507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691564891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:07 Heat of formation + Delta-G solvation = -17.448731 kcal Electronic energy + Delta-G solvation = -22776.162680 eV Core-core repulsion = 19729.109550 eV Total energy + Delta-G solvation = -3047.053130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76715 -38.79249 -37.12721 -34.04917 -32.96375 -32.03547 -30.60630 -29.88940 -27.35262 -27.02575 -25.06605 -24.44879 -23.32620 -22.11699 -21.08191 -19.72464 -18.66988 -17.15056 -17.11262 -16.66355 -16.54647 -16.21996 -15.55987 -15.31479 -15.17602 -14.87898 -14.54472 -13.99024 -13.67699 -13.60769 -13.40280 -13.19165 -12.89775 -12.84772 -12.63982 -12.49432 -12.40481 -12.28112 -11.92124 -11.87119 -11.73053 -11.65721 -11.43916 -11.28569 -11.25019 -10.93887 -10.67850 -10.05888 -9.35445 -8.61312 -7.61240 -5.08286 1.46469 1.50290 1.56716 2.55719 3.19391 3.31818 3.41179 3.65229 3.76130 3.92708 4.17850 4.25480 4.31119 4.37724 4.49658 4.54961 4.60092 4.62097 4.67897 4.71599 4.81094 4.84129 4.85612 4.94226 4.97185 5.00235 5.05714 5.12385 5.16023 5.17349 5.25303 5.37072 5.46356 5.57156 5.61882 5.67370 5.85768 5.90939 5.92173 6.09728 6.44868 6.68428 7.32002 8.02015 8.42440 9.29759 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.007860 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.759896 B = 3561.687364 C = 4692.580409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.418 6.418 3 C 0.074 3.926 4 C 0.189 3.811 5 N -0.597 5.597 6 C -0.212 4.212 7 H 0.072 0.928 8 C -0.065 4.065 9 N -0.935 5.935 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.301 1.301 13 H -0.299 1.299 14 C 0.181 3.819 15 C -0.103 4.103 16 C -0.122 4.122 17 C 0.035 3.965 18 N -0.501 5.501 19 C 0.042 3.958 20 C 0.039 3.961 21 C -0.148 4.148 22 C -0.101 4.101 23 H 0.023 0.977 24 H 0.095 0.905 25 H 0.039 0.961 26 H 0.011 0.989 27 H 0.053 0.947 28 H 0.015 0.985 29 H 0.089 0.911 30 H 0.240 0.760 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 -8.902 2.822 10.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.338 6.338 3 C -0.004 4.004 4 C 0.063 3.937 5 N -0.317 5.317 6 C -0.342 4.342 7 H 0.090 0.910 8 C -0.256 4.256 9 N -0.587 5.587 10 Si 0.789 3.211 11 H -0.200 1.200 12 H -0.228 1.228 13 H -0.227 1.227 14 C 0.054 3.946 15 C -0.107 4.107 16 C -0.161 4.161 17 C -0.093 4.093 18 N -0.221 5.221 19 C -0.087 4.087 20 C -0.089 4.089 21 C -0.186 4.186 22 C -0.139 4.139 23 H 0.042 0.958 24 H 0.114 0.886 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.394 -9.524 2.982 11.344 hybrid contribution -0.872 2.292 -1.113 2.693 sum 4.521 -7.232 1.869 8.732 Atomic orbital electron populations 1.22694 0.81865 1.02588 0.99120 1.87803 1.19625 1.31013 1.95332 1.23685 0.97047 0.81439 0.98239 1.20922 0.90188 0.97480 0.85129 1.44037 1.77379 1.03031 1.07292 1.19568 1.28661 0.94078 0.91877 0.90969 1.25304 1.02152 0.98776 0.99412 1.70258 1.49317 1.12769 1.26368 0.85297 0.76276 0.78605 0.80919 1.19992 1.22830 1.22652 1.20454 0.91612 0.84077 0.98446 1.22957 0.97078 0.95684 0.94961 1.22714 0.98362 0.98725 0.96270 1.23053 0.98177 0.93170 0.94907 1.66455 1.06101 1.43135 1.06445 1.23491 0.91428 0.94606 0.99187 1.22577 0.96466 0.92513 0.97374 1.22202 0.96580 0.98417 1.01448 1.21651 0.93968 1.00986 0.97264 0.95824 0.88633 0.94221 0.97047 0.92884 0.96636 0.89305 0.94904 0.94817 0.93544 0.92954 0.93358 0.89972 0.90711 0.90276 0.90124 0.90469 0.89541 0.92273 0.91421 0.92704 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 11.01 113.37 1.25 2.41 16 2 O -0.42 -18.24 10.34 -148.98 -1.54 -19.78 16 3 C 0.07 3.49 5.43 71.98 0.39 3.88 16 4 C 0.19 9.03 5.04 86.38 0.43 9.47 16 5 N -0.60 -28.21 2.23 -701.99 -1.57 -29.77 16 6 C -0.21 -10.87 7.79 84.03 0.65 -10.21 16 7 H 0.07 3.68 7.35 -2.91 -0.02 3.66 16 8 C -0.06 -3.43 5.18 84.86 0.44 -2.99 16 9 N -0.93 -50.96 7.34 21.65 0.16 -50.80 16 10 Si 0.96 44.45 29.56 68.60 2.03 46.47 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 13 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 14 C 0.18 7.30 5.07 86.38 0.44 7.73 16 15 C -0.10 -3.48 0.89 -50.46 -0.04 -3.52 16 16 C -0.12 -3.98 4.71 31.64 0.15 -3.83 16 17 C 0.04 0.94 6.20 86.40 0.54 1.48 16 18 N -0.50 -13.36 6.06 -878.42 -5.33 -18.68 16 19 C 0.04 1.19 5.93 86.72 0.51 1.71 16 20 C 0.04 0.95 5.84 86.15 0.50 1.45 16 21 C -0.15 -4.14 5.53 30.64 0.17 -3.97 16 22 C -0.10 -3.49 4.33 30.89 0.13 -3.36 16 23 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.05 2.87 6.03 -2.39 -0.01 2.86 16 28 H 0.02 0.70 6.43 -2.39 -0.02 0.69 16 29 H 0.09 4.78 5.85 -2.38 -0.01 4.76 16 30 H 0.24 13.02 8.31 -92.71 -0.77 12.25 16 31 H 0.03 1.39 8.06 -2.39 -0.02 1.37 16 32 H 0.05 1.89 7.80 -2.39 -0.02 1.88 16 33 H 0.05 1.81 6.84 -2.39 -0.02 1.79 16 34 H 0.05 1.75 6.95 -2.39 -0.02 1.74 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.84 6.93 -2.39 -0.02 1.83 16 37 H 0.08 2.14 7.69 -2.39 -0.02 2.12 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.08 1.77 7.87 -2.39 -0.02 1.75 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.73 5.37 -2.39 -0.01 1.72 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 2.32 6.06 -2.39 -0.01 2.31 16 44 H 0.05 1.61 8.06 -2.38 -0.02 1.59 16 Total: -1.00 -55.84 320.55 0.28 -55.56 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.96 Total: 16.76 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.57 Total: 0.25 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -6.74 Total: -99.26 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -1.54 Total: -19.78 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -55.84 0.28 -55.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691564891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.110 kcal (2) G-P(sol) polarization free energy of solvation -55.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds