Wall clock time and date at job start Mon Mar 30 2020 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21440 * 120.00096 * 359.97438 * 5 4 2 7 7 C 1.48836 * 119.99937 * 179.97438 * 5 4 2 8 8 O 1.21503 * 119.99791 * 359.72419 * 7 5 4 9 9 N 1.34777 * 119.99937 * 179.97438 * 7 5 4 10 10 C 1.36115 * 119.99825 * 180.02562 * 9 7 5 11 11 H 1.07999 * 120.00133 * 0.02562 * 10 9 7 12 12 C 1.39592 * 119.99617 * 179.97438 * 10 9 7 13 13 N 1.31008 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99583 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00124 * 14 12 10 17 17 H 1.48500 * 109.46997 * 239.99727 * 14 12 10 18 18 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 19 19 C 1.33638 * 122.75181 * 274.73721 * 18 2 1 20 20 S 1.76194 * 107.92499 * 179.97438 * 19 18 2 21 21 C 1.70981 * 90.28229 * 0.27516 * 20 19 18 22 22 N 1.29024 * 110.16478 * 359.83754 * 21 20 19 23 23 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 24 24 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 25 25 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 27 27 H 0.96999 * 120.00047 * 359.97438 * 9 7 5 28 28 H 0.96996 * 119.99878 * 179.97438 * 13 12 10 29 29 H 1.07999 * 126.03742 * 0.03695 * 19 18 2 30 30 H 1.07996 * 124.91121 * 179.83947 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8578 1.1600 -2.4118 7 6 2.6437 -0.7197 -3.5722 8 8 2.9379 -1.8973 -3.5162 9 7 2.7720 -0.0475 -4.7333 10 6 3.2257 -0.6892 -5.8446 11 1 3.4825 -1.7371 -5.7961 12 6 3.3580 0.0069 -7.0473 13 7 3.0450 1.2777 -7.1066 14 14 3.9800 -0.8739 -8.5727 15 1 4.2602 -2.2948 -8.2442 16 1 2.9480 -0.8070 -9.6384 17 1 5.2257 -0.2204 -9.0483 18 6 2.0324 -0.7103 1.2305 19 6 2.1859 -0.0965 2.4076 20 16 2.7880 -1.2824 3.5631 21 6 2.7813 -2.4838 2.3466 22 7 2.3623 -1.9861 1.2323 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.2491 -1.6317 -1.1525 27 1 2.5402 0.8934 -4.7772 28 1 3.1373 1.7614 -7.9422 29 1 1.9767 0.9427 2.6143 30 1 3.0838 -3.5105 2.4901 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697855724.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:32 Heat of formation + Delta-G solvation = -25.033801 kcal Electronic energy + Delta-G solvation = -17630.018829 eV Core-core repulsion = 14552.464462 eV Total energy + Delta-G solvation = -3077.554367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38006 -39.21433 -37.21436 -35.08849 -34.11452 -31.56070 -31.17967 -29.16847 -26.07122 -25.60633 -23.77542 -22.06255 -19.80057 -19.30266 -18.47381 -18.19694 -16.84305 -16.05439 -15.49712 -15.08248 -15.00445 -14.60014 -14.32843 -13.92005 -13.51558 -13.46811 -13.09918 -12.73410 -12.45278 -12.14070 -11.77617 -11.69190 -11.22860 -11.18321 -10.47803 -10.38432 -10.30455 -9.86134 -9.69888 -9.67986 -9.12596 -8.70628 -8.23423 -8.18758 -6.63869 -3.95837 0.50807 1.17570 1.48776 2.46789 2.60298 3.16161 3.18490 3.25255 3.45472 3.97342 4.10615 4.31860 4.73244 5.03323 5.08911 5.16110 5.20803 5.29960 5.37817 5.63172 5.88919 5.92076 6.10609 6.26059 6.79910 7.34478 7.53378 7.74921 7.96487 8.37622 8.66614 9.00027 9.35752 9.89304 10.51253 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.042487 B = 0.003749 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.870685 B = 7466.531538 C = 7853.655171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.104 0.896 4 N -0.703 5.703 5 C 0.515 3.485 6 O -0.549 6.549 7 C 0.396 3.604 8 O -0.594 6.594 9 N -0.501 5.501 10 C -0.305 4.305 11 H 0.113 0.887 12 C 0.030 3.970 13 N -0.870 5.870 14 Si 0.938 3.062 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.278 1.278 18 C 0.064 3.936 19 C -0.247 4.247 20 S 0.114 5.886 21 C 0.028 3.972 22 N -0.460 5.460 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.419 0.581 27 H 0.405 0.595 28 H 0.279 0.721 29 H 0.181 0.819 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -2.375 19.039 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.110 3.890 3 H 0.121 0.879 4 N -0.358 5.358 5 C 0.300 3.700 6 O -0.426 6.426 7 C 0.180 3.820 8 O -0.482 6.482 9 N -0.135 5.135 10 C -0.435 4.435 11 H 0.131 0.869 12 C -0.176 4.176 13 N -0.508 5.508 14 Si 0.763 3.237 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.068 4.068 19 C -0.387 4.387 20 S 0.366 5.634 21 C -0.270 4.270 22 N -0.173 5.173 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.257 0.743 27 H 0.240 0.760 28 H 0.090 0.910 29 H 0.198 0.802 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.010 -2.517 19.478 19.742 hybrid contribution -0.019 0.174 -1.361 1.372 sum -2.029 -2.342 18.117 18.380 Atomic orbital electron populations 1.22179 0.93771 1.02790 1.02893 1.19380 0.94239 0.95734 0.79660 0.87856 1.45649 1.66809 1.15483 1.07823 1.20723 0.77668 0.86652 0.85006 1.90675 1.50442 1.16082 1.85441 1.18940 0.90597 0.87965 0.84454 1.90594 1.57312 1.15637 1.84653 1.41554 1.51621 1.13137 1.07209 1.19933 1.40114 0.97287 0.86211 0.86947 1.25576 0.96586 0.95564 0.99904 1.69489 1.44306 1.08322 1.28695 0.85674 0.78373 0.79756 0.79850 1.18718 1.20315 1.20319 1.20452 1.01124 0.89306 0.95956 1.26760 1.10898 1.05197 0.95831 1.83986 1.60236 1.02584 1.16557 1.28445 1.03016 1.04842 0.90734 1.65988 1.13086 1.11721 1.26529 0.91670 0.90812 0.92011 0.74295 0.76016 0.91026 0.80188 0.78166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.47 37.16 0.35 -1.71 16 2 C 0.22 3.23 2.91 -69.09 -0.20 3.03 16 3 H 0.10 1.54 7.58 -51.93 -0.39 1.15 16 4 N -0.70 -13.09 5.06 -55.56 -0.28 -13.37 16 5 C 0.51 11.54 7.83 -11.87 -0.09 11.45 16 6 O -0.55 -12.85 16.13 5.42 0.09 -12.76 16 7 C 0.40 10.30 7.82 -11.87 -0.09 10.21 16 8 O -0.59 -16.54 16.03 5.36 0.09 -16.45 16 9 N -0.50 -13.65 5.25 -11.59 -0.06 -13.71 16 10 C -0.30 -8.54 9.67 -15.15 -0.15 -8.69 16 11 H 0.11 3.23 7.15 -52.49 -0.38 2.85 16 12 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 13 N -0.87 -23.55 13.03 55.53 0.72 -22.82 16 14 Si 0.94 20.33 29.56 -169.99 -5.02 15.30 16 15 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 C 0.06 0.83 5.80 -84.23 -0.49 0.34 16 19 C -0.25 -2.47 11.14 29.12 0.32 -2.15 16 20 S 0.11 0.92 23.22 -107.50 -2.50 -1.58 16 21 C 0.03 0.27 12.23 51.58 0.63 0.91 16 22 N -0.46 -6.15 9.52 -11.90 -0.11 -6.26 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.42 8.01 7.27 -40.82 -0.30 7.72 16 27 H 0.40 11.05 7.35 -40.82 -0.30 10.75 16 28 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 29 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -32.10 289.68 -5.14 -37.24 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -2.61 Total: 15.96 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 0.19 Total: 14.09 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.27 Total: -56.17 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: 0.17 Total: -29.21 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.58 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.10 -5.14 -37.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697855724.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.205 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds