Wall clock time and date at job start Mon Mar 30 2020 05:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 N 1.46502 * 109.46744 * 119.99758 * 2 1 3 5 5 C 1.34773 * 120.00266 * 274.99668 * 4 2 1 6 6 O 1.21440 * 119.99769 * 0.02562 * 5 4 2 7 7 C 1.48828 * 120.00292 * 180.02562 * 5 4 2 8 8 O 1.21503 * 119.99974 * 0.02562 * 7 5 4 9 9 N 1.34773 * 120.00292 * 180.02562 * 7 5 4 10 10 C 1.36113 * 120.00232 * 180.02562 * 9 7 5 11 11 H 1.08005 * 119.99912 * 0.02562 * 10 9 7 12 12 C 1.39586 * 120.00356 * 180.02562 * 10 9 7 13 13 N 1.31013 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00118 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46956 * 60.00011 * 14 12 10 16 16 H 1.48506 * 109.46850 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46993 * 299.99885 * 14 12 10 18 18 C 1.50700 * 109.46929 * 239.99679 * 2 1 3 19 19 C 1.33644 * 122.74710 * 85.00549 * 18 2 1 20 20 S 1.76200 * 107.92352 * 179.73069 * 19 18 2 21 21 C 1.70979 * 90.28153 * 359.97438 * 20 19 18 22 22 N 1.29028 * 110.16576 * 0.02562 * 21 20 19 23 23 H 1.08997 * 109.47313 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46973 * 300.00515 * 1 2 3 25 25 H 1.09000 * 109.47376 * 59.99880 * 1 2 3 26 26 H 0.97003 * 119.99326 * 95.00299 * 4 2 1 27 27 H 0.96998 * 119.99725 * 0.02562 * 9 7 5 28 28 H 0.96996 * 120.00225 * 180.02562 * 13 12 10 29 29 H 1.08001 * 126.03803 * 359.72486 * 19 18 2 30 30 H 1.07997 * 124.91782 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8578 1.1600 2.4117 7 6 2.6436 -0.7196 3.5723 8 8 2.9333 -1.8983 3.5176 9 7 2.7718 -0.0474 4.7333 10 6 3.2264 -0.6888 5.8445 11 1 3.4848 -1.7363 5.7956 12 6 3.3588 0.0073 7.0471 13 7 3.0459 1.2781 7.1063 14 14 3.9834 -0.8728 8.5719 15 1 5.3456 -1.4045 8.3133 16 1 4.0313 0.0809 9.7092 17 1 3.0692 -1.9945 8.9053 18 6 2.0323 -0.7105 -1.2304 19 6 2.1810 -0.0979 -2.4089 20 16 2.7931 -1.2814 -3.5618 21 6 2.7889 -2.4820 -2.3444 22 7 2.3666 -1.9851 -1.2311 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.2489 -1.6318 1.1526 27 1 2.5401 0.8935 4.7771 28 1 3.1382 1.7619 7.9419 29 1 1.9641 0.9393 -2.6177 30 1 3.0955 -3.5077 -2.4868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697855726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:33 Heat of formation + Delta-G solvation = -24.925983 kcal Electronic energy + Delta-G solvation = -17629.954967 eV Core-core repulsion = 14552.405275 eV Total energy + Delta-G solvation = -3077.549691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37890 -39.21231 -37.21173 -35.08634 -34.11254 -31.56045 -31.17863 -29.16463 -26.07085 -25.60522 -23.77319 -22.06069 -19.79867 -19.30049 -18.47326 -18.19618 -16.84012 -16.05306 -15.49458 -15.08284 -15.00041 -14.59850 -14.32795 -13.92818 -13.51425 -13.46755 -13.09694 -12.72684 -12.44975 -12.13826 -11.77122 -11.68924 -11.22447 -11.14504 -10.54825 -10.40699 -10.29973 -9.86070 -9.67903 -9.67282 -9.12547 -8.70384 -8.23184 -8.18575 -6.63541 -3.95673 0.50839 1.17624 1.48829 2.47360 2.60501 3.17924 3.19925 3.20967 3.45363 3.97429 4.10563 4.32075 4.73337 5.03455 5.09050 5.16309 5.20906 5.30149 5.37781 5.63200 5.89039 5.92232 6.10809 6.26122 6.80057 7.34349 7.53473 7.74653 7.96468 8.37825 8.66785 8.99975 9.35771 9.89557 10.51432 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.042440 B = 0.003750 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.590584 B = 7464.775516 C = 7852.248045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.104 0.896 4 N -0.703 5.703 5 C 0.515 3.485 6 O -0.549 6.549 7 C 0.396 3.604 8 O -0.594 6.594 9 N -0.500 5.500 10 C -0.306 4.306 11 H 0.112 0.888 12 C 0.031 3.969 13 N -0.870 5.870 14 Si 0.939 3.061 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.269 1.269 18 C 0.064 3.936 19 C -0.248 4.248 20 S 0.114 5.886 21 C 0.028 3.972 22 N -0.460 5.460 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.419 0.581 27 H 0.405 0.595 28 H 0.280 0.720 29 H 0.181 0.819 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 -2.340 -18.999 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.110 3.890 3 H 0.121 0.879 4 N -0.358 5.358 5 C 0.300 3.700 6 O -0.427 6.427 7 C 0.180 3.820 8 O -0.482 6.482 9 N -0.134 5.134 10 C -0.437 4.437 11 H 0.130 0.870 12 C -0.176 4.176 13 N -0.508 5.508 14 Si 0.765 3.235 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.194 1.194 18 C -0.068 4.068 19 C -0.387 4.387 20 S 0.366 5.634 21 C -0.270 4.270 22 N -0.173 5.173 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.257 0.743 27 H 0.240 0.760 28 H 0.091 0.909 29 H 0.198 0.802 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.991 -2.469 -19.432 19.689 hybrid contribution -0.018 0.149 1.351 1.359 sum -2.009 -2.320 -18.081 18.340 Atomic orbital electron populations 1.22180 0.93775 1.02787 1.02893 1.19381 0.94239 0.95732 0.79660 0.87851 1.45650 1.66815 1.15482 1.07819 1.20718 0.77665 0.86650 0.85006 1.90675 1.50458 1.16082 1.85441 1.18933 0.90640 0.87975 0.84455 1.90593 1.57453 1.15531 1.84665 1.41539 1.51583 1.13147 1.07178 1.19835 1.40273 0.97286 0.86264 0.87050 1.25573 0.96550 0.95555 0.99890 1.69475 1.44194 1.08290 1.28879 0.85783 0.79668 0.78850 0.79208 1.19399 1.20618 1.19388 1.20453 1.01117 0.89335 0.95928 1.26762 1.10858 1.05238 0.95835 1.83986 1.59936 1.02787 1.16651 1.28446 1.03005 1.04827 0.90760 1.65986 1.13054 1.11728 1.26559 0.92013 0.90808 0.91677 0.74293 0.76010 0.90916 0.80188 0.78166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.47 37.16 0.35 -1.71 16 2 C 0.22 3.23 2.91 -69.08 -0.20 3.03 16 3 H 0.10 1.54 7.58 -51.93 -0.39 1.15 16 4 N -0.70 -13.11 5.06 -55.56 -0.28 -13.39 16 5 C 0.52 11.56 7.83 -11.88 -0.09 11.46 16 6 O -0.55 -12.86 16.13 5.42 0.09 -12.77 16 7 C 0.40 10.30 7.82 -11.88 -0.09 10.21 16 8 O -0.59 -16.55 16.03 5.36 0.09 -16.47 16 9 N -0.50 -13.64 5.25 -11.59 -0.06 -13.70 16 10 C -0.31 -8.58 9.67 -15.15 -0.15 -8.73 16 11 H 0.11 3.18 7.15 -52.48 -0.38 2.81 16 12 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 13 N -0.87 -23.56 13.03 55.53 0.72 -22.83 16 14 Si 0.94 20.34 29.56 -169.99 -5.02 15.32 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 18 C 0.06 0.83 5.80 -84.23 -0.49 0.34 16 19 C -0.25 -2.47 11.14 29.12 0.32 -2.15 16 20 S 0.11 0.92 23.22 -107.50 -2.50 -1.57 16 21 C 0.03 0.27 12.23 51.58 0.63 0.91 16 22 N -0.46 -6.15 9.51 -11.90 -0.11 -6.27 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.42 8.02 7.27 -40.82 -0.30 7.72 16 27 H 0.40 11.06 7.35 -40.82 -0.30 10.76 16 28 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 29 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 289.67 15.07 4.37 4.37 Total: -1.00 -32.06 289.67 -5.14 -37.20 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -2.61 Total: 16.04 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 0.19 Total: 14.08 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.27 Total: -56.19 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: 0.17 Total: -29.24 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.06 -5.14 -37.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697855726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.273 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds