Wall clock time and date at job start Mon Mar 30 2020 05:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 N 1.46502 * 109.46744 * 119.99758 * 2 1 3 5 5 C 1.34773 * 120.00266 * 274.99668 * 4 2 1 6 6 O 1.21440 * 119.99769 * 0.02562 * 5 4 2 7 7 C 1.48828 * 120.00292 * 180.02562 * 5 4 2 8 8 O 1.21503 * 119.99974 * 0.02562 * 7 5 4 9 9 N 1.34773 * 120.00292 * 180.02562 * 7 5 4 10 10 C 1.36113 * 120.00232 * 180.02562 * 9 7 5 11 11 H 1.08005 * 119.99912 * 0.02562 * 10 9 7 12 12 C 1.39586 * 120.00356 * 180.02562 * 10 9 7 13 13 N 1.31013 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00118 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46956 * 60.00011 * 14 12 10 16 16 H 1.48506 * 109.46850 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46993 * 299.99885 * 14 12 10 18 18 C 1.50700 * 109.46929 * 239.99679 * 2 1 3 19 19 C 1.33644 * 122.74710 * 85.00549 * 18 2 1 20 20 S 1.76200 * 107.92352 * 179.73069 * 19 18 2 21 21 C 1.70979 * 90.28153 * 359.97438 * 20 19 18 22 22 N 1.29028 * 110.16576 * 0.02562 * 21 20 19 23 23 H 1.08997 * 109.47313 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46973 * 300.00515 * 1 2 3 25 25 H 1.09000 * 109.47376 * 59.99880 * 1 2 3 26 26 H 0.97003 * 119.99326 * 95.00299 * 4 2 1 27 27 H 0.96998 * 119.99725 * 0.02562 * 9 7 5 28 28 H 0.96996 * 120.00225 * 180.02562 * 13 12 10 29 29 H 1.08001 * 126.03803 * 359.72486 * 19 18 2 30 30 H 1.07997 * 124.91782 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8578 1.1600 2.4117 7 6 2.6436 -0.7196 3.5723 8 8 2.9333 -1.8983 3.5176 9 7 2.7718 -0.0474 4.7333 10 6 3.2264 -0.6888 5.8445 11 1 3.4848 -1.7363 5.7956 12 6 3.3588 0.0073 7.0471 13 7 3.0459 1.2781 7.1063 14 14 3.9834 -0.8728 8.5719 15 1 5.3456 -1.4045 8.3133 16 1 4.0313 0.0809 9.7092 17 1 3.0692 -1.9945 8.9053 18 6 2.0323 -0.7105 -1.2304 19 6 2.1810 -0.0979 -2.4089 20 16 2.7931 -1.2814 -3.5618 21 6 2.7889 -2.4820 -2.3444 22 7 2.3666 -1.9851 -1.2311 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.2489 -1.6318 1.1526 27 1 2.5401 0.8935 4.7771 28 1 3.1382 1.7619 7.9419 29 1 1.9641 0.9393 -2.6177 30 1 3.0955 -3.5077 -2.4868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697855726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:33 Heat of formation + Delta-G solvation = -50.121349 kcal Electronic energy + Delta-G solvation = -17631.047520 eV Core-core repulsion = 14552.405275 eV Total energy + Delta-G solvation = -3078.642244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.61077 -40.72480 -39.12795 -36.68255 -36.01505 -33.50369 -32.56416 -30.16757 -27.91805 -26.67455 -25.23153 -23.51522 -21.19476 -20.68510 -20.30081 -19.45896 -18.43449 -17.67940 -16.82850 -16.62736 -16.45092 -16.05458 -15.76926 -15.68293 -14.87010 -14.65402 -14.53646 -14.15044 -13.76534 -13.66459 -13.25579 -12.96633 -12.75479 -12.58707 -12.28840 -12.20483 -12.11415 -11.66447 -10.64415 -10.45885 -10.33335 -10.27744 -10.24092 -9.76801 -8.66266 -6.11351 -0.23717 0.47533 0.58699 0.74168 1.40721 1.49161 1.53435 1.68142 1.89165 2.29703 2.36558 3.08871 3.14998 3.34330 3.84394 4.02674 4.15294 4.19856 4.42683 4.46693 4.63433 4.80708 5.02011 5.17916 5.24467 5.31806 5.67373 6.16730 6.38768 6.71762 6.82241 7.00832 7.27126 7.79836 8.49393 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.042440 B = 0.003750 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.590584 B = 7464.775516 C = 7852.248045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.213 3.787 3 H 0.102 0.898 4 N -0.687 5.687 5 C 0.521 3.479 6 O -0.562 6.562 7 C 0.387 3.613 8 O -0.618 6.618 9 N -0.508 5.508 10 C -0.348 4.348 11 H 0.098 0.902 12 C -0.003 4.003 13 N -0.895 5.895 14 Si 1.011 2.989 15 H -0.264 1.264 16 H -0.265 1.265 17 H -0.264 1.264 18 C 0.036 3.964 19 C -0.247 4.247 20 S 0.188 5.812 21 C 0.015 3.985 22 N -0.506 5.506 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.417 0.583 27 H 0.401 0.599 28 H 0.290 0.710 29 H 0.204 0.796 30 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -2.448 -20.465 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.106 3.894 3 H 0.119 0.881 4 N -0.339 5.339 5 C 0.304 3.696 6 O -0.442 6.442 7 C 0.172 3.828 8 O -0.508 6.508 9 N -0.142 5.142 10 C -0.478 4.478 11 H 0.116 0.884 12 C -0.208 4.208 13 N -0.532 5.532 14 Si 0.831 3.169 15 H -0.189 1.189 16 H -0.189 1.189 17 H -0.189 1.189 18 C -0.097 4.097 19 C -0.386 4.386 20 S 0.441 5.559 21 C -0.282 4.282 22 N -0.220 5.220 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.255 0.745 27 H 0.236 0.764 28 H 0.100 0.900 29 H 0.221 0.779 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.768 -2.574 -20.952 21.183 hybrid contribution -0.085 0.179 1.601 1.613 sum -1.853 -2.395 -19.351 19.587 Atomic orbital electron populations 1.22118 0.92487 1.02733 1.03525 1.19625 0.95311 0.95520 0.78930 0.88065 1.45662 1.65103 1.15274 1.07910 1.20036 0.78115 0.86337 0.85079 1.90662 1.51523 1.16314 1.85671 1.19612 0.89905 0.87914 0.85344 1.90552 1.58305 1.16602 1.85343 1.41623 1.51930 1.12960 1.07709 1.19956 1.42954 0.97232 0.87609 0.88450 1.26545 0.95640 0.96218 1.02369 1.69540 1.43982 1.09463 1.30228 0.84749 0.79059 0.77923 0.75152 1.18878 1.18919 1.18867 1.20151 1.03789 0.89835 0.95886 1.27115 1.09123 1.06795 0.95608 1.83763 1.57720 1.00302 1.14076 1.28910 1.02062 1.06526 0.90704 1.65935 1.14991 1.12326 1.28775 0.92367 0.92802 0.88316 0.74535 0.76393 0.90021 0.77930 0.75714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.47 71.98 0.68 -3.14 16 2 C 0.21 6.22 2.91 44.25 0.13 6.35 16 3 H 0.10 2.98 7.58 -2.39 -0.02 2.96 16 4 N -0.69 -26.07 5.06 -448.03 -2.26 -28.34 16 5 C 0.52 24.03 7.83 87.08 0.68 24.71 16 6 O -0.56 -26.91 16.13 -3.53 -0.06 -26.97 16 7 C 0.39 20.89 7.82 87.08 0.68 21.57 16 8 O -0.62 -35.64 16.03 -3.73 -0.06 -35.70 16 9 N -0.51 -28.77 5.25 -308.88 -1.62 -30.39 16 10 C -0.35 -20.07 9.67 84.35 0.82 -19.25 16 11 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 12 C 0.00 -0.17 5.51 85.14 0.47 0.30 16 13 N -0.89 -48.64 13.03 21.77 0.28 -48.36 16 14 Si 1.01 41.36 29.56 68.60 2.03 43.39 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 16 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 C 0.04 0.88 5.80 41.52 0.24 1.12 16 19 C -0.25 -4.28 11.14 66.78 0.74 -3.54 16 20 S 0.19 2.43 23.22 -56.49 -1.31 1.12 16 21 C 0.02 0.26 12.23 130.65 1.60 1.86 16 22 N -0.51 -13.05 9.51 -191.55 -1.82 -14.88 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.42 16.35 7.27 -92.71 -0.67 15.68 16 27 H 0.40 22.77 7.35 -92.71 -0.68 22.09 16 28 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 29 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.23 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -70.62 289.67 1.07 -69.55 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -0.15 Total: 40.59 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: 6.04 Total: 29.97 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -5.42 Total: -121.96 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: -0.12 Total: -62.67 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.12 kcal Total: -70.62 1.07 -69.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697855726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.431 kcal (2) G-P(sol) polarization free energy of solvation -70.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds