Wall clock time and date at job start Mon Mar 30 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31899 * 119.03794 * 2 1 4 4 C 1.32290 * 121.01630 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 120.44506 * 179.97438 * 4 3 2 6 6 C 1.39011 * 119.10711 * 359.97438 * 4 3 2 7 7 C 1.39404 * 118.25577 * 359.97438 * 6 4 3 8 8 C 1.48446 * 120.54609 * 179.97438 * 7 6 4 9 9 O 1.21486 * 120.00107 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00165 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00033 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46566 * 324.99334 * 11 10 8 13 13 C 1.52997 * 109.47289 * 84.99600 * 11 10 8 14 14 C 1.50697 * 109.47015 * 205.00057 * 11 10 8 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99815 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99524 * 179.97438 * 16 14 11 18 18 Si 1.86794 * 120.00267 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.46589 * 89.99875 * 18 16 14 20 20 H 1.48490 * 109.47303 * 209.99928 * 18 16 14 21 21 H 1.48497 * 109.46869 * 330.00523 * 18 16 14 22 22 N 1.31556 * 119.02847 * 180.27147 * 2 1 3 23 23 H 1.09001 * 109.46859 * 89.99938 * 1 2 3 24 24 H 1.08996 * 109.47741 * 210.00319 * 1 2 3 25 25 H 1.09001 * 109.46960 * 330.01011 * 1 2 3 26 26 H 1.08002 * 120.87159 * 180.02562 * 6 4 3 27 27 H 0.96992 * 119.99904 * 359.97438 * 10 8 7 28 28 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 29 29 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 30 30 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 31 31 H 0.97001 * 119.99599 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1472 1.1532 0.0000 4 6 3.4693 1.1989 -0.0005 5 17 4.2968 2.7250 -0.0012 6 6 4.1871 0.0084 -0.0005 7 6 3.4762 -1.1908 0.0006 8 6 4.1913 -2.4917 0.0001 9 8 5.4059 -2.5173 -0.0018 10 7 3.4930 -3.6445 0.0006 11 6 4.1987 -4.9284 -0.0005 12 1 5.1107 -4.8411 -0.5910 13 6 4.5563 -5.3151 1.4360 14 6 3.3116 -5.9887 -0.6001 15 1 2.3210 -5.7321 -0.9455 16 6 3.7646 -7.2865 -0.7079 17 7 2.9901 -8.2119 -1.2308 18 14 5.4781 -7.7303 -0.1112 19 1 5.4159 -8.1334 1.3167 20 1 6.0080 -8.8566 -0.9209 21 1 6.3724 -6.5536 -0.2548 22 7 2.1454 -1.1503 -0.0055 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5137 26 1 5.2671 0.0124 -0.0005 27 1 2.5233 -3.6241 0.0017 28 1 5.0810 -6.2705 1.4352 29 1 3.6443 -5.4023 2.0265 30 1 5.1980 -4.5481 1.8698 31 1 3.3089 -9.1249 -1.3069 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723227258.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:46 Heat of formation + Delta-G solvation = -12.937301 kcal Electronic energy + Delta-G solvation = -17734.882898 eV Core-core repulsion = 14655.809368 eV Total energy + Delta-G solvation = -3079.073529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.55514 -40.58560 -38.15934 -37.02735 -35.21343 -34.38389 -34.26185 -31.77548 -29.65726 -27.30386 -26.91003 -24.52990 -23.06972 -21.60375 -19.98821 -19.20483 -18.35633 -17.45021 -16.95071 -16.84584 -16.52172 -16.19369 -15.82958 -15.04399 -14.91334 -14.75902 -14.14187 -14.09818 -13.74980 -13.34337 -13.29310 -13.05418 -12.79056 -12.74733 -12.19424 -12.14764 -11.75456 -11.72807 -11.43070 -11.32042 -10.88075 -10.69845 -10.69192 -10.05187 -8.37533 -6.44934 -0.88013 -0.53972 0.26743 1.29949 1.38079 1.47085 1.50644 1.90351 2.27188 2.44000 2.58745 2.88430 2.98346 3.31725 3.53145 3.93180 4.17749 4.41439 4.52837 4.64165 4.66948 4.72013 4.76473 4.94264 5.20736 5.24961 5.34481 5.40813 5.49650 6.07206 6.49404 6.56906 6.70098 7.02482 7.23952 8.77688 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.031264 B = 0.004502 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.391992 B = 6218.568050 C = 6904.187488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.334 3.666 3 N -0.507 5.507 4 C 0.226 3.774 5 Cl 0.016 6.984 6 C -0.164 4.164 7 C 0.149 3.851 8 C 0.558 3.442 9 O -0.561 6.561 10 N -0.671 5.671 11 C 0.239 3.761 12 H 0.034 0.966 13 C -0.157 4.157 14 C -0.537 4.537 15 H 0.055 0.945 16 C 0.031 3.969 17 N -0.932 5.932 18 Si 0.939 3.061 19 H -0.258 1.258 20 H -0.292 1.292 21 H -0.257 1.257 22 N -0.500 5.500 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.178 0.822 27 H 0.414 0.586 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 19.589 4.417 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 N -0.225 5.225 4 C 0.050 3.950 5 Cl 0.045 6.955 6 C -0.188 4.188 7 C 0.002 3.998 8 C 0.342 3.658 9 O -0.440 6.440 10 N -0.319 5.319 11 C 0.135 3.865 12 H 0.052 0.948 13 C -0.215 4.215 14 C -0.575 4.575 15 H 0.074 0.926 16 C -0.169 4.169 17 N -0.571 5.571 18 Si 0.766 3.234 19 H -0.183 1.183 20 H -0.220 1.220 21 H -0.182 1.182 22 N -0.219 5.219 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.126 0.874 26 H 0.196 0.804 27 H 0.251 0.749 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.846 19.430 4.360 19.998 hybrid contribution 1.250 -0.468 -0.021 1.335 sum -0.596 18.962 4.339 19.461 Atomic orbital electron populations 1.20853 0.81519 1.06021 1.05813 1.24055 0.99830 0.80886 0.88498 1.67739 1.08453 1.31606 1.14694 1.22151 0.89923 0.89079 0.93822 1.98449 1.74617 1.26705 1.95714 1.22724 1.04619 0.90279 1.01209 1.21559 0.90033 0.94001 0.94252 1.18005 0.86501 0.83507 0.77805 1.90748 1.13695 1.87262 1.52284 1.45971 1.11446 1.04967 1.69483 1.18976 0.93046 0.80490 0.94023 0.94841 1.22360 1.01239 0.99793 0.98079 1.21186 1.01952 0.93039 1.41340 0.92648 1.25558 1.00934 0.95946 0.94466 1.69977 1.38627 1.02927 1.45539 0.85999 0.80603 0.78135 0.78672 1.18348 1.21963 1.18183 1.68290 1.08359 1.31667 1.13538 0.87508 0.88048 0.87407 0.80432 0.74942 0.93532 0.91607 0.93050 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.31 71.24 0.73 -0.50 16 2 C 0.33 7.82 7.64 138.79 1.06 8.88 16 3 N -0.51 -12.06 10.31 -178.77 -1.84 -13.90 16 4 C 0.23 5.31 7.34 84.81 0.62 5.93 16 5 Cl 0.02 0.31 29.16 -2.72 -0.08 0.23 16 6 C -0.16 -4.31 9.53 22.74 0.22 -4.09 16 7 C 0.15 4.61 6.79 41.95 0.28 4.90 16 8 C 0.56 21.13 7.79 86.96 0.68 21.81 16 9 O -0.56 -23.82 16.09 -3.67 -0.06 -23.88 16 10 N -0.67 -27.02 5.06 -448.39 -2.27 -29.29 16 11 C 0.24 11.14 2.15 44.24 0.10 11.24 16 12 H 0.03 1.70 6.63 -2.39 -0.02 1.69 16 13 C -0.16 -6.60 8.97 71.98 0.65 -5.96 16 14 C -0.54 -29.00 9.31 25.60 0.24 -28.77 16 15 H 0.06 3.22 7.98 -2.91 -0.02 3.20 16 16 C 0.03 1.72 5.45 84.65 0.46 2.18 16 17 N -0.93 -55.21 13.96 21.45 0.30 -54.91 16 18 Si 0.94 43.40 24.38 68.60 1.67 45.07 16 19 H -0.26 -11.15 6.87 99.48 0.68 -10.47 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.26 -11.64 6.53 99.48 0.65 -10.99 16 22 N -0.50 -14.16 9.60 -177.14 -1.70 -15.86 16 23 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 25 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.18 4.28 7.73 -2.91 -0.02 4.26 16 27 H 0.41 15.61 7.92 -92.71 -0.73 14.87 16 28 H 0.05 1.99 3.27 -2.39 -0.01 1.98 16 29 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -63.81 286.90 1.42 -62.39 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.37 Total: 14.53 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 5.04 Total: 15.62 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -5.51 Total: -113.96 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.67 Total: 45.07 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -63.81 1.42 -62.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723227258.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.453 kcal (2) G-P(sol) polarization free energy of solvation -63.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds