Wall clock time and date at job start Mon Mar 30 2020 04:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00150 * 2 1 4 4 H 1.48504 * 109.47310 * 270.00425 * 3 2 1 5 5 H 1.48505 * 109.47239 * 30.00377 * 3 2 1 6 6 H 1.48499 * 109.47188 * 150.00643 * 3 2 1 7 7 C 1.38813 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99872 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00117 * 359.97438 * 7 2 1 10 10 S 1.65596 * 120.00125 * 180.02562 * 9 7 2 11 11 O 1.42105 * 104.27837 * 308.93306 * 10 9 7 12 12 O 1.42095 * 104.28136 * 181.07666 * 10 9 7 13 13 C 1.81403 * 104.44870 * 65.00171 * 10 9 7 14 14 H 1.09002 * 110.87527 * 64.29948 * 13 10 9 15 15 C 1.51725 * 111.02332 * 188.16953 * 13 10 9 16 16 N 1.25679 * 117.51074 * 133.92388 * 15 13 10 17 17 C 1.47185 * 119.26433 * 0.09981 * 16 15 13 18 18 Cl 1.80296 * 110.80279 * 102.23574 * 17 16 15 19 19 S 1.83937 * 102.50806 * 343.98004 * 17 16 15 20 20 H 0.96998 * 119.99893 * 359.97438 * 1 2 3 21 21 H 0.96998 * 119.99890 * 0.02562 * 9 7 2 22 22 H 1.07998 * 121.24735 * 313.90186 * 15 13 10 23 23 H 1.09002 * 110.79942 * 225.72858 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 16 2.1535 -3.8222 -0.0005 11 8 3.0782 -3.6931 -1.0718 12 8 1.1364 -4.8142 -0.0264 13 6 3.0227 -3.8431 1.5916 14 1 2.3150 -3.8697 2.4201 15 6 3.9922 -5.0077 1.6672 16 7 5.1491 -4.7729 2.0983 17 6 5.5013 -3.4027 2.5045 18 17 5.4779 -3.2411 4.3000 19 16 4.1589 -2.4035 1.7411 20 1 -0.4850 0.8400 0.0004 21 1 0.3556 -2.3881 -0.0005 22 1 3.6990 -6.0014 1.3623 23 1 6.4731 -3.1174 2.1016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725564801.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:08 Heat of formation + Delta-G solvation = -67.855535 kcal Electronic energy + Delta-G solvation = -14765.803624 eV Core-core repulsion = 11893.160632 eV Total energy + Delta-G solvation = -2872.642992 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 269.969 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.17197 -37.81961 -37.02511 -36.75160 -36.62261 -33.05706 -30.82451 -27.86119 -26.58254 -21.84519 -20.26844 -20.11164 -19.02121 -18.23939 -17.45327 -17.01933 -16.62201 -16.18550 -15.85744 -15.53393 -15.27213 -14.52854 -13.86926 -13.23682 -13.17003 -12.96414 -12.90091 -12.76831 -12.50705 -12.34272 -12.15980 -12.04893 -11.92128 -11.77267 -11.47186 -10.62376 -10.30734 -9.10550 -8.56084 -5.90723 -0.69291 0.00070 0.20669 0.49142 1.43049 1.49699 1.51177 1.60057 2.06370 2.38335 2.54198 2.85898 3.03860 3.26324 3.67112 3.74679 4.11858 4.53347 5.03956 5.41464 5.94133 6.60139 6.70861 7.14232 8.58430 Molecular weight = 269.97amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.009501 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.355436 B = 2946.372783 C = 3991.236047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.260 4.260 8 H 0.124 0.876 9 N -0.935 5.935 10 S 2.543 3.457 11 O -0.972 6.972 12 O -1.006 7.006 13 C -0.611 4.611 14 H 0.187 0.813 15 C 0.209 3.791 16 N -0.502 5.502 17 C 0.157 3.843 18 Cl -0.146 7.146 19 S -0.185 6.185 20 H 0.284 0.716 21 H 0.408 0.592 22 H 0.234 0.766 23 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.713 -3.815 5.148 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.212 4.212 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.406 4.406 8 H 0.141 0.859 9 N -0.684 5.684 10 S 2.632 3.368 11 O -0.961 6.961 12 O -0.994 6.994 13 C -0.821 4.821 14 H 0.204 0.796 15 C -0.008 4.008 16 N -0.209 5.209 17 C -0.086 4.086 18 Cl -0.120 7.120 19 S 0.040 5.960 20 H 0.094 0.906 21 H 0.242 0.758 22 H 0.250 0.750 23 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.720 -3.758 4.672 9.775 hybrid contribution -0.777 0.549 1.137 1.482 sum 6.943 -3.209 5.808 9.604 Atomic orbital electron populations 1.69756 1.07374 1.30127 1.44960 1.26147 0.96314 1.02709 0.96045 0.85166 0.78974 0.77020 0.79131 1.19481 1.19881 1.17829 1.19976 0.93043 0.83522 1.44077 0.85858 1.52212 1.17335 1.20399 1.78421 1.11012 0.73462 0.73367 0.78958 1.93463 1.66065 1.86149 1.50459 1.93396 1.56597 1.61315 1.88137 1.34801 1.13902 0.98380 1.35016 0.79566 1.26728 0.86139 0.99336 0.88549 1.70934 1.19426 1.17602 1.12889 1.28834 1.05224 0.89561 0.85011 1.98766 1.99097 1.97347 1.16775 1.89418 1.14228 1.15129 1.77217 0.90569 0.75755 0.75043 0.80621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.10 13.06 21.65 0.28 -42.82 14 2 C 0.00 -0.17 5.50 84.86 0.47 0.30 14 3 Si 0.97 37.35 29.55 68.60 2.03 39.38 14 4 H -0.27 -10.21 7.11 99.48 0.71 -9.50 14 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 14 6 H -0.25 -9.44 7.11 99.48 0.71 -8.73 14 7 C -0.26 -12.08 8.38 84.03 0.70 -11.38 14 8 H 0.12 5.60 5.61 -3.36 -0.02 5.58 14 9 N -0.93 -41.61 5.65 -54.26 -0.31 -41.92 14 10 S 2.54 99.98 5.17 -56.47 -0.29 99.69 14 11 O -0.97 -43.66 17.75 -127.65 -2.27 -45.92 14 12 O -1.01 -42.19 18.08 -127.65 -2.31 -44.50 14 13 C -0.61 -19.50 4.14 71.56 0.30 -19.21 14 14 H 0.19 5.28 8.14 -2.39 -0.02 5.26 14 15 C 0.21 5.60 11.00 89.32 0.98 6.58 14 16 N -0.50 -14.21 10.68 -322.54 -3.44 -17.66 14 17 C 0.16 4.55 5.28 127.64 0.67 5.23 14 18 Cl -0.15 -4.11 29.08 -2.72 -0.08 -4.18 14 19 S -0.18 -6.44 19.33 -56.47 -1.09 -7.53 14 20 H 0.28 13.03 8.31 -92.71 -0.77 12.26 14 21 H 0.41 18.64 7.98 -96.75 -0.77 17.87 14 22 H 0.23 4.19 8.06 -2.91 -0.02 4.16 14 23 H 0.18 4.38 8.14 -2.39 -0.02 4.36 14 Total: -1.00 -58.35 250.22 -3.86 -62.21 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.50 Total: 21.73 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 3.12 Total: -18.48 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.47 Total: -102.39 kcal Atomic # 8 Polarization: -85.85 SS G_CDS: -4.57 Total: -90.42 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 16 Polarization: 93.54 SS G_CDS: -1.38 Total: 92.16 kcal Atomic # 17 Polarization: -4.11 SS G_CDS: -0.08 Total: -4.18 kcal Total: -58.35 -3.86 -62.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725564801.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.649 kcal (2) G-P(sol) polarization free energy of solvation -58.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds