Wall clock time and date at job start Mon Mar 30 2020 04:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00076 * 2 1 4 4 O 1.21279 * 120.00531 * 179.72454 * 3 2 1 5 5 C 1.50705 * 119.99919 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47198 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47043 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.46914 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00180 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99966 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99886 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00129 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47070 * 89.99897 * 12 10 8 14 14 H 1.48500 * 109.47132 * 209.99566 * 12 10 8 15 15 H 1.48496 * 109.47199 * 329.99837 * 12 10 8 16 16 C 1.46499 * 120.00068 * 179.97438 * 2 1 3 17 17 C 1.53005 * 109.47049 * 125.86713 * 16 2 1 18 18 C 1.52997 * 109.47362 * 300.00209 * 17 16 2 19 19 C 1.53001 * 109.46757 * 299.99899 * 18 17 16 20 20 N 1.46899 * 109.47085 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47102 * 59.99941 * 19 18 17 22 22 C 1.52997 * 109.47362 * 299.99688 * 21 19 18 23 23 H 1.08999 * 109.47237 * 84.08117 * 1 2 3 24 24 H 1.08999 * 109.47092 * 204.07620 * 1 2 3 25 25 H 1.09001 * 109.47054 * 324.07867 * 1 2 3 26 26 H 1.09002 * 109.47077 * 299.99952 * 5 3 2 27 27 H 1.08997 * 109.47085 * 59.99886 * 5 3 2 28 28 H 1.09002 * 109.47102 * 299.99979 * 6 5 3 29 29 H 1.08997 * 109.47161 * 59.99975 * 6 5 3 30 30 H 1.09002 * 109.47211 * 299.99981 * 7 6 5 31 31 H 1.08997 * 109.47107 * 60.00010 * 7 6 5 32 32 H 0.96999 * 120.00255 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.47312 * 245.86303 * 16 2 1 34 34 H 1.09007 * 109.46865 * 60.00421 * 17 16 2 35 35 H 1.09001 * 109.47204 * 179.97438 * 17 16 2 36 36 H 1.08993 * 109.47050 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47318 * 59.99632 * 18 17 16 38 38 H 1.08997 * 109.47681 * 299.99757 * 19 18 17 39 39 H 1.00899 * 110.99608 * 60.00516 * 20 19 18 40 40 H 1.00906 * 111.00198 * 183.95061 * 20 19 18 41 41 H 1.08997 * 109.47053 * 179.97438 * 21 19 18 42 42 H 1.09001 * 109.47204 * 60.00126 * 21 19 18 43 43 H 1.09001 * 109.47318 * 300.00368 * 22 21 19 44 44 H 1.09002 * 109.47279 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1673 0.0050 5 6 1.3853 2.4723 0.0006 6 6 2.3796 3.6353 0.0011 7 6 1.6145 4.9603 0.0011 8 6 2.5938 6.1057 0.0009 9 1 3.6556 5.9084 0.0013 10 6 2.1342 7.4056 0.0014 11 7 0.8412 7.6459 0.0014 12 14 3.3481 8.8255 0.0020 13 1 3.6698 9.2022 -1.3979 14 1 2.7481 9.9894 0.7023 15 1 4.5913 8.4136 0.7019 16 6 2.1975 -1.2687 0.0006 17 6 3.1845 -1.2883 -1.1684 18 6 2.4188 -1.1421 -2.4849 19 6 1.4311 -2.3013 -2.6319 20 7 0.6954 -2.1606 -3.8956 21 6 0.4441 -2.2817 -1.4629 22 6 1.2098 -2.4280 -0.1464 23 1 -0.3633 0.1060 -1.0222 24 1 -0.3633 -0.9383 0.4192 25 1 -0.3633 0.8322 0.6029 26 1 0.7583 2.5303 -0.8892 27 1 0.7590 2.5298 0.8908 28 1 3.0062 3.5771 0.8911 29 1 3.0062 3.5779 -0.8889 30 1 0.9882 5.0181 -0.8891 31 1 0.9876 5.0178 0.8908 32 1 0.5178 8.5604 0.0014 33 1 2.7431 -1.3729 0.9384 34 1 3.8882 -0.4624 -1.0637 35 1 3.7298 -2.2321 -1.1678 36 1 3.1218 -1.1565 -3.3176 37 1 1.8737 -0.1981 -2.4853 38 1 1.9760 -3.2453 -2.6315 39 1 1.3254 -2.1705 -4.6837 40 1 -0.0082 -2.8781 -3.9862 41 1 -0.2597 -3.1073 -1.5678 42 1 -0.1009 -1.3378 -1.4633 43 1 1.7549 -3.3719 -0.1459 44 1 0.5067 -2.4136 0.6865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848395615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:27 Heat of formation + Delta-G solvation = -47.889252 kcal Electronic energy + Delta-G solvation = -21382.123399 eV Core-core repulsion = 18333.750269 eV Total energy + Delta-G solvation = -3048.373130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64399 -38.16465 -35.24554 -34.19312 -32.82516 -31.75778 -31.23444 -28.64479 -27.59101 -26.10425 -23.88005 -22.92556 -21.79658 -20.56834 -19.61202 -18.52921 -16.71164 -16.22444 -16.17278 -15.80908 -15.62196 -15.48937 -14.82705 -14.38248 -14.06244 -13.76807 -13.52257 -12.81839 -12.73662 -12.50075 -12.42042 -12.21645 -12.10094 -11.93134 -11.67393 -11.31140 -11.11673 -10.86060 -10.76441 -10.64771 -10.51140 -10.49169 -10.29766 -9.60409 -9.42507 -9.14596 -8.93130 -8.90748 -8.46933 -8.27714 -5.93532 -3.94654 3.00055 3.13117 3.37705 3.43310 3.48349 4.16503 4.40648 4.52718 4.54780 4.88238 4.89218 5.02692 5.11292 5.15715 5.26436 5.27902 5.34399 5.39669 5.42519 5.47806 5.59405 5.68224 5.77874 5.80687 5.81980 5.98610 6.01399 6.08783 6.24009 6.29342 6.35121 6.72995 6.79927 6.92372 7.00563 7.17677 7.22543 7.57545 7.76246 7.89597 8.07650 8.51624 8.53580 9.12490 9.69030 11.18012 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032149 B = 0.003554 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.738377 B = 7877.156740 C = 7901.897046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.616 5.616 3 C 0.515 3.485 4 O -0.535 6.535 5 C -0.137 4.137 6 C -0.094 4.094 7 C 0.020 3.980 8 C -0.517 4.517 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.152 3.848 17 C -0.140 4.140 18 C -0.106 4.106 19 C 0.094 3.906 20 N -0.848 5.848 21 C -0.136 4.136 22 C -0.124 4.124 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.340 0.660 40 H 0.338 0.662 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 -24.205 -2.918 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.352 5.352 3 C 0.305 3.695 4 O -0.412 6.412 5 C -0.177 4.177 6 C -0.132 4.132 7 C -0.017 4.017 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.049 3.951 17 C -0.179 4.179 18 C -0.144 4.144 19 C -0.017 4.017 20 N -0.377 5.377 21 C -0.173 4.173 22 C -0.163 4.163 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.941 -23.358 -2.620 23.688 hybrid contribution 0.815 -0.246 -0.288 0.899 sum -2.127 -23.604 -2.908 23.878 Atomic orbital electron populations 1.22075 0.80222 1.03155 1.01811 1.47979 1.06593 1.05598 1.75030 1.21170 0.88216 0.85330 0.74770 1.90597 1.14275 1.87272 1.49023 1.21866 1.00301 0.92061 1.03423 1.21438 0.96762 0.93473 1.01557 1.19128 0.95406 0.90054 0.97066 1.21283 0.93251 0.90975 1.49998 0.92613 1.25018 0.95102 0.98949 0.95440 1.69966 1.12491 1.20004 1.51312 0.86600 0.81416 0.81965 0.78084 1.20693 1.21291 1.19854 1.20926 0.92601 0.83013 0.98603 1.22012 0.98744 1.03451 0.93678 1.21440 0.97148 0.98836 0.96993 1.21337 0.93983 0.96792 0.89628 1.58694 1.19007 1.56027 1.03993 1.22081 0.97931 1.04091 0.93182 1.21829 0.98495 0.97970 0.97963 0.91891 0.90551 0.91100 0.89542 0.89565 0.92809 0.92800 0.96635 0.96668 0.93112 0.91216 0.88422 0.91908 0.92566 0.90953 0.95353 0.84705 0.85004 0.92405 0.88680 0.90799 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 8.06 59.85 0.48 1.15 16 2 N -0.62 -7.75 2.28 -173.93 -0.40 -8.14 16 3 C 0.52 8.56 7.21 -10.98 -0.08 8.48 16 4 O -0.54 -10.65 13.70 5.56 0.08 -10.57 16 5 C -0.14 -2.37 4.33 -27.88 -0.12 -2.49 16 6 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 7 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 8 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 9 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 12 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.15 1.69 3.05 -67.93 -0.21 1.49 16 17 C -0.14 -1.67 5.14 -26.73 -0.14 -1.81 16 18 C -0.11 -1.21 5.34 -26.73 -0.14 -1.36 16 19 C 0.09 0.84 3.25 -67.71 -0.22 0.62 16 20 N -0.85 -7.11 9.25 -4.67 -0.04 -7.16 16 21 C -0.14 -1.10 4.91 -26.73 -0.13 -1.24 16 22 C -0.12 -0.99 4.91 -26.73 -0.13 -1.12 16 23 H 0.06 0.60 6.49 -51.93 -0.34 0.26 16 24 H 0.08 0.57 5.26 -51.93 -0.27 0.29 16 25 H 0.07 0.67 6.69 -51.93 -0.35 0.32 16 26 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 27 H 0.09 1.37 7.42 -51.93 -0.39 0.98 16 28 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.49 5.77 -51.93 -0.30 1.19 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.01 7.46 -51.93 -0.39 0.62 16 38 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.34 2.56 9.04 -39.29 -0.36 2.20 16 40 H 0.34 2.24 8.99 -39.29 -0.35 1.88 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.86 3.95 -51.93 -0.21 0.66 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.51 6.67 -51.93 -0.35 0.16 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -33.10 332.77 -8.46 -41.57 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.47 Total: 0.75 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.36 Total: -12.06 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.30 Total: -41.97 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.10 -8.46 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848395615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.323 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds