Wall clock time and date at job start Mon Mar 30 2020 04:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00076 * 2 1 4 4 O 1.21279 * 120.00531 * 179.72454 * 3 2 1 5 5 C 1.50705 * 119.99919 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47198 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47043 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.46914 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00180 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99966 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99886 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00129 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47070 * 89.99897 * 12 10 8 14 14 H 1.48500 * 109.47132 * 209.99566 * 12 10 8 15 15 H 1.48496 * 109.47199 * 329.99837 * 12 10 8 16 16 C 1.46499 * 120.00068 * 179.97438 * 2 1 3 17 17 C 1.53005 * 109.47049 * 125.86713 * 16 2 1 18 18 C 1.52997 * 109.47362 * 300.00209 * 17 16 2 19 19 C 1.53001 * 109.46757 * 299.99899 * 18 17 16 20 20 N 1.46899 * 109.47085 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47102 * 59.99941 * 19 18 17 22 22 C 1.52997 * 109.47362 * 299.99688 * 21 19 18 23 23 H 1.08999 * 109.47237 * 84.08117 * 1 2 3 24 24 H 1.08999 * 109.47092 * 204.07620 * 1 2 3 25 25 H 1.09001 * 109.47054 * 324.07867 * 1 2 3 26 26 H 1.09002 * 109.47077 * 299.99952 * 5 3 2 27 27 H 1.08997 * 109.47085 * 59.99886 * 5 3 2 28 28 H 1.09002 * 109.47102 * 299.99979 * 6 5 3 29 29 H 1.08997 * 109.47161 * 59.99975 * 6 5 3 30 30 H 1.09002 * 109.47211 * 299.99981 * 7 6 5 31 31 H 1.08997 * 109.47107 * 60.00010 * 7 6 5 32 32 H 0.96999 * 120.00255 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.47312 * 245.86303 * 16 2 1 34 34 H 1.09007 * 109.46865 * 60.00421 * 17 16 2 35 35 H 1.09001 * 109.47204 * 179.97438 * 17 16 2 36 36 H 1.08993 * 109.47050 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47318 * 59.99632 * 18 17 16 38 38 H 1.08997 * 109.47681 * 299.99757 * 19 18 17 39 39 H 1.00899 * 110.99608 * 60.00516 * 20 19 18 40 40 H 1.00906 * 111.00198 * 183.95061 * 20 19 18 41 41 H 1.08997 * 109.47053 * 179.97438 * 21 19 18 42 42 H 1.09001 * 109.47204 * 60.00126 * 21 19 18 43 43 H 1.09001 * 109.47318 * 300.00368 * 22 21 19 44 44 H 1.09002 * 109.47279 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1673 0.0050 5 6 1.3853 2.4723 0.0006 6 6 2.3796 3.6353 0.0011 7 6 1.6145 4.9603 0.0011 8 6 2.5938 6.1057 0.0009 9 1 3.6556 5.9084 0.0013 10 6 2.1342 7.4056 0.0014 11 7 0.8412 7.6459 0.0014 12 14 3.3481 8.8255 0.0020 13 1 3.6698 9.2022 -1.3979 14 1 2.7481 9.9894 0.7023 15 1 4.5913 8.4136 0.7019 16 6 2.1975 -1.2687 0.0006 17 6 3.1845 -1.2883 -1.1684 18 6 2.4188 -1.1421 -2.4849 19 6 1.4311 -2.3013 -2.6319 20 7 0.6954 -2.1606 -3.8956 21 6 0.4441 -2.2817 -1.4629 22 6 1.2098 -2.4280 -0.1464 23 1 -0.3633 0.1060 -1.0222 24 1 -0.3633 -0.9383 0.4192 25 1 -0.3633 0.8322 0.6029 26 1 0.7583 2.5303 -0.8892 27 1 0.7590 2.5298 0.8908 28 1 3.0062 3.5771 0.8911 29 1 3.0062 3.5779 -0.8889 30 1 0.9882 5.0181 -0.8891 31 1 0.9876 5.0178 0.8908 32 1 0.5178 8.5604 0.0014 33 1 2.7431 -1.3729 0.9384 34 1 3.8882 -0.4624 -1.0637 35 1 3.7298 -2.2321 -1.1678 36 1 3.1218 -1.1565 -3.3176 37 1 1.8737 -0.1981 -2.4853 38 1 1.9760 -3.2453 -2.6315 39 1 1.3254 -2.1705 -4.6837 40 1 -0.0082 -2.8781 -3.9862 41 1 -0.2597 -3.1073 -1.5678 42 1 -0.1009 -1.3378 -1.4633 43 1 1.7549 -3.3719 -0.1459 44 1 0.5067 -2.4136 0.6865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848395615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:27 Heat of formation + Delta-G solvation = -70.056753 kcal Electronic energy + Delta-G solvation = -21383.084654 eV Core-core repulsion = 18333.750269 eV Total energy + Delta-G solvation = -3049.334385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67764 -39.25931 -36.24295 -36.09603 -34.22222 -33.32558 -32.03379 -29.92849 -28.97174 -27.09466 -25.73147 -23.73547 -22.97259 -21.96691 -20.83554 -19.68184 -18.48378 -17.70996 -17.25222 -16.87328 -16.52559 -16.39380 -16.32010 -15.91296 -15.13524 -14.82743 -14.79144 -14.20749 -14.02599 -13.82635 -13.56169 -13.36647 -13.19775 -13.07304 -12.93129 -12.68239 -12.60929 -12.47636 -12.32082 -12.02174 -11.62299 -11.52544 -11.49472 -11.42763 -11.25110 -11.09533 -10.54362 -10.36630 -9.55883 -9.51786 -8.20070 -6.30247 1.39273 1.40684 1.52262 1.69896 2.08262 2.41891 3.12634 3.50075 3.56155 3.78881 3.90575 4.15678 4.18187 4.21512 4.23323 4.25799 4.36647 4.47159 4.51827 4.55323 4.65197 4.67040 4.77206 4.92890 4.96799 5.00660 5.09567 5.10973 5.14769 5.18576 5.23020 5.27848 5.33981 5.44563 5.53307 5.74854 5.79031 5.86178 6.26976 6.30073 6.45369 6.63987 6.84731 7.27919 7.38347 8.91558 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032149 B = 0.003554 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.738377 B = 7877.156740 C = 7901.897046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.604 5.604 3 C 0.512 3.488 4 O -0.577 6.577 5 C -0.128 4.128 6 C -0.080 4.080 7 C 0.027 3.973 8 C -0.548 4.548 9 H 0.050 0.950 10 C 0.004 3.996 11 N -0.929 5.929 12 Si 0.962 3.038 13 H -0.272 1.272 14 H -0.276 1.276 15 H -0.268 1.268 16 C 0.145 3.855 17 C -0.138 4.138 18 C -0.102 4.102 19 C 0.099 3.901 20 N -0.857 5.857 21 C -0.134 4.134 22 C -0.114 4.114 23 H 0.068 0.932 24 H 0.107 0.893 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.039 0.961 29 H 0.037 0.963 30 H -0.001 1.001 31 H 0.001 0.999 32 H 0.265 0.735 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.344 0.656 40 H 0.350 0.650 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -25.894 -2.803 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.337 5.337 3 C 0.302 3.698 4 O -0.458 6.458 5 C -0.168 4.168 6 C -0.118 4.118 7 C -0.010 4.010 8 C -0.586 4.586 9 H 0.068 0.932 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.787 3.213 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.193 1.193 16 C 0.043 3.957 17 C -0.177 4.177 18 C -0.141 4.141 19 C -0.013 4.013 20 N -0.388 5.388 21 C -0.171 4.171 22 C -0.152 4.152 23 H 0.086 0.914 24 H 0.125 0.875 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.917 -25.089 -2.511 25.516 hybrid contribution 1.080 0.252 -0.354 1.165 sum -2.837 -24.836 -2.865 25.161 Atomic orbital electron populations 1.22358 0.78003 1.05023 1.02560 1.47951 1.07971 1.04937 1.72862 1.20949 0.87607 0.86251 0.75009 1.90593 1.15892 1.87933 1.51353 1.21685 0.99224 0.90944 1.04927 1.21141 0.97002 0.93624 1.00032 1.19005 0.94868 0.91683 0.95417 1.21683 0.93564 0.92554 1.50841 0.93156 1.25909 0.97120 1.01769 0.94620 1.70069 1.14287 1.21015 1.51522 0.85492 0.78956 0.78325 0.78558 1.19710 1.20163 1.19294 1.21116 0.93408 0.83401 0.97804 1.21926 0.98517 1.02762 0.94456 1.21374 0.97416 0.98748 0.96520 1.21257 0.93809 0.95732 0.90459 1.58658 1.19450 1.56794 1.03929 1.22082 0.97889 1.04551 0.92617 1.21809 0.98037 0.96816 0.98562 0.91375 0.87513 0.90829 0.88326 0.87739 0.94168 0.94439 0.98261 0.98060 0.92629 0.91972 0.92410 0.89977 0.93165 0.93829 0.94241 0.84335 0.83625 0.90175 0.89558 0.89012 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 8.06 127.77 1.03 2.07 16 2 N -0.60 -14.62 2.28 -822.58 -1.87 -16.49 16 3 C 0.51 17.30 7.21 87.66 0.63 17.93 16 4 O -0.58 -24.03 13.70 -3.03 -0.04 -24.07 16 5 C -0.13 -4.49 4.33 29.85 0.13 -4.36 16 6 C -0.08 -3.69 4.44 30.59 0.14 -3.55 16 7 C 0.03 1.50 4.97 29.85 0.15 1.65 16 8 C -0.55 -33.06 9.11 25.60 0.23 -32.83 16 9 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 10 C 0.00 0.23 5.46 84.66 0.46 0.69 16 11 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 12 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 16 C 0.15 3.05 3.05 44.99 0.14 3.18 16 17 C -0.14 -3.27 5.14 30.59 0.16 -3.11 16 18 C -0.10 -2.31 5.34 30.59 0.16 -2.15 16 19 C 0.10 1.55 3.25 44.92 0.15 1.70 16 20 N -0.86 -12.68 9.25 -168.67 -1.56 -14.24 16 21 C -0.13 -1.72 4.91 30.59 0.15 -1.57 16 22 C -0.11 -1.42 4.91 30.59 0.15 -1.27 16 23 H 0.07 1.14 6.49 -2.39 -0.02 1.12 16 24 H 0.11 1.17 5.26 -2.39 -0.01 1.16 16 25 H 0.07 1.23 6.69 -2.39 -0.02 1.21 16 26 H 0.10 3.20 8.11 -2.39 -0.02 3.18 16 27 H 0.10 3.26 7.42 -2.39 -0.02 3.24 16 28 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 29 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 30 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.86 5.77 -2.38 -0.01 1.85 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 1.22 7.46 -2.39 -0.02 1.21 16 38 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.34 4.68 9.04 -89.69 -0.81 3.87 16 40 H 0.35 3.70 8.99 -89.69 -0.81 2.90 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 1.30 3.95 -2.39 -0.01 1.29 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 0.85 6.67 -2.39 -0.02 0.84 16 Total: -1.00 -73.61 332.77 1.89 -71.72 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.62 Total: 13.66 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 3.67 Total: -21.62 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -3.15 Total: -87.63 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.04 Total: -24.07 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -73.61 1.89 -71.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848395615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.663 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds