Wall clock time and date at job start Mon Mar 30 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34231 * 126.28427 * 2 1 4 4 H 0.97000 * 125.73382 * 0.22858 * 3 2 1 5 5 N 1.39925 * 108.52310 * 180.26385 * 3 2 1 6 6 C 1.30533 * 108.89753 * 0.02562 * 5 3 2 7 7 Cl 1.73595 * 126.00252 * 180.02562 * 6 5 3 8 8 C 1.38075 * 126.27809 * 180.31259 * 2 1 3 9 9 C 1.47382 * 126.42283 * 359.69731 * 8 2 1 10 10 O 1.21614 * 119.99677 * 90.00263 * 9 8 2 11 11 N 1.34778 * 120.00209 * 270.00213 * 9 8 2 12 12 C 1.47062 * 136.05818 * 359.62841 * 11 9 8 13 13 C 1.53237 * 88.08603 * 207.20432 * 12 11 9 14 14 C 1.50691 * 114.32970 * 220.47040 * 13 12 11 15 15 H 1.07997 * 120.00490 * 93.75319 * 14 13 12 16 16 C 1.37879 * 120.00147 * 273.75978 * 14 13 12 17 17 N 1.31516 * 120.00205 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99871 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47033 * 89.99911 * 18 16 14 20 20 H 1.48497 * 109.47170 * 210.00208 * 18 16 14 21 21 H 1.48504 * 109.47036 * 329.99840 * 18 16 14 22 22 C 1.47063 * 136.05729 * 180.02562 * 11 9 8 23 23 H 1.09005 * 109.46920 * 269.68818 * 1 2 3 24 24 H 1.08997 * 109.47216 * 29.68720 * 1 2 3 25 25 H 1.08996 * 109.47584 * 149.69231 * 1 2 3 26 26 H 1.09003 * 113.46609 * 321.93831 * 12 11 9 27 27 H 1.09003 * 113.46672 * 92.37252 * 12 11 9 28 28 H 1.09004 * 114.19202 * 87.72694 * 13 12 11 29 29 H 0.97004 * 119.99942 * 179.97438 * 17 16 14 30 30 H 1.09004 * 113.47040 * 267.62075 * 22 11 9 31 31 H 1.08999 * 113.46917 * 38.00315 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0820 0.0000 4 1 2.0019 2.0046 0.0031 5 7 3.6339 0.6552 -0.0061 6 6 3.6598 -0.6499 -0.0103 7 17 5.0841 -1.6422 -0.0179 8 6 2.3240 -1.1131 -0.0061 9 6 1.8857 -2.5202 -0.0075 10 8 1.7005 -3.0983 -1.0613 11 7 1.6903 -3.1664 1.1590 12 6 1.8079 -2.8334 2.5866 13 6 2.0734 -4.3180 2.8583 14 6 1.3962 -4.8539 4.0932 15 1 0.4290 -5.3282 4.0160 16 6 2.0113 -4.7387 5.3218 17 7 1.4200 -5.2060 6.3996 18 14 3.6845 -3.9188 5.4554 19 1 3.5052 -2.4629 5.6862 20 1 4.4367 -4.5112 6.5904 21 1 4.4415 -4.1308 4.1955 22 6 1.2722 -4.5168 1.5644 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 0.8927 -0.5089 25 1 -0.3634 -0.8872 -0.5186 26 1 2.6601 -2.1929 2.8141 27 1 0.8785 -2.4711 3.0259 28 1 3.1221 -4.6054 2.7829 29 1 1.8530 -5.1252 7.2639 30 1 0.1984 -4.6079 1.7285 31 1 1.6688 -5.3046 0.9240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864068632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:02 Heat of formation + Delta-G solvation = 46.917451 kcal Electronic energy + Delta-G solvation = -18260.194733 eV Core-core repulsion = 15183.716701 eV Total energy + Delta-G solvation = -3076.478033 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.67422 -40.94952 -38.69625 -38.01498 -34.64982 -33.79311 -32.72570 -31.07455 -28.65256 -27.05497 -26.74157 -23.50394 -23.13017 -21.45757 -19.88050 -19.13181 -18.70938 -17.72043 -16.92633 -16.53392 -16.41603 -16.31041 -15.77666 -15.14012 -14.81006 -14.27952 -14.11360 -14.06556 -13.46878 -13.38473 -13.34320 -13.06154 -12.88172 -12.74042 -12.53586 -11.97506 -11.81575 -11.56800 -11.22897 -10.94534 -10.66235 -10.60677 -9.93805 -9.63378 -8.26210 -6.32398 0.29622 0.39184 0.92638 1.39210 1.44097 1.45249 1.51684 1.76101 2.13055 2.38044 3.04474 3.35977 3.60258 3.80041 4.00804 4.05044 4.32390 4.46788 4.56959 4.59677 4.65303 4.71687 4.77634 4.83522 4.98666 5.03749 5.41734 5.63147 5.91895 6.20290 6.31020 6.73778 6.80111 7.10616 7.34961 8.88881 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.020013 B = 0.006590 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.732906 B = 4248.094927 C = 4618.191161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.166 3.834 3 N -0.424 5.424 4 H 0.468 0.532 5 N -0.291 5.291 6 C 0.146 3.854 7 Cl 0.012 6.988 8 C -0.297 4.297 9 C 0.621 3.379 10 O -0.581 6.581 11 N -0.630 5.630 12 C 0.103 3.897 13 C -0.021 4.021 14 C -0.504 4.504 15 H 0.050 0.950 16 C 0.028 3.972 17 N -0.940 5.940 18 Si 0.924 3.076 19 H -0.261 1.261 20 H -0.289 1.289 21 H -0.248 1.248 22 C 0.118 3.882 23 H 0.108 0.892 24 H 0.121 0.879 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.267 0.733 30 H 0.089 0.911 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 14.910 -10.930 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.031 3.969 3 N -0.136 5.136 4 H 0.319 0.681 5 N -0.117 5.117 6 C -0.046 4.046 7 Cl 0.040 6.960 8 C -0.312 4.312 9 C 0.410 3.590 10 O -0.462 6.462 11 N -0.363 5.363 12 C -0.020 4.020 13 C -0.040 4.040 14 C -0.543 4.543 15 H 0.068 0.932 16 C -0.171 4.171 17 N -0.579 5.579 18 Si 0.749 3.251 19 H -0.186 1.186 20 H -0.216 1.216 21 H -0.172 1.172 22 C -0.004 4.004 23 H 0.127 0.873 24 H 0.140 0.860 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.133 15.663 -11.492 19.459 hybrid contribution 0.405 -0.399 0.482 0.745 sum 1.538 15.263 -11.010 18.882 Atomic orbital electron populations 1.20819 0.82824 1.06209 1.05881 1.21804 0.96216 0.84918 0.93914 1.45788 1.01735 1.09443 1.56675 0.68107 1.77049 0.98414 1.09861 1.26404 1.22622 0.88718 0.90954 1.02334 1.98408 1.35591 1.65219 1.96781 1.19747 0.91961 0.94146 1.25335 1.16853 0.76227 0.84481 0.81408 1.90727 1.54909 1.68977 1.31601 1.49791 1.64731 1.15999 1.05748 1.23526 1.01443 0.99930 0.77065 1.20757 0.97073 0.92934 0.93255 1.20901 1.04974 1.37876 0.90502 0.93167 1.25694 1.00759 0.95243 0.95360 1.70016 1.40675 1.47629 0.99628 0.86052 0.80803 0.79705 0.78572 1.18590 1.21558 1.17227 1.23058 1.00292 0.83236 0.93783 0.87333 0.86012 0.90146 0.92203 0.88705 0.91871 0.92357 0.89255 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.25 71.23 0.73 -0.63 16 2 C 0.17 3.59 7.29 42.15 0.31 3.90 16 3 N -0.42 -7.84 7.28 -46.79 -0.34 -8.18 16 4 H 0.47 4.14 8.96 -213.43 -1.91 2.22 16 5 N -0.29 -7.83 12.64 -48.96 -0.62 -8.45 16 6 C 0.15 4.53 7.89 85.66 0.68 5.21 16 7 Cl 0.01 0.38 29.19 -2.72 -0.08 0.30 16 8 C -0.30 -9.22 5.70 -20.13 -0.11 -9.34 16 9 C 0.62 23.03 7.42 86.65 0.64 23.68 16 10 O -0.58 -25.10 17.88 -4.07 -0.07 -25.18 16 11 N -0.63 -23.31 3.69 -862.95 -3.19 -26.50 16 12 C 0.10 3.81 7.50 83.08 0.62 4.43 16 13 C -0.02 -0.87 2.98 -11.30 -0.03 -0.91 16 14 C -0.50 -25.79 9.38 25.60 0.24 -25.55 16 15 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 16 C 0.03 1.52 5.47 84.65 0.46 1.98 16 17 N -0.94 -54.53 13.96 21.45 0.30 -54.23 16 18 Si 0.92 40.79 27.42 68.60 1.88 42.67 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.25 -10.40 6.22 99.48 0.62 -9.78 16 22 C 0.12 4.52 8.19 83.16 0.68 5.20 16 23 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.08 1.42 7.96 -2.39 -0.02 1.40 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 3.34 8.10 -2.39 -0.02 3.32 16 28 H 0.06 2.75 6.50 -2.39 -0.02 2.74 16 29 H 0.27 14.61 8.31 -92.71 -0.77 13.83 16 30 H 0.09 3.27 8.10 -2.38 -0.02 3.26 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -68.94 293.12 1.27 -67.67 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -0.83 Total: 3.93 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 4.21 Total: 7.97 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.85 Total: -97.36 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.07 Total: -25.18 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.67 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.08 Total: 0.30 kcal Total: -68.94 1.27 -67.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864068632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.589 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds