Wall clock time and date at job start Mon Mar 30 2020 05:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99943 * 154.99835 * 11 9 7 13 13 O 1.21283 * 120.00516 * 0.02562 * 12 11 9 14 14 C 1.50709 * 119.99796 * 180.02562 * 12 11 9 15 15 C 1.53040 * 113.14755 * 280.54731 * 14 12 11 16 16 S 1.81498 * 89.86149 * 211.86939 * 15 14 12 17 17 C 1.53039 * 113.14949 * 180.12113 * 14 12 11 18 18 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 19 19 F 1.39897 * 109.46935 * 59.99980 * 18 9 7 20 20 F 1.39899 * 109.47307 * 180.02562 * 18 9 7 21 21 F 1.39901 * 109.47163 * 300.00307 * 18 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00208 * 335.00126 * 11 9 7 24 24 H 1.08994 * 112.49797 * 50.33256 * 14 12 11 25 25 H 1.09004 * 113.15130 * 327.11303 * 15 14 12 26 26 H 1.08999 * 113.14884 * 96.59800 * 15 14 12 27 27 H 1.08997 * 113.15051 * 263.40475 * 17 14 12 28 28 H 1.09009 * 113.15193 * 32.84334 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 0.4928 13 8 0.7191 -4.9701 0.9363 14 6 2.8164 -5.9576 0.4933 15 6 2.9410 -6.6433 -0.8692 16 16 3.2712 -8.2232 -0.0391 17 6 2.2370 -7.2445 1.0852 18 6 0.3709 -2.5799 -1.2494 19 9 1.1748 -2.5056 -2.3920 20 9 -0.3290 -3.7912 -1.2491 21 9 -0.5381 -1.5165 -1.2489 22 1 -0.4850 0.8401 0.0004 23 1 3.0968 -3.4866 -0.3555 24 1 3.7790 -5.6830 0.9245 25 1 2.0097 -6.6434 -1.4357 26 1 3.7860 -6.2818 -1.4551 27 1 2.4928 -7.3863 2.1353 28 1 1.1696 -7.3603 0.8968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800387.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:26 Heat of formation + Delta-G solvation = -154.453971 kcal Electronic energy + Delta-G solvation = -19546.819330 eV Core-core repulsion = 15889.503392 eV Total energy + Delta-G solvation = -3657.315938 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.044 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.42232 -46.08060 -45.67976 -39.52020 -35.71250 -34.66718 -32.63188 -28.67764 -26.30629 -24.72425 -23.93803 -21.22620 -19.77137 -17.91641 -16.94071 -16.90697 -16.69684 -16.12116 -15.92923 -15.12854 -14.97483 -14.44350 -13.75855 -13.27553 -13.01551 -12.99274 -12.70461 -12.52065 -12.46856 -12.35137 -12.10217 -11.96248 -11.85537 -11.25037 -10.96621 -10.91467 -10.87816 -10.61918 -10.46598 -9.75727 -9.29052 -8.78859 -8.39032 -7.87991 -6.29866 -4.54607 1.64235 1.80846 2.97370 3.15946 3.21236 3.22402 3.64469 4.15057 4.25903 4.48120 4.74990 4.81297 4.87304 5.21293 5.30011 5.34636 5.57724 5.76096 5.79722 5.85122 6.13556 6.83525 7.03692 7.38111 7.56335 8.17698 8.41696 8.71830 9.13574 10.61613 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.006048 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.736410 B = 4628.892861 C = 4969.085259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.244 3.756 10 H 0.086 0.914 11 N -0.705 5.705 12 C 0.518 3.482 13 O -0.529 6.529 14 C -0.117 4.117 15 C -0.066 4.066 16 S -0.300 6.300 17 C -0.056 4.056 18 C 0.417 3.583 19 F -0.209 7.209 20 F -0.218 7.218 21 F -0.136 7.136 22 H 0.269 0.731 23 H 0.400 0.600 24 H 0.131 0.869 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -7.568 -0.438 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.096 0.904 9 C 0.138 3.862 10 H 0.104 0.896 11 N -0.354 5.354 12 C 0.300 3.700 13 O -0.405 6.405 14 C -0.141 4.141 15 C -0.215 4.215 16 S -0.074 6.074 17 C -0.204 4.204 18 C 0.360 3.640 19 F -0.191 7.191 20 F -0.200 7.200 21 F -0.117 7.117 22 H 0.080 0.920 23 H 0.234 0.766 24 H 0.149 0.851 25 H 0.129 0.871 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.383 -8.846 -0.291 10.359 hybrid contribution 0.140 1.858 -0.434 1.913 sum 5.524 -6.988 -0.724 8.937 Atomic orbital electron populations 1.70385 1.05881 1.27592 1.43341 1.25088 0.95162 1.00169 0.93967 0.86261 0.79342 0.81256 0.78943 1.20853 1.19750 1.19796 1.20828 0.93761 0.88056 1.56447 0.90428 1.19762 0.88748 0.85845 0.91805 0.89625 1.46074 1.17308 1.10417 1.61644 1.20108 0.88046 0.83480 0.78386 1.90720 1.20945 1.82779 1.46066 1.22760 1.01009 0.94215 0.96068 1.24205 1.06418 0.91609 0.99237 1.88880 1.66725 1.27467 1.24293 1.24160 1.02573 0.91491 1.02207 1.23146 0.80896 0.72816 0.87101 1.92991 1.74413 1.96180 1.55493 1.93067 1.81495 1.48484 1.96977 1.93410 1.68375 1.53758 1.96189 0.91981 0.76574 0.85067 0.87111 0.87670 0.88098 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.38 9.50 55.43 0.53 -21.85 15 2 C 0.07 1.64 5.20 -17.82 -0.09 1.55 15 3 Si 0.92 19.49 29.54 -169.99 -5.02 14.47 15 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.27 -5.68 7.11 56.52 0.40 -5.27 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.55 -13.50 8.46 -34.44 -0.29 -13.79 15 8 H 0.08 1.77 7.74 -52.49 -0.41 1.36 15 9 C 0.24 5.74 2.21 -69.09 -0.15 5.58 15 10 H 0.09 2.27 7.58 -51.92 -0.39 1.87 15 11 N -0.71 -13.10 4.99 -54.93 -0.27 -13.38 15 12 C 0.52 9.07 6.86 -10.98 -0.08 8.99 15 13 O -0.53 -11.31 14.52 5.56 0.08 -11.23 15 14 C -0.12 -1.48 3.82 -91.73 -0.35 -1.83 15 15 C -0.07 -0.78 7.49 37.18 0.28 -0.50 15 16 S -0.30 -3.76 24.80 -107.50 -2.67 -6.43 15 17 C -0.06 -0.69 7.18 37.18 0.27 -0.42 15 18 C 0.42 10.23 2.81 37.16 0.10 10.34 15 19 F -0.21 -4.92 16.94 2.25 0.04 -4.89 15 20 F -0.22 -5.28 15.68 2.25 0.04 -5.25 15 21 F -0.14 -3.67 12.91 2.25 0.03 -3.64 15 22 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 23 H 0.40 6.27 8.54 -40.82 -0.35 5.93 15 24 H 0.13 1.35 8.14 -51.93 -0.42 0.93 15 25 H 0.11 1.41 8.11 -51.93 -0.42 0.99 15 26 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 28 H 0.12 1.62 7.57 -51.92 -0.39 1.22 15 LS Contribution 266.49 15.07 4.02 4.02 Total: -1.00 -28.51 266.49 -5.91 -34.42 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -2.37 Total: 3.83 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.31 Total: 9.92 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.25 Total: -35.23 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 9 Polarization: -13.87 SS G_CDS: 0.10 Total: -13.77 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -2.67 Total: -6.43 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.51 -5.91 -34.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800387.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.030 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds