Wall clock time and date at job start Mon Mar 30 2020 05:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99943 * 154.99835 * 11 9 7 13 13 O 1.21283 * 120.00516 * 0.02562 * 12 11 9 14 14 C 1.50709 * 119.99796 * 180.02562 * 12 11 9 15 15 C 1.53040 * 113.14755 * 280.54731 * 14 12 11 16 16 S 1.81498 * 89.86149 * 211.86939 * 15 14 12 17 17 C 1.53039 * 113.14949 * 180.12113 * 14 12 11 18 18 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 19 19 F 1.39897 * 109.46935 * 59.99980 * 18 9 7 20 20 F 1.39899 * 109.47307 * 180.02562 * 18 9 7 21 21 F 1.39901 * 109.47163 * 300.00307 * 18 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00208 * 335.00126 * 11 9 7 24 24 H 1.08994 * 112.49797 * 50.33256 * 14 12 11 25 25 H 1.09004 * 113.15130 * 327.11303 * 15 14 12 26 26 H 1.08999 * 113.14884 * 96.59800 * 15 14 12 27 27 H 1.08997 * 113.15051 * 263.40475 * 17 14 12 28 28 H 1.09009 * 113.15193 * 32.84334 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 0.4928 13 8 0.7191 -4.9701 0.9363 14 6 2.8164 -5.9576 0.4933 15 6 2.9410 -6.6433 -0.8692 16 16 3.2712 -8.2232 -0.0391 17 6 2.2370 -7.2445 1.0852 18 6 0.3709 -2.5799 -1.2494 19 9 1.1748 -2.5056 -2.3920 20 9 -0.3290 -3.7912 -1.2491 21 9 -0.5381 -1.5165 -1.2489 22 1 -0.4850 0.8401 0.0004 23 1 3.0968 -3.4866 -0.3555 24 1 3.7790 -5.6830 0.9245 25 1 2.0097 -6.6434 -1.4357 26 1 3.7860 -6.2818 -1.4551 27 1 2.4928 -7.3863 2.1353 28 1 1.1696 -7.3603 0.8968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928800387.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:25 Heat of formation + Delta-G solvation = -172.532055 kcal Electronic energy + Delta-G solvation = -19547.603254 eV Core-core repulsion = 15889.503392 eV Total energy + Delta-G solvation = -3658.099862 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.39995 -48.03519 -47.71115 -40.93933 -36.99704 -36.25848 -34.43316 -30.45010 -27.27525 -26.62192 -25.35371 -22.96004 -21.24308 -19.41059 -18.84764 -18.65971 -18.54913 -17.67048 -17.16717 -16.77447 -16.38861 -15.97698 -15.12942 -14.95745 -14.92305 -14.49468 -14.42864 -14.27260 -14.02386 -13.98539 -13.86822 -13.70235 -13.09498 -13.00533 -12.74262 -12.60084 -12.21447 -11.87106 -11.76545 -11.58451 -10.68254 -10.66243 -10.07027 -8.87278 -8.19960 -6.50575 0.65653 0.81115 1.48939 1.49914 1.58850 1.59875 2.18289 2.40677 2.55423 2.95781 3.21113 3.63908 3.76341 3.81555 3.90109 4.03097 4.25187 4.33131 4.46367 4.63930 4.85728 4.93573 5.40792 5.55647 5.66425 6.54200 6.69978 7.18147 7.33372 8.72230 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.006048 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.736410 B = 4628.892861 C = 4969.085259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.981 3.019 4 H -0.288 1.288 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.561 4.561 8 H 0.095 0.905 9 C 0.250 3.750 10 H 0.049 0.951 11 N -0.699 5.699 12 C 0.517 3.483 13 O -0.571 6.571 14 C -0.102 4.102 15 C -0.063 4.063 16 S -0.300 6.300 17 C -0.058 4.058 18 C 0.413 3.587 19 F -0.202 7.202 20 F -0.219 7.219 21 F -0.152 7.152 22 H 0.268 0.732 23 H 0.417 0.583 24 H 0.166 0.834 25 H 0.098 0.902 26 H 0.131 0.869 27 H 0.117 0.883 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 -7.722 -0.594 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.597 4.597 8 H 0.113 0.887 9 C 0.143 3.857 10 H 0.067 0.933 11 N -0.350 5.350 12 C 0.301 3.699 13 O -0.450 6.450 14 C -0.125 4.125 15 C -0.211 4.211 16 S -0.073 6.073 17 C -0.206 4.206 18 C 0.357 3.643 19 F -0.184 7.184 20 F -0.201 7.201 21 F -0.134 7.134 22 H 0.078 0.922 23 H 0.254 0.746 24 H 0.183 0.817 25 H 0.117 0.883 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.714 -9.031 -0.455 11.886 hybrid contribution -0.605 1.827 -0.393 1.964 sum 7.109 -7.204 -0.848 10.157 Atomic orbital electron populations 1.70525 1.07488 1.28164 1.44712 1.25982 0.95840 1.03670 0.93544 0.85247 0.78002 0.76931 0.79384 1.21331 1.18637 1.19065 1.21210 0.94632 0.88272 1.55607 0.88714 1.19334 0.89011 0.87603 0.89758 0.93330 1.45922 1.17259 1.09752 1.62019 1.20945 0.88289 0.83916 0.76735 1.90706 1.23217 1.83453 1.47639 1.22837 1.00753 0.91730 0.97134 1.24203 1.06982 0.91072 0.98852 1.88940 1.66239 1.27792 1.24376 1.24143 1.01743 0.91377 1.03359 1.23329 0.80858 0.72357 0.87787 1.92990 1.74096 1.96142 1.55172 1.93061 1.81609 1.48396 1.97021 1.93378 1.69045 1.54629 1.96318 0.92240 0.74624 0.81702 0.88306 0.85076 0.86469 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.28 9.50 21.45 0.20 -47.07 15 2 C 0.02 0.75 5.20 84.66 0.44 1.19 15 3 Si 0.98 39.14 29.54 68.60 2.03 41.17 15 4 H -0.29 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.27 -10.25 7.11 99.48 0.71 -9.55 15 7 C -0.56 -26.82 8.46 25.60 0.22 -26.60 15 8 H 0.09 4.10 7.74 -2.91 -0.02 4.08 15 9 C 0.25 11.80 2.21 44.24 0.10 11.89 15 10 H 0.05 2.67 7.58 -2.38 -0.02 2.65 15 11 N -0.70 -25.13 4.99 -446.09 -2.22 -27.35 15 12 C 0.52 17.57 6.86 87.66 0.60 18.17 15 13 O -0.57 -24.66 14.52 -3.04 -0.04 -24.71 15 14 C -0.10 -2.31 3.82 -11.51 -0.04 -2.36 15 15 C -0.06 -1.31 7.49 72.00 0.54 -0.77 15 16 S -0.30 -6.81 24.80 -56.49 -1.40 -8.21 15 17 C -0.06 -1.33 7.18 71.99 0.52 -0.81 15 18 C 0.41 20.42 2.81 71.98 0.20 20.62 15 19 F -0.20 -9.38 16.94 44.97 0.76 -8.62 15 20 F -0.22 -10.73 15.68 44.97 0.70 -10.02 15 21 F -0.15 -8.37 12.91 44.97 0.58 -7.79 15 22 H 0.27 13.83 8.31 -92.71 -0.77 13.06 15 23 H 0.42 12.05 8.54 -92.71 -0.79 11.26 15 24 H 0.17 2.71 8.14 -2.39 -0.02 2.69 15 25 H 0.10 2.36 8.11 -2.38 -0.02 2.34 15 26 H 0.13 2.10 8.14 -2.39 -0.02 2.08 15 27 H 0.12 2.30 8.14 -2.39 -0.02 2.28 15 28 H 0.10 2.73 7.57 -2.38 -0.02 2.71 15 Total: -1.00 -61.39 266.49 3.60 -57.79 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.42 Total: 13.48 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 2.57 Total: 21.33 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -2.02 Total: -74.42 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.71 kcal Atomic # 9 Polarization: -28.48 SS G_CDS: 2.05 Total: -26.43 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -1.40 Total: -8.21 kcal Total: -61.39 3.60 -57.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800387.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.745 kcal (2) G-P(sol) polarization free energy of solvation -61.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds