Wall clock time and date at job start Mon Mar 30 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 120.00285 * 2 1 4 4 C 1.38206 * 119.99988 * 179.79162 * 3 2 1 5 5 C 1.38260 * 120.00149 * 0.41989 * 4 3 2 6 6 C 1.50703 * 120.00035 * 179.81064 * 5 4 3 7 7 H 1.09007 * 109.46560 * 199.72660 * 6 5 4 8 8 N 1.46898 * 109.47348 * 319.72377 * 6 5 4 9 9 C 1.50701 * 109.47151 * 79.73016 * 6 5 4 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99694 * 180.27762 * 9 6 5 12 12 N 1.31523 * 119.99908 * 179.72112 * 11 9 6 13 13 Si 1.86800 * 120.00405 * 359.71709 * 11 9 6 14 14 H 1.48500 * 109.47210 * 90.00069 * 13 11 9 15 15 H 1.48504 * 109.47424 * 210.00300 * 13 11 9 16 16 H 1.48502 * 109.46888 * 330.00390 * 13 11 9 17 17 C 1.38207 * 119.99768 * 359.53598 * 5 4 3 18 18 C 1.38212 * 119.99483 * 179.97438 * 2 1 3 19 19 S 1.76202 * 120.00512 * 359.97438 * 18 2 1 20 20 C 1.81401 * 104.44858 * 295.02508 * 19 18 2 21 21 O 1.42098 * 104.27528 * 51.09349 * 19 18 2 22 22 O 1.42097 * 104.27857 * 178.95514 * 19 18 2 23 23 H 1.08998 * 109.47222 * 270.02188 * 1 2 3 24 24 H 1.09000 * 109.47160 * 30.02124 * 1 2 3 25 25 H 1.09000 * 109.47884 * 150.02166 * 1 2 3 26 26 H 1.08003 * 120.00233 * 0.02562 * 3 2 1 27 27 H 1.08005 * 120.00455 * 180.23311 * 4 3 2 28 28 H 1.00901 * 110.99361 * 59.99871 * 8 6 5 29 29 H 1.00897 * 111.00235 * 183.95410 * 8 6 5 30 30 H 0.96995 * 120.00181 * 179.97438 * 12 11 9 31 31 H 1.08004 * 119.99915 * 180.25166 * 17 5 4 32 32 H 1.09003 * 109.46959 * 59.99946 * 20 19 18 33 33 H 1.09006 * 109.47134 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.47339 * 299.99767 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0044 5 6 4.2716 -0.0002 -0.0001 6 6 5.7787 -0.0002 0.0004 7 1 6.1420 -0.9663 -0.3502 8 7 6.2687 1.0599 -0.8907 9 6 6.2806 0.2477 1.3995 10 1 5.5785 0.3914 2.2075 11 6 7.6361 0.2973 1.6469 12 7 8.0741 0.5191 2.8670 13 14 8.8504 0.0494 0.2493 14 1 9.1671 1.3615 -0.3699 15 1 10.0960 -0.5619 0.7783 16 1 8.2532 -0.8484 -0.7718 17 6 3.5806 -1.1971 0.0009 18 6 2.1979 -1.1970 0.0005 19 16 1.3169 -2.7230 0.0019 20 6 0.4477 -2.7423 1.5940 21 8 0.3923 -2.5947 -1.0694 22 8 2.3341 -3.7149 -0.0229 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3635 -0.8901 -0.5135 26 1 1.6584 2.1326 0.0004 27 1 4.1205 2.1325 0.0082 28 1 5.9450 1.9659 -0.5868 29 1 7.2752 1.0392 -0.9580 30 1 9.0277 0.5537 3.0412 31 1 4.1206 -2.1324 0.0015 32 1 -0.2231 -1.8851 1.6521 33 1 -0.1305 -3.6623 1.6811 34 1 1.1740 -2.6911 2.4052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260069469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:40 Heat of formation + Delta-G solvation = -38.035632 kcal Electronic energy + Delta-G solvation = -18679.459243 eV Core-core repulsion = 15704.881418 eV Total energy + Delta-G solvation = -2974.577825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.23507 -37.11283 -35.86435 -35.40614 -32.48902 -31.41624 -30.87371 -29.46985 -27.34421 -25.65724 -22.93610 -22.24546 -20.52272 -18.63926 -17.18109 -16.77802 -16.27501 -16.00365 -15.64826 -15.19532 -14.65711 -14.20085 -14.12476 -13.70782 -13.34203 -13.10030 -13.03553 -12.65277 -12.43392 -12.08575 -11.97024 -11.86883 -11.77468 -11.57599 -11.32717 -10.95883 -10.87272 -10.71539 -10.19171 -10.13273 -9.62224 -8.88845 -8.85835 -8.25872 -7.56878 -6.31518 -4.36225 0.15694 1.26710 1.76114 2.98139 3.08066 3.23879 3.24634 3.75626 4.05389 4.16687 4.26353 4.69263 4.84997 4.92395 4.99010 5.09780 5.35106 5.45358 5.48177 5.57797 5.75996 5.84367 5.86908 6.00916 6.14697 6.39818 6.44342 6.69755 6.78541 7.11979 7.36572 7.37752 7.95768 8.17366 8.38513 8.73756 9.27133 10.80775 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.027394 B = 0.005777 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.865270 B = 4845.902351 C = 5201.681379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.016 4.016 3 C -0.143 4.143 4 C -0.048 4.048 5 C -0.041 4.041 6 C 0.204 3.796 7 H 0.055 0.945 8 N -0.849 5.849 9 C -0.550 4.550 10 H 0.077 0.923 11 C 0.075 3.925 12 N -0.887 5.887 13 Si 0.872 3.128 14 H -0.274 1.274 15 H -0.289 1.289 16 H -0.257 1.257 17 C -0.021 4.021 18 C -0.658 4.658 19 S 2.500 3.500 20 C -0.655 4.655 21 O -0.943 6.943 22 O -0.941 6.941 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.330 0.670 29 H 0.320 0.680 30 H 0.267 0.733 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 -1.876 -3.063 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 C -0.162 4.162 4 C -0.067 4.067 5 C -0.043 4.043 6 C 0.095 3.905 7 H 0.072 0.928 8 N -0.382 5.382 9 C -0.589 4.589 10 H 0.095 0.905 11 C -0.129 4.129 12 N -0.524 5.524 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.182 1.182 17 C -0.041 4.041 18 C -0.746 4.746 19 S 2.682 3.318 20 C -0.805 4.805 21 O -0.940 6.940 22 O -0.938 6.938 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.141 0.859 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.034 -2.874 -4.163 15.862 hybrid contribution 1.486 1.141 1.022 2.134 sum -13.548 -1.734 -3.141 14.015 Atomic orbital electron populations 1.21567 0.91512 1.06314 1.02926 1.19280 0.94886 0.92220 0.95352 1.21042 0.94453 0.97132 1.03547 1.21246 0.93456 0.98660 0.93319 1.20152 0.97019 0.92180 0.94951 1.18543 0.86992 0.92985 0.91984 0.92765 1.59728 1.14449 1.08139 1.55931 1.21593 0.92916 1.50842 0.93552 0.90514 1.25025 0.98286 0.93949 0.95683 1.69887 1.14901 1.47919 1.19670 0.87010 0.81135 0.79148 0.82620 1.20096 1.21561 1.18205 1.20818 0.91271 0.99475 0.92517 1.29922 1.05831 1.17527 1.21362 1.04964 0.75221 0.74550 0.77061 1.30304 1.15129 1.11529 1.23554 1.93512 1.64581 1.86121 1.49783 1.93563 1.56224 1.57383 1.86637 0.90612 0.90079 0.88358 0.85924 0.85525 0.85746 0.86414 0.92246 0.84105 0.85009 0.85269 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.46 36.01 0.30 -1.49 16 2 C -0.02 -0.24 5.86 -104.63 -0.61 -0.85 16 3 C -0.14 -2.18 9.70 -39.59 -0.38 -2.56 16 4 C -0.05 -0.87 9.29 -39.59 -0.37 -1.24 16 5 C -0.04 -0.85 4.89 -104.62 -0.51 -1.36 16 6 C 0.20 4.72 2.48 -70.02 -0.17 4.55 16 7 H 0.05 1.31 7.07 -51.93 -0.37 0.94 16 8 N -0.85 -18.15 8.98 -6.65 -0.06 -18.21 16 9 C -0.55 -14.70 9.28 -34.44 -0.32 -15.02 16 10 H 0.08 2.24 7.98 -52.49 -0.42 1.83 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 12 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 13 Si 0.87 20.50 24.61 -169.99 -4.18 16.31 16 14 H -0.27 -6.16 7.00 56.52 0.40 -5.76 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.26 -5.93 6.55 56.52 0.37 -5.56 16 17 C -0.02 -0.41 9.12 -39.58 -0.36 -0.77 16 18 C -0.66 -10.52 5.58 -39.58 -0.22 -10.74 16 19 S 2.50 33.10 5.20 -107.50 -0.56 32.54 16 20 C -0.66 -5.50 10.59 101.05 1.07 -4.43 16 21 O -0.94 -14.08 15.36 -57.54 -0.88 -14.96 16 22 O -0.94 -15.68 16.74 -57.54 -0.96 -16.65 16 23 H 0.08 0.61 7.10 -51.93 -0.37 0.24 16 24 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.10 1.08 4.90 -51.93 -0.25 0.83 16 26 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 27 H 0.13 2.15 6.68 -52.48 -0.35 1.79 16 28 H 0.33 6.54 7.35 -39.29 -0.29 6.26 16 29 H 0.32 6.97 4.28 -39.29 -0.17 6.81 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.14 2.67 7.19 -52.48 -0.38 2.29 16 32 H 0.13 0.87 6.01 -51.92 -0.31 0.56 16 33 H 0.13 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.14 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -33.59 285.52 -7.01 -40.60 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -3.77 Total: 13.18 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: -1.68 Total: -31.96 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.71 Total: -43.38 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.85 Total: -31.61 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.18 Total: 16.31 kcal Atomic # 16 Polarization: 33.10 SS G_CDS: -0.56 Total: 32.54 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.59 -7.01 -40.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.567 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds