Wall clock time and date at job start Mon Mar 30 2020 04:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 120.00285 * 2 1 4 4 C 1.38206 * 119.99988 * 179.79162 * 3 2 1 5 5 C 1.38260 * 120.00149 * 0.41989 * 4 3 2 6 6 C 1.50703 * 120.00035 * 179.81064 * 5 4 3 7 7 H 1.09007 * 109.46560 * 199.72660 * 6 5 4 8 8 N 1.46898 * 109.47348 * 319.72377 * 6 5 4 9 9 C 1.50701 * 109.47151 * 79.73016 * 6 5 4 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99694 * 180.27762 * 9 6 5 12 12 N 1.31523 * 119.99908 * 179.72112 * 11 9 6 13 13 Si 1.86800 * 120.00405 * 359.71709 * 11 9 6 14 14 H 1.48500 * 109.47210 * 90.00069 * 13 11 9 15 15 H 1.48504 * 109.47424 * 210.00300 * 13 11 9 16 16 H 1.48502 * 109.46888 * 330.00390 * 13 11 9 17 17 C 1.38207 * 119.99768 * 359.53598 * 5 4 3 18 18 C 1.38212 * 119.99483 * 179.97438 * 2 1 3 19 19 S 1.76202 * 120.00512 * 359.97438 * 18 2 1 20 20 C 1.81401 * 104.44858 * 295.02508 * 19 18 2 21 21 O 1.42098 * 104.27528 * 51.09349 * 19 18 2 22 22 O 1.42097 * 104.27857 * 178.95514 * 19 18 2 23 23 H 1.08998 * 109.47222 * 270.02188 * 1 2 3 24 24 H 1.09000 * 109.47160 * 30.02124 * 1 2 3 25 25 H 1.09000 * 109.47884 * 150.02166 * 1 2 3 26 26 H 1.08003 * 120.00233 * 0.02562 * 3 2 1 27 27 H 1.08005 * 120.00455 * 180.23311 * 4 3 2 28 28 H 1.00901 * 110.99361 * 59.99871 * 8 6 5 29 29 H 1.00897 * 111.00235 * 183.95410 * 8 6 5 30 30 H 0.96995 * 120.00181 * 179.97438 * 12 11 9 31 31 H 1.08004 * 119.99915 * 180.25166 * 17 5 4 32 32 H 1.09003 * 109.46959 * 59.99946 * 20 19 18 33 33 H 1.09006 * 109.47134 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.47339 * 299.99767 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0044 5 6 4.2716 -0.0002 -0.0001 6 6 5.7787 -0.0002 0.0004 7 1 6.1420 -0.9663 -0.3502 8 7 6.2687 1.0599 -0.8907 9 6 6.2806 0.2477 1.3995 10 1 5.5785 0.3914 2.2075 11 6 7.6361 0.2973 1.6469 12 7 8.0741 0.5191 2.8670 13 14 8.8504 0.0494 0.2493 14 1 9.1671 1.3615 -0.3699 15 1 10.0960 -0.5619 0.7783 16 1 8.2532 -0.8484 -0.7718 17 6 3.5806 -1.1971 0.0009 18 6 2.1979 -1.1970 0.0005 19 16 1.3169 -2.7230 0.0019 20 6 0.4477 -2.7423 1.5940 21 8 0.3923 -2.5947 -1.0694 22 8 2.3341 -3.7149 -0.0229 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3635 -0.8901 -0.5135 26 1 1.6584 2.1326 0.0004 27 1 4.1205 2.1325 0.0082 28 1 5.9450 1.9659 -0.5868 29 1 7.2752 1.0392 -0.9580 30 1 9.0277 0.5537 3.0412 31 1 4.1206 -2.1324 0.0015 32 1 -0.2231 -1.8851 1.6521 33 1 -0.1305 -3.6623 1.6811 34 1 1.1740 -2.6911 2.4052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260069469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:39 Heat of formation + Delta-G solvation = -65.353880 kcal Electronic energy + Delta-G solvation = -18680.643851 eV Core-core repulsion = 15704.881418 eV Total energy + Delta-G solvation = -2975.762433 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56127 -38.24823 -37.12814 -36.93951 -34.29487 -32.95022 -32.15523 -30.25863 -28.82157 -27.35333 -24.23913 -23.79734 -21.92236 -19.76593 -19.18461 -18.18827 -17.47965 -17.19177 -16.97396 -16.65637 -16.22965 -15.66742 -15.22676 -14.99444 -14.72567 -14.31665 -14.05110 -13.91784 -13.75753 -13.44138 -13.25018 -13.17845 -13.07914 -12.89593 -12.75341 -12.59476 -12.30458 -11.91635 -11.88258 -11.59137 -11.34431 -10.95573 -10.17689 -9.74361 -9.26802 -8.45056 -6.53721 -0.82494 -0.02179 0.43546 1.19064 1.29461 1.37852 1.92381 2.16703 2.55400 2.87569 2.97609 3.27474 3.76069 3.88996 3.90211 4.10525 4.19911 4.22799 4.33767 4.47814 4.58844 4.72287 4.77841 4.93426 4.97957 5.02314 5.23854 5.31953 5.34770 5.44437 5.68435 5.96873 6.04020 6.30780 6.50054 6.63926 7.13279 8.70671 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.027394 B = 0.005777 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.865270 B = 4845.902351 C = 5201.681379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.008 4.008 3 C -0.141 4.141 4 C -0.063 4.063 5 C -0.079 4.079 6 C 0.211 3.789 7 H 0.037 0.963 8 N -0.838 5.838 9 C -0.549 4.549 10 H 0.037 0.963 11 C 0.022 3.978 12 N -0.933 5.933 13 Si 0.934 3.066 14 H -0.251 1.251 15 H -0.289 1.289 16 H -0.253 1.253 17 C -0.048 4.048 18 C -0.666 4.666 19 S 2.501 3.499 20 C -0.626 4.626 21 O -0.962 6.962 22 O -0.986 6.986 23 H 0.113 0.887 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.161 0.839 27 H 0.129 0.871 28 H 0.340 0.660 29 H 0.318 0.682 30 H 0.270 0.730 31 H 0.124 0.876 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.549 -1.328 -3.401 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 C -0.159 4.159 4 C -0.081 4.081 5 C -0.081 4.081 6 C 0.101 3.899 7 H 0.055 0.945 8 N -0.372 5.372 9 C -0.588 4.588 10 H 0.056 0.944 11 C -0.178 4.178 12 N -0.572 5.572 13 Si 0.759 3.241 14 H -0.176 1.176 15 H -0.216 1.216 16 H -0.178 1.178 17 C -0.067 4.067 18 C -0.752 4.752 19 S 2.685 3.315 20 C -0.780 4.780 21 O -0.960 6.960 22 O -0.984 6.984 23 H 0.132 0.868 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.178 0.822 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.778 -2.284 -4.561 18.496 hybrid contribution 2.129 0.943 1.222 2.630 sum -15.649 -1.341 -3.339 16.057 Atomic orbital electron populations 1.21759 0.87977 1.07354 1.05634 1.19877 0.97352 0.91245 0.92468 1.21472 0.93322 0.99165 1.01978 1.21380 0.95087 0.97702 0.93943 1.20023 0.95566 0.93985 0.98493 1.18314 0.89372 0.92489 0.89757 0.94502 1.59666 1.14196 1.08313 1.55032 1.21793 0.92433 1.50035 0.94562 0.94427 1.25833 1.00216 0.93692 0.98076 1.70023 1.15450 1.49816 1.21900 0.86015 0.78367 0.80138 0.79588 1.17628 1.21641 1.17781 1.20782 0.93083 0.98408 0.94457 1.30369 1.04707 1.19990 1.20130 1.04964 0.74589 0.72808 0.79114 1.30099 1.15102 1.14846 1.18003 1.93484 1.64036 1.85782 1.52650 1.93509 1.58450 1.58223 1.88183 0.86834 0.88086 0.88384 0.82156 0.85271 0.84699 0.86644 0.92077 0.85774 0.82041 0.81800 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 8.46 71.24 0.60 -2.26 16 2 C -0.01 -0.22 5.86 -19.87 -0.12 -0.34 16 3 C -0.14 -3.97 9.70 22.27 0.22 -3.76 16 4 C -0.06 -2.25 9.29 22.27 0.21 -2.05 16 5 C -0.08 -3.37 4.89 -19.87 -0.10 -3.47 16 6 C 0.21 10.10 2.48 43.42 0.11 10.21 16 7 H 0.04 1.87 7.07 -2.38 -0.02 1.85 16 8 N -0.84 -36.04 8.98 -174.95 -1.57 -37.61 16 9 C -0.55 -30.70 9.28 25.60 0.24 -30.46 16 10 H 0.04 2.33 7.98 -2.91 -0.02 2.31 16 11 C 0.02 1.23 5.47 84.65 0.46 1.69 16 12 N -0.93 -56.43 13.96 21.45 0.30 -56.13 16 13 Si 0.93 43.03 24.61 68.60 1.69 44.71 16 14 H -0.25 -10.59 7.00 99.48 0.70 -9.89 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.25 -11.43 6.55 99.48 0.65 -10.78 16 17 C -0.05 -1.90 9.12 22.27 0.20 -1.70 16 18 C -0.67 -20.85 5.58 22.27 0.12 -20.73 16 19 S 2.50 62.70 5.20 -56.49 -0.29 62.41 16 20 C -0.63 -7.65 10.59 113.37 1.20 -6.45 16 21 O -0.96 -27.01 15.36 -127.65 -1.96 -28.97 16 22 O -0.99 -33.50 16.74 -127.65 -2.14 -35.64 16 23 H 0.11 1.10 7.10 -2.39 -0.02 1.09 16 24 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 25 H 0.10 1.74 4.90 -2.39 -0.01 1.73 16 26 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.13 4.39 6.68 -2.91 -0.02 4.37 16 28 H 0.34 13.49 7.35 -89.69 -0.66 12.83 16 29 H 0.32 13.66 4.28 -89.70 -0.38 13.28 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.12 5.14 7.19 -2.91 -0.02 5.12 16 32 H 0.16 1.12 6.01 -2.39 -0.01 1.10 16 33 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -77.60 285.52 -0.79 -78.39 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.04 Total: 32.14 kcal Atomic # 6 Polarization: -62.45 SS G_CDS: 3.15 Total: -59.30 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -1.27 Total: -93.75 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -4.10 Total: -64.61 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.69 Total: 44.71 kcal Atomic # 16 Polarization: 62.70 SS G_CDS: -0.29 Total: 62.41 kcal Total: -77.60 -0.79 -78.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.038 kcal (2) G-P(sol) polarization free energy of solvation -77.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds