Wall clock time and date at job start Mon Mar 30 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48506 * 109.46709 * 269.99908 * 3 2 1 5 5 H 1.48498 * 109.47226 * 29.99294 * 3 2 1 6 6 H 1.48496 * 109.47567 * 149.99758 * 3 2 1 7 7 C 1.39583 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99825 * 0.02562 * 7 2 1 9 9 N 1.36120 * 120.00231 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99767 * 180.02562 * 9 7 2 11 11 O 1.21503 * 120.00518 * 0.02562 * 10 9 7 12 12 C 1.48838 * 120.00002 * 179.97438 * 10 9 7 13 13 O 1.21433 * 119.99774 * 353.29434 * 12 10 9 14 14 N 1.34771 * 120.00182 * 173.29020 * 12 10 9 15 15 C 1.46930 * 120.63115 * 353.03012 * 14 12 10 16 16 C 1.53197 * 108.76698 * 126.35902 * 15 14 12 17 17 C 1.53045 * 109.31044 * 54.65310 * 16 15 14 18 18 C 1.53036 * 109.52790 * 298.61895 * 17 16 15 19 19 H 1.09005 * 109.49587 * 301.38809 * 18 17 16 20 20 C 1.50699 * 109.49697 * 181.32445 * 18 17 16 21 21 N 1.34779 * 120.00094 * 179.97438 * 20 18 17 22 22 O 1.21286 * 119.99836 * 359.97438 * 20 18 17 23 23 C 1.46926 * 120.63130 * 173.00588 * 14 12 10 24 24 H 0.96997 * 120.00418 * 0.02562 * 1 2 3 25 25 H 0.96990 * 120.00255 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.58837 * 246.15349 * 15 14 12 27 27 H 1.09000 * 109.58349 * 6.44076 * 15 14 12 28 28 H 1.09006 * 109.50700 * 294.70167 * 16 15 14 29 29 H 1.08996 * 109.49050 * 174.60365 * 16 15 14 30 30 H 1.09003 * 109.45728 * 178.60012 * 17 16 15 31 31 H 1.09002 * 109.45507 * 58.63222 * 17 16 15 32 32 H 0.96994 * 119.99729 * 359.97438 * 21 20 18 33 33 H 0.96998 * 120.00049 * 179.97438 * 21 20 18 34 34 H 1.08998 * 109.58767 * 113.85003 * 23 14 12 35 35 H 1.08997 * 109.70052 * 353.48541 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0464 -1.4002 5 1 1.4415 2.6527 0.6999 6 1 3.5416 1.4403 0.7000 7 6 2.0081 -1.2088 0.0005 8 1 1.4682 -2.1441 0.0005 9 7 3.3693 -1.2087 0.0000 10 6 4.0432 -2.3759 0.0000 11 8 3.4358 -3.4282 0.0000 12 6 5.5316 -2.3759 -0.0011 13 8 6.1386 -1.3315 -0.1249 14 7 6.2056 -3.5350 0.1352 15 6 5.4934 -4.7840 0.4378 16 6 5.8774 -5.8360 -0.6076 17 6 7.4009 -5.9756 -0.6490 18 6 8.0262 -4.6395 -1.0563 19 1 7.6425 -4.3407 -2.0319 20 6 9.5242 -4.7865 -1.1285 21 7 10.2892 -3.7310 -1.4710 22 8 10.0415 -5.8546 -0.8783 23 6 7.6665 -3.5737 -0.0163 24 1 -0.4850 0.8400 -0.0004 25 1 3.8543 -0.3687 -0.0004 26 1 5.7761 -5.1347 1.4303 27 1 4.4181 -4.6086 0.4047 28 1 5.5138 -5.5254 -1.5871 29 1 5.4314 -6.7939 -0.3404 30 1 7.6758 -6.7414 -1.3744 31 1 7.7662 -6.2619 0.3373 32 1 9.8754 -2.8769 -1.6715 33 1 11.2535 -3.8255 -1.5171 34 1 8.1264 -3.8258 0.9392 35 1 8.0272 -2.6009 -0.3503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:29 Heat of formation + Delta-G solvation = -96.404144 kcal Electronic energy + Delta-G solvation = -20895.259779 eV Core-core repulsion = 17507.690786 eV Total energy + Delta-G solvation = -3387.568994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55601 -39.55114 -37.70388 -36.83889 -34.54643 -33.92753 -32.60461 -31.95485 -31.02610 -26.65005 -25.05796 -24.49237 -22.24294 -21.29338 -19.95595 -19.46741 -18.51242 -17.58102 -16.86663 -16.52449 -16.16032 -15.46856 -15.31198 -15.07552 -14.48111 -14.17625 -13.85063 -13.70965 -13.52976 -13.28936 -13.08321 -12.61729 -12.42598 -12.23747 -11.54101 -11.37313 -11.18367 -10.91977 -10.75156 -10.64064 -10.30856 -10.12351 -10.10863 -9.90635 -9.85422 -8.56325 -8.48084 -8.00884 -6.69967 -4.11697 2.13498 2.42055 2.96765 2.99001 3.02451 3.06220 3.38662 3.86193 4.00030 4.42870 4.59885 4.70333 4.74938 5.01699 5.14094 5.22925 5.35425 5.40400 5.60534 5.66469 5.72973 5.95908 6.01418 6.08108 6.43134 6.51639 6.56086 6.82755 7.09238 7.16088 7.52751 7.81265 8.04692 8.14024 8.39340 8.63083 9.07453 9.50828 10.39342 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.004658 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.311769 B = 6010.316149 C = 6681.929062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.055 3.945 3 Si 0.876 3.124 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.309 4.309 8 H 0.130 0.870 9 N -0.517 5.517 10 C 0.400 3.600 11 O -0.563 6.563 12 C 0.517 3.483 13 O -0.553 6.553 14 N -0.588 5.588 15 C 0.043 3.957 16 C -0.129 4.129 17 C -0.101 4.101 18 C -0.124 4.124 19 H 0.103 0.897 20 C 0.527 3.473 21 N -0.856 5.856 22 O -0.543 6.543 23 C 0.120 3.880 24 H 0.283 0.717 25 H 0.385 0.615 26 H 0.054 0.946 27 H 0.175 0.825 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.404 0.596 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.521 -4.239 -1.828 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.154 4.154 3 Si 0.700 3.300 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.439 4.439 8 H 0.148 0.852 9 N -0.152 5.152 10 C 0.186 3.814 11 O -0.452 6.452 12 C 0.304 3.696 13 O -0.432 6.432 14 N -0.321 5.321 15 C -0.077 4.077 16 C -0.167 4.167 17 C -0.139 4.139 18 C -0.147 4.147 19 H 0.121 0.879 20 C 0.311 3.689 21 N -0.419 5.419 22 O -0.419 6.419 23 C -0.004 4.004 24 H 0.094 0.906 25 H 0.220 0.780 26 H 0.072 0.928 27 H 0.190 0.810 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.233 0.767 33 H 0.230 0.770 34 H 0.088 0.912 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.381 -4.980 -1.689 15.312 hybrid contribution 1.011 1.664 -0.181 1.955 sum 15.391 -3.317 -1.870 15.855 Atomic orbital electron populations 1.69432 1.06165 1.28892 1.43400 1.25257 0.95557 0.98697 0.95937 0.86676 0.80421 0.82975 0.79902 1.18772 1.19404 1.18435 1.19607 0.79019 0.97222 1.48067 0.85220 1.41846 1.07682 1.06903 1.58777 1.18738 0.86465 0.85094 0.91086 1.90090 1.67791 1.28848 1.58493 1.20520 0.89777 0.82991 0.76344 1.90657 1.70740 1.31208 1.50564 1.47781 1.05829 1.08956 1.69528 1.23489 1.05709 0.82073 0.96427 1.21880 0.94477 0.99660 1.00678 1.21398 0.95497 0.94409 1.02555 1.21764 0.91392 0.99365 1.02142 0.87912 1.20565 0.89560 0.83590 0.75136 1.43947 1.11022 1.14027 1.72942 1.90733 1.75119 1.27137 1.48896 1.21430 0.82139 0.98794 0.98011 0.90584 0.78034 0.92758 0.80954 0.91403 0.90440 0.91216 0.91217 0.76727 0.76952 0.91203 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.46 13.94 55.53 0.77 -21.69 16 2 C 0.05 1.40 5.51 -17.40 -0.10 1.30 16 3 Si 0.88 18.44 27.74 -169.99 -4.72 13.73 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.29 6.53 56.52 0.37 -4.92 16 7 C -0.31 -8.18 10.16 -15.15 -0.15 -8.33 16 8 H 0.13 3.80 7.37 -52.49 -0.39 3.42 16 9 N -0.52 -12.34 5.05 -11.59 -0.06 -12.39 16 10 C 0.40 9.09 7.70 -11.87 -0.09 9.00 16 11 O -0.56 -13.49 12.66 5.36 0.07 -13.42 16 12 C 0.52 10.22 7.72 -11.87 -0.09 10.13 16 13 O -0.55 -11.45 15.94 5.42 0.09 -11.36 16 14 N -0.59 -9.55 2.97 -173.50 -0.52 -10.07 16 15 C 0.04 0.67 6.26 -3.71 -0.02 0.64 16 16 C -0.13 -1.65 6.08 -26.61 -0.16 -1.82 16 17 C -0.10 -1.22 4.46 -26.69 -0.12 -1.33 16 18 C -0.12 -1.44 2.68 -91.65 -0.25 -1.69 16 19 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 20 C 0.53 6.08 7.43 -10.98 -0.08 6.00 16 21 N -0.86 -6.71 8.78 31.22 0.27 -6.44 16 22 O -0.54 -8.21 16.82 5.55 0.09 -8.11 16 23 C 0.12 1.55 5.55 -3.71 -0.02 1.53 16 24 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 25 H 0.38 8.65 5.24 -40.82 -0.21 8.44 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.18 3.21 3.78 -56.82 -0.21 3.00 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.40 2.43 8.38 -40.82 -0.34 2.09 16 33 H 0.40 2.59 8.93 -40.82 -0.36 2.22 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.17 6.66 -51.93 -0.35 0.82 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -30.49 293.75 -4.64 -35.13 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -3.99 Total: 14.76 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -1.08 Total: 15.43 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.47 Total: -50.58 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: 0.25 Total: -32.90 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.72 Total: 13.73 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.49 -4.64 -35.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.275 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds