Wall clock time and date at job start Mon Mar 30 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48506 * 109.46709 * 269.99908 * 3 2 1 5 5 H 1.48498 * 109.47226 * 29.99294 * 3 2 1 6 6 H 1.48496 * 109.47567 * 149.99758 * 3 2 1 7 7 C 1.39583 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99825 * 0.02562 * 7 2 1 9 9 N 1.36120 * 120.00231 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99767 * 180.02562 * 9 7 2 11 11 O 1.21503 * 120.00518 * 0.02562 * 10 9 7 12 12 C 1.48838 * 120.00002 * 179.97438 * 10 9 7 13 13 O 1.21433 * 119.99774 * 353.29434 * 12 10 9 14 14 N 1.34771 * 120.00182 * 173.29020 * 12 10 9 15 15 C 1.46930 * 120.63115 * 353.03012 * 14 12 10 16 16 C 1.53197 * 108.76698 * 126.35902 * 15 14 12 17 17 C 1.53045 * 109.31044 * 54.65310 * 16 15 14 18 18 C 1.53036 * 109.52790 * 298.61895 * 17 16 15 19 19 H 1.09005 * 109.49587 * 301.38809 * 18 17 16 20 20 C 1.50699 * 109.49697 * 181.32445 * 18 17 16 21 21 N 1.34779 * 120.00094 * 179.97438 * 20 18 17 22 22 O 1.21286 * 119.99836 * 359.97438 * 20 18 17 23 23 C 1.46926 * 120.63130 * 173.00588 * 14 12 10 24 24 H 0.96997 * 120.00418 * 0.02562 * 1 2 3 25 25 H 0.96990 * 120.00255 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.58837 * 246.15349 * 15 14 12 27 27 H 1.09000 * 109.58349 * 6.44076 * 15 14 12 28 28 H 1.09006 * 109.50700 * 294.70167 * 16 15 14 29 29 H 1.08996 * 109.49050 * 174.60365 * 16 15 14 30 30 H 1.09003 * 109.45728 * 178.60012 * 17 16 15 31 31 H 1.09002 * 109.45507 * 58.63222 * 17 16 15 32 32 H 0.96994 * 119.99729 * 359.97438 * 21 20 18 33 33 H 0.96998 * 120.00049 * 179.97438 * 21 20 18 34 34 H 1.08998 * 109.58767 * 113.85003 * 23 14 12 35 35 H 1.08997 * 109.70052 * 353.48541 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0464 -1.4002 5 1 1.4415 2.6527 0.6999 6 1 3.5416 1.4403 0.7000 7 6 2.0081 -1.2088 0.0005 8 1 1.4682 -2.1441 0.0005 9 7 3.3693 -1.2087 0.0000 10 6 4.0432 -2.3759 0.0000 11 8 3.4358 -3.4282 0.0000 12 6 5.5316 -2.3759 -0.0011 13 8 6.1386 -1.3315 -0.1249 14 7 6.2056 -3.5350 0.1352 15 6 5.4934 -4.7840 0.4378 16 6 5.8774 -5.8360 -0.6076 17 6 7.4009 -5.9756 -0.6490 18 6 8.0262 -4.6395 -1.0563 19 1 7.6425 -4.3407 -2.0319 20 6 9.5242 -4.7865 -1.1285 21 7 10.2892 -3.7310 -1.4710 22 8 10.0415 -5.8546 -0.8783 23 6 7.6665 -3.5737 -0.0163 24 1 -0.4850 0.8400 -0.0004 25 1 3.8543 -0.3687 -0.0004 26 1 5.7761 -5.1347 1.4303 27 1 4.4181 -4.6086 0.4047 28 1 5.5138 -5.5254 -1.5871 29 1 5.4314 -6.7939 -0.3404 30 1 7.6758 -6.7414 -1.3744 31 1 7.7662 -6.2619 0.3373 32 1 9.8754 -2.8769 -1.6715 33 1 11.2535 -3.8255 -1.5171 34 1 8.1264 -3.8258 0.9392 35 1 8.0272 -2.6009 -0.3503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037242472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:29 Heat of formation + Delta-G solvation = -121.814536 kcal Electronic energy + Delta-G solvation = -20896.361657 eV Core-core repulsion = 17507.690786 eV Total energy + Delta-G solvation = -3388.670871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.91726 -40.78697 -39.32772 -38.22537 -36.36617 -34.78831 -34.12788 -33.62607 -32.10495 -28.34676 -26.57301 -25.60785 -23.71148 -22.46085 -21.43360 -20.86035 -20.03978 -18.64170 -18.20918 -17.75253 -17.46491 -17.05578 -16.72528 -16.45331 -16.01885 -15.37221 -15.29967 -14.94952 -14.78309 -14.69041 -14.56114 -14.41825 -13.86439 -13.43681 -13.07726 -12.69668 -12.54614 -12.47584 -12.04252 -11.99278 -11.77324 -11.67603 -11.54707 -11.10101 -10.69030 -10.47223 -9.83854 -9.68028 -8.61450 -6.15025 0.48203 1.30616 1.34432 1.38742 1.43716 1.69247 2.11108 2.26067 2.55219 2.87140 3.07619 3.54651 3.70765 3.74966 3.83992 4.08640 4.23393 4.32070 4.48431 4.56607 4.71076 4.87821 4.96885 5.07991 5.21936 5.27516 5.38344 5.45576 5.80582 5.87327 6.10770 6.29674 6.36987 6.62426 6.82661 7.15722 7.27411 7.65445 8.52493 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.004658 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.311769 B = 6010.316149 C = 6681.929062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.252 1.252 5 H -0.259 1.259 6 H -0.247 1.247 7 C -0.336 4.336 8 H 0.083 0.917 9 N -0.527 5.527 10 C 0.406 3.594 11 O -0.578 6.578 12 C 0.522 3.478 13 O -0.559 6.559 14 N -0.576 5.576 15 C 0.040 3.960 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.118 4.118 19 H 0.110 0.890 20 C 0.531 3.469 21 N -0.836 5.836 22 O -0.581 6.581 23 C 0.119 3.881 24 H 0.290 0.710 25 H 0.392 0.608 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.416 0.584 33 H 0.410 0.590 34 H 0.084 0.916 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.357 -3.594 -2.010 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.192 4.192 3 Si 0.765 3.235 4 H -0.177 1.177 5 H -0.183 1.183 6 H -0.171 1.171 7 C -0.466 4.466 8 H 0.101 0.899 9 N -0.164 5.164 10 C 0.191 3.809 11 O -0.467 6.467 12 C 0.307 3.693 13 O -0.439 6.439 14 N -0.308 5.308 15 C -0.080 4.080 16 C -0.158 4.158 17 C -0.134 4.134 18 C -0.140 4.140 19 H 0.128 0.872 20 C 0.315 3.685 21 N -0.399 5.399 22 O -0.460 6.460 23 C -0.004 4.004 24 H 0.101 0.899 25 H 0.229 0.771 26 H 0.091 0.909 27 H 0.160 0.840 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.247 0.753 33 H 0.242 0.758 34 H 0.102 0.898 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.235 -4.340 -1.881 17.873 hybrid contribution 0.226 1.246 -0.120 1.272 sum 17.461 -3.095 -2.002 17.846 Atomic orbital electron populations 1.69538 1.07904 1.30374 1.44872 1.26053 0.96302 1.02158 0.94728 0.85626 0.79440 0.77832 0.80573 1.17650 1.18331 1.17090 1.19199 0.80282 0.96160 1.50954 0.89922 1.41730 1.06697 1.07635 1.60339 1.19561 0.88267 0.84545 0.88478 1.90164 1.69270 1.29556 1.57704 1.19858 0.88141 0.84101 0.77209 1.90656 1.70264 1.31603 1.51343 1.47821 1.07439 1.08002 1.67560 1.23366 1.03815 0.82370 0.98463 1.21807 0.95397 0.99427 0.99209 1.21340 0.94447 0.94862 1.02737 1.21686 0.91820 0.98539 1.02001 0.87167 1.20421 0.89405 0.83659 0.74973 1.43786 1.11486 1.13618 1.71045 1.90732 1.75555 1.28717 1.51006 1.21678 0.79402 0.99942 0.99330 0.89931 0.77123 0.90888 0.84021 0.92281 0.88808 0.90769 0.91241 0.75331 0.75788 0.89795 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.01 13.94 21.76 0.30 -48.71 16 2 C 0.01 0.68 5.51 85.14 0.47 1.15 16 3 Si 0.95 37.67 27.74 68.60 1.90 39.57 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.25 -9.23 6.53 99.48 0.65 -8.58 16 7 C -0.34 -18.53 10.16 84.35 0.86 -17.67 16 8 H 0.08 5.21 7.37 -2.91 -0.02 5.19 16 9 N -0.53 -25.41 5.05 -308.87 -1.56 -26.97 16 10 C 0.41 18.54 7.70 87.08 0.67 19.22 16 11 O -0.58 -28.44 12.66 -3.73 -0.05 -28.49 16 12 C 0.52 19.85 7.72 87.08 0.67 20.52 16 13 O -0.56 -21.81 15.94 -3.50 -0.06 -21.87 16 14 N -0.58 -17.49 2.97 -821.17 -2.44 -19.93 16 15 C 0.04 1.18 6.26 86.36 0.54 1.72 16 16 C -0.12 -2.85 6.08 30.68 0.19 -2.67 16 17 C -0.10 -2.07 4.46 30.62 0.14 -1.93 16 18 C -0.12 -2.39 2.68 -11.46 -0.03 -2.42 16 19 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 20 C 0.53 10.69 7.43 87.66 0.65 11.34 16 21 N -0.84 -10.31 8.78 -173.53 -1.52 -11.83 16 22 O -0.58 -16.23 16.82 -3.05 -0.05 -16.28 16 23 C 0.12 2.69 5.55 86.36 0.48 3.17 16 24 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 25 H 0.39 17.35 5.24 -92.72 -0.49 16.87 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.14 5.26 3.78 -79.92 -0.30 4.96 16 28 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.58 8.07 -2.39 -0.02 1.56 16 31 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.42 3.45 8.38 -92.71 -0.78 2.68 16 33 H 0.41 3.98 8.93 -92.71 -0.83 3.15 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.10 2.19 6.66 -2.39 -0.02 2.17 16 Total: -1.00 -67.70 293.75 -0.11 -67.81 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -1.27 Total: 34.29 kcal Atomic # 6 Polarization: 27.78 SS G_CDS: 4.63 Total: 32.41 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -5.22 Total: -107.44 kcal Atomic # 8 Polarization: -66.49 SS G_CDS: -0.15 Total: -66.64 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 1.90 Total: 39.57 kcal Total: -67.70 -0.11 -67.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.004 kcal (2) G-P(sol) polarization free energy of solvation -67.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds