Wall clock time and date at job start Mon Mar 30 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86793 * 120.00241 * 2 1 4 4 H 1.48507 * 109.47393 * 239.99872 * 3 2 1 5 5 H 1.48493 * 109.47324 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47201 * 120.00006 * 3 2 1 7 7 C 1.39591 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.36119 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99790 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00527 * 359.97438 * 10 9 7 12 12 C 1.48837 * 120.00084 * 179.97438 * 10 9 7 13 13 O 1.21441 * 119.99610 * 353.19180 * 12 10 9 14 14 N 1.34771 * 120.00273 * 173.18898 * 12 10 9 15 15 C 1.46934 * 120.63109 * 351.26969 * 14 12 10 16 16 C 1.53194 * 108.77530 * 233.58487 * 15 14 12 17 17 C 1.53036 * 109.31117 * 305.36791 * 16 15 14 18 18 C 1.53035 * 109.54479 * 61.36703 * 17 16 15 19 19 H 1.08999 * 109.49774 * 58.58021 * 18 17 16 20 20 C 1.50693 * 109.50129 * 178.65357 * 18 17 16 21 21 N 1.34783 * 120.00077 * 180.02562 * 20 18 17 22 22 O 1.21284 * 119.99998 * 359.97438 * 20 18 17 23 23 C 1.46925 * 120.63162 * 171.24478 * 14 12 10 24 24 H 0.97002 * 119.99477 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99748 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.58369 * 113.79509 * 15 14 12 27 27 H 1.08995 * 109.58317 * 353.37369 * 15 14 12 28 28 H 1.08994 * 109.49290 * 185.41242 * 16 15 14 29 29 H 1.09004 * 109.49319 * 65.31703 * 16 15 14 30 30 H 1.09004 * 109.45577 * 181.39031 * 17 16 15 31 31 H 1.09009 * 109.45965 * 301.34184 * 17 16 15 32 32 H 0.96998 * 119.99933 * 359.97438 * 21 20 18 33 33 H 0.96995 * 119.99700 * 179.97438 * 21 20 18 34 34 H 1.09000 * 109.58758 * 6.63221 * 23 14 12 35 35 H 1.08997 * 109.58650 * 246.20366 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 3.0980 1.6963 -1.2125 5 1 1.2793 2.7464 0.0006 6 1 3.0980 1.6963 1.2125 7 6 2.0080 -1.2090 -0.0005 8 1 3.0880 -1.2090 -0.0001 9 7 1.3274 -2.3877 -0.0005 10 6 2.0012 -3.5549 -0.0005 11 8 3.2162 -3.5550 -0.0010 12 6 1.2570 -4.8439 0.0000 13 8 0.0491 -4.8475 0.1252 14 7 1.9236 -6.0070 -0.1384 15 6 3.3526 -6.0148 -0.4805 16 6 3.5594 -6.8990 -1.7143 17 6 2.9692 -8.2856 -1.4478 18 6 1.4660 -8.1612 -1.1894 19 1 0.9855 -7.6997 -2.0520 20 6 0.8801 -9.5304 -0.9598 21 7 -0.4377 -9.6666 -0.7115 22 8 1.5940 -10.5100 -0.9994 23 6 1.2355 -7.2913 0.0505 24 1 -0.4849 0.8401 -0.0004 25 1 0.3574 -2.3877 -0.0005 26 1 3.9263 -6.4143 0.3558 27 1 3.6813 -4.9989 -0.6996 28 1 4.6255 -6.9909 -1.9213 29 1 3.0591 -6.4493 -2.5720 30 1 3.1370 -8.9243 -2.3150 31 1 3.4527 -8.7244 -0.5749 32 1 -1.0088 -8.8832 -0.6802 33 1 -0.8149 -10.5480 -0.5641 34 1 0.1674 -7.1178 0.1815 35 1 1.6366 -7.7949 0.9300 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:33 Heat of formation + Delta-G solvation = -106.682395 kcal Electronic energy + Delta-G solvation = -20809.097545 eV Core-core repulsion = 17421.082853 eV Total energy + Delta-G solvation = -3388.014692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46046 -39.42432 -37.54606 -36.70030 -34.45609 -33.88263 -32.52072 -31.47789 -31.00405 -26.46586 -25.06488 -24.44816 -22.31206 -21.31593 -19.93124 -19.02682 -18.20647 -17.52512 -16.82684 -16.44509 -16.07374 -15.54249 -15.10480 -14.88247 -14.32223 -14.12249 -13.95765 -13.70719 -13.46233 -13.18401 -13.08994 -12.36352 -12.29190 -11.83835 -11.51638 -11.26589 -10.98777 -10.88467 -10.63516 -10.56530 -10.48102 -10.13099 -10.07193 -9.86036 -9.74076 -8.41726 -8.30432 -7.97663 -6.76157 -4.08401 2.31533 2.45882 3.07064 3.12266 3.12605 3.20070 3.44916 3.97632 4.14448 4.55245 4.69397 4.78905 4.85951 5.09003 5.17437 5.25614 5.40824 5.54372 5.66734 5.78077 5.89496 5.99635 6.04798 6.07621 6.41553 6.56537 6.60292 6.89113 7.14100 7.23041 7.59356 7.72380 8.09125 8.23950 8.49458 8.86594 9.21652 9.75379 10.38067 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040367 B = 0.004218 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.463068 B = 6636.473326 C = 7171.335835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.033 3.967 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.114 0.886 9 N -0.492 5.492 10 C 0.390 3.610 11 O -0.585 6.585 12 C 0.517 3.483 13 O -0.549 6.549 14 N -0.592 5.592 15 C 0.068 3.932 16 C -0.135 4.135 17 C -0.100 4.100 18 C -0.124 4.124 19 H 0.103 0.897 20 C 0.527 3.473 21 N -0.856 5.856 22 O -0.544 6.544 23 C 0.120 3.880 24 H 0.282 0.718 25 H 0.405 0.595 26 H 0.059 0.941 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.400 0.600 34 H 0.094 0.906 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -11.852 -2.245 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.132 0.868 9 N -0.124 5.124 10 C 0.175 3.825 11 O -0.476 6.476 12 C 0.304 3.696 13 O -0.427 6.427 14 N -0.326 5.326 15 C -0.053 4.053 16 C -0.174 4.174 17 C -0.138 4.138 18 C -0.146 4.146 19 H 0.121 0.879 20 C 0.312 3.688 21 N -0.419 5.419 22 O -0.420 6.420 23 C -0.004 4.004 24 H 0.093 0.907 25 H 0.241 0.759 26 H 0.077 0.923 27 H 0.174 0.826 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.234 0.766 33 H 0.230 0.770 34 H 0.112 0.888 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.589 -12.187 -2.231 12.404 hybrid contribution -0.808 0.564 0.097 0.990 sum -0.219 -11.624 -2.134 11.820 Atomic orbital electron populations 1.69475 1.06587 1.29670 1.44569 1.25618 0.95631 1.00599 0.95618 0.85759 0.78900 0.79149 0.79607 1.19270 1.20556 1.19289 1.19877 0.94058 0.81805 1.48019 0.86796 1.41580 1.10528 1.04237 1.56079 1.18851 0.87772 0.84154 0.91674 1.90263 1.12979 1.84936 1.59394 1.20661 0.87054 0.85685 0.76174 1.90666 1.14272 1.87571 1.50154 1.47774 1.11447 1.04016 1.69406 1.23005 0.79485 1.07012 0.95822 1.22006 1.01360 0.94824 0.99173 1.21373 0.92064 0.97508 1.02818 1.21756 0.99092 0.92642 1.01135 0.87916 1.20567 0.82099 0.91248 0.74918 1.43950 1.09680 1.13049 1.75232 1.90728 1.59922 1.40627 1.50749 1.21425 0.99582 0.83956 0.95392 0.90719 0.75946 0.92302 0.82624 0.90384 0.91650 0.91258 0.91138 0.76647 0.76980 0.88778 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.31 13.03 55.53 0.72 -21.59 16 2 C 0.03 0.82 5.51 -17.39 -0.10 0.73 16 3 Si 0.94 19.28 29.56 -169.99 -5.02 14.26 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.31 -8.06 9.67 -15.14 -0.15 -8.21 16 8 H 0.11 3.03 7.15 -52.49 -0.38 2.65 16 9 N -0.49 -12.53 5.24 -11.59 -0.06 -12.59 16 10 C 0.39 9.30 7.67 -11.88 -0.09 9.21 16 11 O -0.59 -14.43 12.74 5.36 0.07 -14.36 16 12 C 0.52 10.81 7.71 -11.88 -0.09 10.72 16 13 O -0.55 -12.14 15.92 5.42 0.09 -12.05 16 14 N -0.59 -10.06 2.97 -173.50 -0.52 -10.58 16 15 C 0.07 1.07 5.97 -3.71 -0.02 1.05 16 16 C -0.14 -1.73 6.08 -26.61 -0.16 -1.89 16 17 C -0.10 -1.22 4.46 -26.69 -0.12 -1.34 16 18 C -0.12 -1.49 2.67 -91.65 -0.25 -1.73 16 19 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 20 C 0.53 6.29 7.43 -10.99 -0.08 6.20 16 21 N -0.86 -7.11 8.78 31.22 0.27 -6.83 16 22 O -0.54 -8.39 16.82 5.55 0.09 -8.29 16 23 C 0.12 1.64 5.59 -3.71 -0.02 1.62 16 24 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 25 H 0.41 10.44 7.37 -40.82 -0.30 10.13 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.16 2.95 4.32 -54.84 -0.24 2.71 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.07 0.89 8.13 -51.92 -0.42 0.47 16 32 H 0.40 2.69 8.38 -40.82 -0.34 2.34 16 33 H 0.40 2.75 8.93 -40.82 -0.36 2.38 16 34 H 0.09 1.26 6.61 -51.93 -0.34 0.92 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -30.44 297.10 -5.00 -35.44 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -4.05 Total: 15.75 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -1.08 Total: 16.36 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.42 Total: -51.59 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: 0.25 Total: -34.70 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.44 -5.00 -35.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.243 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds