Wall clock time and date at job start Mon Mar 30 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86793 * 120.00241 * 2 1 4 4 H 1.48507 * 109.47393 * 239.99872 * 3 2 1 5 5 H 1.48493 * 109.47324 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47201 * 120.00006 * 3 2 1 7 7 C 1.39591 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.36119 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99790 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00527 * 359.97438 * 10 9 7 12 12 C 1.48837 * 120.00084 * 179.97438 * 10 9 7 13 13 O 1.21441 * 119.99610 * 353.19180 * 12 10 9 14 14 N 1.34771 * 120.00273 * 173.18898 * 12 10 9 15 15 C 1.46934 * 120.63109 * 351.26969 * 14 12 10 16 16 C 1.53194 * 108.77530 * 233.58487 * 15 14 12 17 17 C 1.53036 * 109.31117 * 305.36791 * 16 15 14 18 18 C 1.53035 * 109.54479 * 61.36703 * 17 16 15 19 19 H 1.08999 * 109.49774 * 58.58021 * 18 17 16 20 20 C 1.50693 * 109.50129 * 178.65357 * 18 17 16 21 21 N 1.34783 * 120.00077 * 180.02562 * 20 18 17 22 22 O 1.21284 * 119.99998 * 359.97438 * 20 18 17 23 23 C 1.46925 * 120.63162 * 171.24478 * 14 12 10 24 24 H 0.97002 * 119.99477 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99748 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.58369 * 113.79509 * 15 14 12 27 27 H 1.08995 * 109.58317 * 353.37369 * 15 14 12 28 28 H 1.08994 * 109.49290 * 185.41242 * 16 15 14 29 29 H 1.09004 * 109.49319 * 65.31703 * 16 15 14 30 30 H 1.09004 * 109.45577 * 181.39031 * 17 16 15 31 31 H 1.09009 * 109.45965 * 301.34184 * 17 16 15 32 32 H 0.96998 * 119.99933 * 359.97438 * 21 20 18 33 33 H 0.96995 * 119.99700 * 179.97438 * 21 20 18 34 34 H 1.09000 * 109.58758 * 6.63221 * 23 14 12 35 35 H 1.08997 * 109.58650 * 246.20366 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 3.0980 1.6963 -1.2125 5 1 1.2793 2.7464 0.0006 6 1 3.0980 1.6963 1.2125 7 6 2.0080 -1.2090 -0.0005 8 1 3.0880 -1.2090 -0.0001 9 7 1.3274 -2.3877 -0.0005 10 6 2.0012 -3.5549 -0.0005 11 8 3.2162 -3.5550 -0.0010 12 6 1.2570 -4.8439 0.0000 13 8 0.0491 -4.8475 0.1252 14 7 1.9236 -6.0070 -0.1384 15 6 3.3526 -6.0148 -0.4805 16 6 3.5594 -6.8990 -1.7143 17 6 2.9692 -8.2856 -1.4478 18 6 1.4660 -8.1612 -1.1894 19 1 0.9855 -7.6997 -2.0520 20 6 0.8801 -9.5304 -0.9598 21 7 -0.4377 -9.6666 -0.7115 22 8 1.5940 -10.5100 -0.9994 23 6 1.2355 -7.2913 0.0505 24 1 -0.4849 0.8401 -0.0004 25 1 0.3574 -2.3877 -0.0005 26 1 3.9263 -6.4143 0.3558 27 1 3.6813 -4.9989 -0.6996 28 1 4.6255 -6.9909 -1.9213 29 1 3.0591 -6.4493 -2.5720 30 1 3.1370 -8.9243 -2.3150 31 1 3.4527 -8.7244 -0.5749 32 1 -1.0088 -8.8832 -0.6802 33 1 -0.8149 -10.5480 -0.5641 34 1 0.1674 -7.1178 0.1815 35 1 1.6366 -7.7949 0.9300 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037242474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:32 Heat of formation + Delta-G solvation = -131.432052 kcal Electronic energy + Delta-G solvation = -20810.170770 eV Core-core repulsion = 17421.082853 eV Total energy + Delta-G solvation = -3389.087918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82863 -40.73145 -39.21520 -38.16015 -36.30352 -34.78431 -33.91184 -33.32398 -32.11913 -28.18849 -26.63026 -25.59990 -23.83131 -22.49669 -21.10864 -20.62755 -19.91585 -18.59774 -18.17408 -17.73129 -17.47961 -16.96344 -16.73576 -16.33024 -15.89638 -15.60758 -15.15933 -14.89572 -14.82355 -14.66151 -14.50083 -13.90419 -13.69588 -13.40914 -12.94862 -12.68748 -12.53907 -12.32621 -12.10817 -11.97455 -11.77302 -11.67460 -11.49202 -11.09313 -10.69029 -10.26614 -9.81119 -9.70630 -8.64401 -6.08460 0.58512 1.39820 1.46703 1.50948 1.56577 1.76103 2.28228 2.35416 2.56690 3.07420 3.16972 3.58981 3.75603 3.79769 3.97511 4.08392 4.22613 4.31108 4.49602 4.56540 4.71910 4.88005 4.98829 5.06950 5.20990 5.29366 5.37638 5.49758 5.70510 5.87241 6.13491 6.35460 6.36723 6.77771 6.97424 7.27006 7.29978 7.82575 8.50809 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040367 B = 0.004218 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.463068 B = 6636.473326 C = 7171.335835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.003 4.003 3 Si 1.008 2.992 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.343 4.343 8 H 0.102 0.898 9 N -0.508 5.508 10 C 0.389 3.611 11 O -0.596 6.596 12 C 0.519 3.481 13 O -0.564 6.564 14 N -0.581 5.581 15 C 0.065 3.935 16 C -0.125 4.125 17 C -0.096 4.096 18 C -0.117 4.117 19 H 0.110 0.890 20 C 0.531 3.469 21 N -0.836 5.836 22 O -0.580 6.580 23 C 0.118 3.882 24 H 0.289 0.711 25 H 0.400 0.600 26 H 0.071 0.929 27 H 0.127 0.873 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.415 0.585 33 H 0.410 0.590 34 H 0.099 0.901 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 -12.694 -2.512 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.120 0.880 9 N -0.141 5.141 10 C 0.175 3.825 11 O -0.487 6.487 12 C 0.305 3.695 13 O -0.444 6.444 14 N -0.313 5.313 15 C -0.056 4.056 16 C -0.163 4.163 17 C -0.134 4.134 18 C -0.139 4.139 19 H 0.128 0.872 20 C 0.315 3.685 21 N -0.400 5.400 22 O -0.459 6.459 23 C -0.004 4.004 24 H 0.099 0.901 25 H 0.235 0.765 26 H 0.089 0.911 27 H 0.144 0.856 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.242 0.758 34 H 0.117 0.883 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.706 -13.062 -2.497 13.317 hybrid contribution -0.832 0.665 0.187 1.082 sum -0.127 -12.397 -2.310 12.611 Atomic orbital electron populations 1.69543 1.07823 1.30850 1.45047 1.26501 0.96438 1.03410 0.94375 0.84776 0.77756 0.74928 0.79650 1.18750 1.19363 1.18963 1.19966 0.93797 0.82949 1.50594 0.88001 1.41668 1.10223 1.04761 1.57409 1.19516 0.87934 0.85068 0.90024 1.90291 1.13610 1.85763 1.59030 1.20102 0.86717 0.85779 0.76939 1.90657 1.14556 1.87780 1.51373 1.47815 1.11979 1.04099 1.67413 1.22938 0.78740 1.06090 0.97830 1.21926 1.02811 0.94373 0.97176 1.21332 0.92022 0.96914 1.03088 1.21674 0.99300 0.92527 1.00424 0.87194 1.20428 0.82843 0.90452 0.74737 1.43799 1.08634 1.14221 1.73335 1.90725 1.61006 1.41469 1.52744 1.21660 0.99619 0.82278 0.96844 0.90131 0.76516 0.91107 0.85567 0.88345 0.91943 0.90533 0.91290 0.75386 0.75789 0.88279 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.66 13.03 21.77 0.28 -46.37 16 2 C 0.00 -0.13 5.51 85.14 0.47 0.33 16 3 Si 1.01 39.39 29.56 68.60 2.03 41.42 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.34 -18.51 9.67 84.35 0.82 -17.69 16 8 H 0.10 5.59 7.15 -2.91 -0.02 5.57 16 9 N -0.51 -26.64 5.24 -308.87 -1.62 -28.26 16 10 C 0.39 18.91 7.67 87.08 0.67 19.58 16 11 O -0.60 -29.98 12.74 -3.72 -0.05 -30.02 16 12 C 0.52 21.62 7.71 87.08 0.67 22.29 16 13 O -0.56 -24.80 15.92 -3.53 -0.06 -24.85 16 14 N -0.58 -19.01 2.97 -821.16 -2.44 -21.45 16 15 C 0.06 1.97 5.97 86.36 0.52 2.49 16 16 C -0.12 -2.92 6.08 30.67 0.19 -2.73 16 17 C -0.10 -2.11 4.46 30.62 0.14 -1.97 16 18 C -0.12 -2.53 2.67 -11.46 -0.03 -2.56 16 19 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 20 C 0.53 11.37 7.43 87.65 0.65 12.02 16 21 N -0.84 -11.67 8.78 -173.53 -1.52 -13.20 16 22 O -0.58 -16.72 16.82 -3.04 -0.05 -16.77 16 23 C 0.12 2.96 5.59 86.37 0.48 3.45 16 24 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 25 H 0.40 21.32 7.37 -92.71 -0.68 20.64 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.13 4.76 4.32 -48.39 -0.21 4.55 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.63 8.07 -2.38 -0.02 1.62 16 31 H 0.07 1.57 8.13 -2.38 -0.02 1.55 16 32 H 0.42 4.34 8.38 -92.71 -0.78 3.56 16 33 H 0.41 4.55 8.93 -92.71 -0.83 3.73 16 34 H 0.10 2.43 6.61 -2.39 -0.02 2.41 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -65.85 297.10 -0.18 -66.03 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -1.32 Total: 38.26 kcal Atomic # 6 Polarization: 30.65 SS G_CDS: 4.57 Total: 35.21 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -5.30 Total: -109.28 kcal Atomic # 8 Polarization: -71.49 SS G_CDS: -0.15 Total: -71.65 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -65.85 -0.18 -66.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.399 kcal (2) G-P(sol) polarization free energy of solvation -65.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds