Wall clock time and date at job start Mon Mar 30 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86798 * 120.00112 * 2 1 4 4 H 1.48499 * 109.47207 * 270.00216 * 3 2 1 5 5 H 1.48501 * 109.46741 * 30.00269 * 3 2 1 6 6 H 1.48501 * 109.47261 * 149.99887 * 3 2 1 7 7 C 1.39587 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99791 * 359.72945 * 7 2 1 9 9 N 1.36111 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.34785 * 119.99728 * 179.72257 * 9 7 2 11 11 O 1.21493 * 120.00195 * 0.02562 * 10 9 7 12 12 C 1.48830 * 119.99535 * 180.02562 * 10 9 7 13 13 O 1.21439 * 120.00641 * 6.78780 * 12 10 9 14 14 N 1.34783 * 119.99836 * 186.77950 * 12 10 9 15 15 C 1.46925 * 120.62844 * 8.54314 * 14 12 10 16 16 C 1.53626 * 108.54273 * 126.36481 * 15 14 12 17 17 C 1.53042 * 109.24035 * 54.85829 * 16 15 14 18 18 C 1.50703 * 109.45950 * 178.49121 * 17 16 15 19 19 N 1.34777 * 119.99783 * 300.06294 * 18 17 16 20 20 O 1.21277 * 120.00075 * 120.06534 * 18 17 16 21 21 C 1.53043 * 109.53388 * 298.50807 * 17 16 15 22 22 C 1.46923 * 120.63216 * 188.82072 * 14 12 10 23 23 H 0.96998 * 119.99564 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00752 * 359.72826 * 9 7 2 25 25 H 1.09001 * 109.59006 * 246.19937 * 15 14 12 26 26 H 1.09006 * 109.58836 * 6.62713 * 15 14 12 27 27 H 1.08998 * 109.63555 * 294.86601 * 16 15 14 28 28 H 1.09003 * 109.45937 * 174.74327 * 16 15 14 29 29 H 1.08997 * 109.44934 * 58.52530 * 17 16 15 30 30 H 0.96994 * 119.99877 * 0.02562 * 19 18 17 31 31 H 0.96997 * 119.99491 * 179.97438 * 19 18 17 32 32 H 1.08995 * 109.50246 * 301.41124 * 21 17 16 33 33 H 1.09008 * 109.51960 * 181.33361 * 21 17 16 34 34 H 1.09000 * 109.58955 * 353.37690 * 22 14 12 35 35 H 1.09000 * 109.58488 * 113.65699 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7001 6 1 3.5418 1.4402 0.7001 7 6 2.0082 -1.2089 -0.0005 8 1 1.4681 -2.1442 0.0035 9 7 3.3693 -1.2088 -0.0011 10 6 4.0432 -2.3761 0.0041 11 8 3.4357 -3.4283 0.0087 12 6 5.5315 -2.3760 0.0041 13 8 6.1387 -1.3312 0.1238 14 7 6.2054 -3.5357 -0.1286 15 6 5.4970 -4.7795 -0.4600 16 6 6.1607 -5.4053 -1.6961 17 6 7.6565 -5.5867 -1.4279 18 6 8.3060 -6.2345 -2.6236 19 7 7.8978 -7.4512 -3.0354 20 8 9.1959 -5.6610 -3.2152 21 6 8.3003 -4.2215 -1.1752 22 6 7.6616 -3.5812 0.0613 23 1 -0.4849 0.8401 -0.0004 24 1 3.8544 -0.3688 -0.0051 25 1 5.5590 -5.4705 0.3807 26 1 4.4520 -4.5581 -0.6774 27 1 6.0221 -4.7512 -2.5569 28 1 5.7073 -6.3754 -1.8997 29 1 7.7939 -6.2208 -0.5521 30 1 7.1859 -7.9096 -2.5625 31 1 8.3156 -7.8679 -3.8053 32 1 8.1416 -3.5785 -2.0409 33 1 9.3699 -4.3486 -1.0077 34 1 8.0455 -2.5689 0.1880 35 1 7.8965 -4.1743 0.9451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:50 Heat of formation + Delta-G solvation = -99.748891 kcal Electronic energy + Delta-G solvation = -20794.791459 eV Core-core repulsion = 17407.077426 eV Total energy + Delta-G solvation = -3387.714033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47723 -39.56112 -37.69322 -36.75244 -34.49635 -33.94873 -32.55311 -31.90179 -30.93804 -26.83142 -25.53198 -23.50911 -22.66949 -21.18075 -20.04797 -19.38700 -18.47063 -17.61721 -16.83279 -16.54296 -16.24907 -15.32766 -15.14878 -14.99398 -14.54110 -14.23503 -13.85072 -13.69283 -13.50879 -13.10607 -13.03962 -12.56446 -12.43513 -12.04516 -11.83004 -11.35183 -11.17312 -10.95507 -10.77462 -10.71306 -10.38597 -10.14040 -9.97036 -9.89860 -9.78264 -8.52633 -8.41132 -8.09283 -6.65947 -4.07450 2.22788 2.47120 3.00830 3.04068 3.07535 3.14002 3.34683 3.90546 4.04977 4.43128 4.60309 4.70428 4.74185 5.05795 5.11225 5.15952 5.31212 5.45210 5.54429 5.65491 5.70555 5.81324 5.95654 6.09800 6.25895 6.43551 6.55534 6.82694 7.10455 7.20002 7.57346 7.83910 8.07331 8.17096 8.45141 8.67340 9.12041 9.54228 10.43535 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.004390 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.342387 B = 6376.494669 C = 6730.962139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.054 3.946 3 Si 0.875 3.125 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.309 4.309 8 H 0.129 0.871 9 N -0.520 5.520 10 C 0.401 3.599 11 O -0.570 6.570 12 C 0.516 3.484 13 O -0.550 6.550 14 N -0.593 5.593 15 C 0.071 3.929 16 C -0.125 4.125 17 C -0.110 4.110 18 C 0.523 3.477 19 N -0.857 5.857 20 O -0.545 6.545 21 C -0.112 4.112 22 C 0.108 3.892 23 H 0.282 0.718 24 H 0.384 0.616 25 H 0.062 0.938 26 H 0.160 0.840 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.402 0.598 31 H 0.399 0.601 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.405 -11.421 -2.060 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.155 4.155 3 Si 0.699 3.301 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.439 4.439 8 H 0.147 0.853 9 N -0.156 5.156 10 C 0.187 3.813 11 O -0.458 6.458 12 C 0.302 3.698 13 O -0.428 6.428 14 N -0.327 5.327 15 C -0.050 4.050 16 C -0.164 4.164 17 C -0.132 4.132 18 C 0.308 3.692 19 N -0.421 5.421 20 O -0.421 6.421 21 C -0.150 4.150 22 C -0.015 4.015 23 H 0.093 0.907 24 H 0.219 0.781 25 H 0.081 0.919 26 H 0.176 0.824 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.231 0.769 31 H 0.229 0.771 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.683 -10.874 -2.235 16.855 hybrid contribution 0.486 0.668 -0.081 0.831 sum 13.170 -10.205 -2.316 16.821 Atomic orbital electron populations 1.69441 1.06145 1.28807 1.43779 1.25250 0.95555 0.98675 0.95982 0.86691 0.80531 0.82989 0.79902 1.18809 1.19431 1.18312 1.19584 0.79068 0.97150 1.48091 0.85312 1.41866 1.07657 1.06984 1.59044 1.18799 0.86550 0.85110 0.90864 1.90275 1.68331 1.29339 1.57885 1.20553 0.89721 0.83094 0.76403 1.90669 1.70732 1.31154 1.50256 1.47811 1.06982 1.08783 1.69166 1.23046 1.02197 0.84554 0.95202 1.22084 0.92085 1.01846 1.00380 1.21419 0.97062 0.98284 0.96420 1.20777 0.82136 0.80878 0.85436 1.43908 1.42079 1.20490 1.35579 1.90735 1.30921 1.63192 1.57296 1.21717 0.99755 0.94467 0.99080 1.21633 0.80282 1.02782 0.96787 0.90662 0.78064 0.91933 0.82413 0.90980 0.90482 0.88279 0.76938 0.77080 0.90673 0.90209 0.88695 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.89 13.94 55.53 0.77 -22.11 16 2 C 0.05 1.41 5.51 -17.39 -0.10 1.32 16 3 Si 0.87 18.95 27.74 -169.99 -4.71 14.23 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.47 6.53 56.52 0.37 -5.10 16 7 C -0.31 -8.33 10.16 -15.15 -0.15 -8.49 16 8 H 0.13 3.83 7.37 -52.49 -0.39 3.44 16 9 N -0.52 -12.75 5.05 -11.59 -0.06 -12.81 16 10 C 0.40 9.32 7.67 -11.87 -0.09 9.23 16 11 O -0.57 -13.78 12.73 5.37 0.07 -13.71 16 12 C 0.52 10.60 7.71 -11.87 -0.09 10.51 16 13 O -0.55 -12.15 15.92 5.42 0.09 -12.06 16 14 N -0.59 -9.76 2.97 -173.24 -0.51 -10.27 16 15 C 0.07 1.02 6.00 -3.49 -0.02 1.00 16 16 C -0.13 -1.39 5.28 -26.38 -0.14 -1.53 16 17 C -0.11 -1.14 2.49 -91.73 -0.23 -1.36 16 18 C 0.52 5.79 7.43 -10.98 -0.08 5.70 16 19 N -0.86 -5.98 8.76 31.22 0.27 -5.71 16 20 O -0.54 -8.38 16.82 5.56 0.09 -8.28 16 21 C -0.11 -1.36 4.65 -26.61 -0.12 -1.48 16 22 C 0.11 1.44 6.44 -3.71 -0.02 1.42 16 23 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 24 H 0.38 8.96 5.24 -40.82 -0.21 8.74 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.16 2.80 4.31 -54.90 -0.24 2.56 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.63 7.52 -51.93 -0.39 0.24 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.40 1.72 8.22 -40.82 -0.34 1.38 16 31 H 0.40 2.40 8.93 -40.82 -0.36 2.04 16 32 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 33 H 0.08 0.90 8.07 -51.92 -0.42 0.48 16 34 H 0.09 1.39 7.01 -51.93 -0.36 1.02 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 293.67 15.07 4.43 4.43 Total: -1.00 -32.16 293.67 -4.61 -36.76 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -3.99 Total: 13.22 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: -1.05 Total: 16.32 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.47 Total: -50.90 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: 0.25 Total: -34.06 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.16 -4.61 -36.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.986 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds