Wall clock time and date at job start Mon Mar 30 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86798 * 120.00112 * 2 1 4 4 H 1.48499 * 109.47207 * 270.00216 * 3 2 1 5 5 H 1.48501 * 109.46741 * 30.00269 * 3 2 1 6 6 H 1.48501 * 109.47261 * 149.99887 * 3 2 1 7 7 C 1.39587 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99791 * 359.72945 * 7 2 1 9 9 N 1.36111 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.34785 * 119.99728 * 179.72257 * 9 7 2 11 11 O 1.21493 * 120.00195 * 0.02562 * 10 9 7 12 12 C 1.48830 * 119.99535 * 180.02562 * 10 9 7 13 13 O 1.21439 * 120.00641 * 6.78780 * 12 10 9 14 14 N 1.34783 * 119.99836 * 186.77950 * 12 10 9 15 15 C 1.46925 * 120.62844 * 8.54314 * 14 12 10 16 16 C 1.53626 * 108.54273 * 126.36481 * 15 14 12 17 17 C 1.53042 * 109.24035 * 54.85829 * 16 15 14 18 18 C 1.50703 * 109.45950 * 178.49121 * 17 16 15 19 19 N 1.34777 * 119.99783 * 300.06294 * 18 17 16 20 20 O 1.21277 * 120.00075 * 120.06534 * 18 17 16 21 21 C 1.53043 * 109.53388 * 298.50807 * 17 16 15 22 22 C 1.46923 * 120.63216 * 188.82072 * 14 12 10 23 23 H 0.96998 * 119.99564 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00752 * 359.72826 * 9 7 2 25 25 H 1.09001 * 109.59006 * 246.19937 * 15 14 12 26 26 H 1.09006 * 109.58836 * 6.62713 * 15 14 12 27 27 H 1.08998 * 109.63555 * 294.86601 * 16 15 14 28 28 H 1.09003 * 109.45937 * 174.74327 * 16 15 14 29 29 H 1.08997 * 109.44934 * 58.52530 * 17 16 15 30 30 H 0.96994 * 119.99877 * 0.02562 * 19 18 17 31 31 H 0.96997 * 119.99491 * 179.97438 * 19 18 17 32 32 H 1.08995 * 109.50246 * 301.41124 * 21 17 16 33 33 H 1.09008 * 109.51960 * 181.33361 * 21 17 16 34 34 H 1.09000 * 109.58955 * 353.37690 * 22 14 12 35 35 H 1.09000 * 109.58488 * 113.65699 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7001 6 1 3.5418 1.4402 0.7001 7 6 2.0082 -1.2089 -0.0005 8 1 1.4681 -2.1442 0.0035 9 7 3.3693 -1.2088 -0.0011 10 6 4.0432 -2.3761 0.0041 11 8 3.4357 -3.4283 0.0087 12 6 5.5315 -2.3760 0.0041 13 8 6.1387 -1.3312 0.1238 14 7 6.2054 -3.5357 -0.1286 15 6 5.4970 -4.7795 -0.4600 16 6 6.1607 -5.4053 -1.6961 17 6 7.6565 -5.5867 -1.4279 18 6 8.3060 -6.2345 -2.6236 19 7 7.8978 -7.4512 -3.0354 20 8 9.1959 -5.6610 -3.2152 21 6 8.3003 -4.2215 -1.1752 22 6 7.6616 -3.5812 0.0613 23 1 -0.4849 0.8401 -0.0004 24 1 3.8544 -0.3688 -0.0051 25 1 5.5590 -5.4705 0.3807 26 1 4.4520 -4.5581 -0.6774 27 1 6.0221 -4.7512 -2.5569 28 1 5.7073 -6.3754 -1.8997 29 1 7.7939 -6.2208 -0.5521 30 1 7.1859 -7.9096 -2.5625 31 1 8.3156 -7.8679 -3.8053 32 1 8.1416 -3.5785 -2.0409 33 1 9.3699 -4.3486 -1.0077 34 1 8.0455 -2.5689 0.1880 35 1 7.8965 -4.1743 0.9451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037243138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:49 Heat of formation + Delta-G solvation = -127.162763 kcal Electronic energy + Delta-G solvation = -20795.980214 eV Core-core repulsion = 17407.077426 eV Total energy + Delta-G solvation = -3388.902787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.83944 -40.76621 -39.34846 -38.15629 -36.35077 -34.82104 -34.06825 -33.52445 -32.01216 -28.41313 -27.05443 -24.79979 -23.96168 -22.39591 -21.43392 -20.91053 -19.99615 -18.49261 -18.25654 -17.75956 -17.62744 -17.00820 -16.77919 -16.04263 -15.95104 -15.41779 -15.14915 -15.12632 -14.83671 -14.73818 -14.42754 -14.30220 -13.79689 -13.28608 -13.08310 -12.92354 -12.55542 -12.37082 -12.22779 -11.99779 -11.80582 -11.70053 -11.58050 -10.96182 -10.62826 -10.47087 -9.84498 -9.73654 -8.62302 -6.14951 0.51015 1.29457 1.32282 1.38151 1.61938 1.66802 2.09799 2.25835 2.61082 2.89734 3.07541 3.60196 3.72392 3.79756 3.89384 4.07559 4.29851 4.35862 4.43994 4.71181 4.75244 4.81513 4.94092 5.09989 5.12120 5.26778 5.30227 5.51560 5.78301 5.92564 6.10930 6.30414 6.47801 6.60375 6.86079 7.15785 7.36669 7.63116 8.51708 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.004390 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.342387 B = 6376.494669 C = 6730.962139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.254 1.254 5 H -0.257 1.257 6 H -0.250 1.250 7 C -0.335 4.335 8 H 0.085 0.915 9 N -0.532 5.532 10 C 0.408 3.592 11 O -0.580 6.580 12 C 0.516 3.484 13 O -0.568 6.568 14 N -0.582 5.582 15 C 0.067 3.933 16 C -0.116 4.116 17 C -0.103 4.103 18 C 0.522 3.478 19 N -0.835 5.835 20 O -0.594 6.594 21 C -0.107 4.107 22 C 0.107 3.893 23 H 0.290 0.710 24 H 0.391 0.609 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.048 0.952 28 H 0.114 0.886 29 H 0.136 0.864 30 H 0.419 0.581 31 H 0.407 0.593 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.540 -12.713 -1.734 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.191 4.191 3 Si 0.762 3.238 4 H -0.178 1.178 5 H -0.181 1.181 6 H -0.175 1.175 7 C -0.465 4.465 8 H 0.103 0.897 9 N -0.169 5.169 10 C 0.193 3.807 11 O -0.468 6.468 12 C 0.300 3.700 13 O -0.448 6.448 14 N -0.314 5.314 15 C -0.053 4.053 16 C -0.154 4.154 17 C -0.124 4.124 18 C 0.307 3.693 19 N -0.399 5.399 20 O -0.475 6.475 21 C -0.145 4.145 22 C -0.014 4.014 23 H 0.100 0.900 24 H 0.227 0.773 25 H 0.110 0.890 26 H 0.142 0.858 27 H 0.067 0.933 28 H 0.132 0.868 29 H 0.153 0.847 30 H 0.250 0.750 31 H 0.238 0.762 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.791 -12.263 -1.913 19.308 hybrid contribution -0.100 0.784 -0.202 0.816 sum 14.690 -11.478 -2.115 18.762 Atomic orbital electron populations 1.69538 1.07745 1.30278 1.45138 1.26004 0.96297 1.01978 0.94862 0.85669 0.79422 0.78164 0.80501 1.17779 1.18113 1.17466 1.19198 0.80226 0.96166 1.50892 0.89737 1.41771 1.06758 1.07689 1.60727 1.19558 0.88195 0.84604 0.88331 1.90321 1.69609 1.29838 1.57021 1.20010 0.88263 0.84329 0.77350 1.90663 1.70450 1.32027 1.51652 1.47979 1.08508 1.08104 1.66831 1.23027 1.00411 0.84099 0.97807 1.21999 0.92859 1.02901 0.97644 1.21382 0.95658 0.97723 0.97656 1.20843 0.81601 0.81599 0.85214 1.43737 1.41695 1.19119 1.35348 1.90729 1.33318 1.64700 1.58760 1.21637 1.00643 0.95067 0.97183 1.21892 0.77680 1.03035 0.98803 0.89962 0.77340 0.88992 0.85836 0.93273 0.86774 0.84679 0.74976 0.76210 0.93508 0.88886 0.90027 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.72 13.94 21.77 0.30 -49.42 16 2 C 0.01 0.74 5.51 85.14 0.47 1.21 16 3 Si 0.94 39.19 27.74 68.60 1.90 41.09 16 4 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.25 -10.00 6.53 99.48 0.65 -9.35 16 7 C -0.34 -18.87 10.16 84.36 0.86 -18.01 16 8 H 0.08 5.38 7.37 -2.91 -0.02 5.36 16 9 N -0.53 -26.66 5.05 -308.87 -1.56 -28.22 16 10 C 0.41 19.24 7.67 87.08 0.67 19.91 16 11 O -0.58 -28.66 12.73 -3.69 -0.05 -28.71 16 12 C 0.52 20.91 7.71 87.08 0.67 21.59 16 13 O -0.57 -24.73 15.92 -3.52 -0.06 -24.78 16 14 N -0.58 -18.07 2.97 -820.33 -2.43 -20.50 16 15 C 0.07 1.76 6.00 86.51 0.52 2.28 16 16 C -0.12 -2.21 5.28 30.82 0.16 -2.05 16 17 C -0.10 -1.74 2.49 -11.51 -0.03 -1.77 16 18 C 0.52 10.03 7.43 87.66 0.65 10.68 16 19 N -0.84 -8.62 8.76 -173.53 -1.52 -10.14 16 20 O -0.59 -17.36 16.82 -3.02 -0.05 -17.42 16 21 C -0.11 -2.34 4.65 30.67 0.14 -2.20 16 22 C 0.11 2.57 6.44 86.36 0.56 3.13 16 23 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 24 H 0.39 18.28 5.24 -92.71 -0.49 17.79 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.12 4.28 4.31 -49.56 -0.21 4.07 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.37 7.52 -2.39 -0.02 1.35 16 29 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.42 1.65 8.22 -92.71 -0.76 0.89 16 31 H 0.41 3.61 8.93 -92.71 -0.83 2.78 16 32 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 33 H 0.09 1.85 8.07 -2.38 -0.02 1.83 16 34 H 0.08 2.24 7.01 -2.39 -0.02 2.22 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -73.79 293.67 0.04 -73.75 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -1.17 Total: 29.58 kcal Atomic # 6 Polarization: 30.10 SS G_CDS: 4.67 Total: 34.77 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -5.21 Total: -108.28 kcal Atomic # 8 Polarization: -70.76 SS G_CDS: -0.15 Total: -70.91 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.09 kcal Total: -73.79 0.04 -73.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.416 kcal (2) G-P(sol) polarization free energy of solvation -73.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds