Wall clock time and date at job start Mon Mar 30 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.50702 * 109.46904 * 269.99929 * 3 2 1 5 5 H 1.07993 * 120.00490 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47522 * 89.99831 * 8 6 4 10 10 H 1.48508 * 109.46941 * 209.99577 * 8 6 4 11 11 H 1.48502 * 109.47592 * 329.99302 * 8 6 4 12 12 C 1.34779 * 119.99707 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99922 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00037 * 359.97438 * 12 2 1 15 15 S 1.81399 * 109.47054 * 180.02562 * 14 12 2 16 16 C 1.76197 * 103.00045 * 180.02562 * 15 14 12 17 17 C 1.40258 * 126.07769 * 0.02562 * 16 15 14 18 18 N 1.30844 * 108.36581 * 179.97438 * 17 16 15 19 19 N 1.40077 * 108.37546 * 0.02562 * 18 17 16 20 20 C 1.46492 * 126.06364 * 180.02562 * 19 18 17 21 21 C 1.35758 * 126.07431 * 179.71602 * 16 15 14 22 22 H 1.09002 * 109.47085 * 270.00430 * 1 2 3 23 23 H 1.09002 * 109.46740 * 30.00103 * 1 2 3 24 24 H 1.09001 * 109.47266 * 149.99827 * 1 2 3 25 25 H 1.08991 * 109.47410 * 30.00046 * 3 2 1 26 26 H 1.09007 * 109.47039 * 150.00320 * 3 2 1 27 27 H 0.97004 * 119.99848 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47247 * 60.00371 * 14 12 2 29 29 H 1.09001 * 109.47358 * 299.99798 * 14 12 2 30 30 H 1.08000 * 125.81176 * 0.02562 * 17 16 15 31 31 H 1.08997 * 109.47255 * 90.02162 * 20 19 18 32 32 H 1.09005 * 109.47213 * 210.02003 * 20 19 18 33 33 H 1.08997 * 109.47378 * 330.02049 * 20 19 18 34 34 H 1.08002 * 126.22967 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4377 3.4169 -3.4339 9 1 2.3079 4.2605 -3.8999 10 1 4.6984 4.1993 -3.4968 11 1 3.5540 2.2200 -4.3052 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 16 2.5640 -3.8511 -0.0005 16 6 1.5166 -5.2680 -0.0013 17 6 0.1141 -5.2583 -0.0023 18 7 -0.3067 -6.4973 -0.0032 19 7 0.8100 -7.3429 -0.0022 20 6 0.7825 -8.8076 -0.0032 21 6 1.9238 -6.5631 -0.0070 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6086 2.0283 0.5138 26 1 3.1500 1.1383 0.5138 27 1 4.0312 4.4434 -0.8505 28 1 0.7583 -2.5299 -0.8903 29 1 0.7590 -2.5303 0.8897 30 1 -0.5118 -4.3782 -0.0031 31 1 0.7776 -9.1702 -1.0311 32 1 1.6647 -9.1879 0.5119 33 1 -0.1149 -9.1546 0.5088 34 1 2.9463 -6.9107 -0.0114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042406109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:37 Heat of formation + Delta-G solvation = 52.319308 kcal Electronic energy + Delta-G solvation = -17505.647511 eV Core-core repulsion = 14567.280521 eV Total energy + Delta-G solvation = -2938.366990 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12199 -38.91767 -34.87686 -33.48901 -32.66921 -30.32790 -30.11071 -27.53344 -26.94207 -25.67279 -22.81290 -21.54857 -21.25013 -18.68858 -17.73870 -16.59220 -16.36855 -15.97943 -15.68542 -15.20300 -15.03209 -14.57588 -14.07840 -13.45937 -13.36040 -13.29998 -12.99851 -12.73859 -12.38585 -12.20155 -11.94721 -11.87204 -11.36066 -11.19036 -10.89357 -10.58423 -10.16165 -9.86797 -9.77601 -9.64416 -9.59768 -9.08291 -8.43873 -7.71367 -7.01442 -6.04795 -4.09698 1.54450 1.61704 2.28488 2.49670 2.80551 3.28417 3.31152 3.37972 3.43327 3.91392 4.32844 4.44969 4.63469 4.81393 4.86497 4.99589 5.06487 5.17136 5.29807 5.33337 5.38251 5.57349 5.63564 5.88288 6.16661 6.22394 6.72365 6.98705 7.39537 7.41016 7.48167 7.91041 8.21383 8.30800 8.85233 9.00384 9.55406 11.03390 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.038987 B = 0.003585 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.023120 B = 7807.616997 C = 7949.904311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.522 3.478 13 O -0.523 6.523 14 C -0.142 4.142 15 S -0.011 6.011 16 C -0.252 4.252 17 C 0.049 3.951 18 N -0.285 5.285 19 N -0.377 5.377 20 C 0.104 3.896 21 C 0.076 3.924 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.183 0.817 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 -20.507 2.520 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.329 5.329 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.306 3.694 13 O -0.400 6.400 14 C -0.293 4.293 15 S 0.224 5.776 16 C -0.374 4.374 17 C -0.141 4.141 18 N -0.106 5.106 19 N -0.162 5.162 20 C -0.037 4.037 21 C -0.075 4.075 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.199 0.801 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.048 -21.114 2.572 22.408 hybrid contribution -0.747 0.814 -1.016 1.500 sum -7.795 -20.301 1.556 21.801 Atomic orbital electron populations 1.21691 0.81270 1.02744 1.00620 1.48084 1.06267 1.07408 1.71175 1.19346 0.92628 0.77668 0.97669 1.21427 1.36650 1.06367 0.92230 0.92385 1.24936 0.95277 0.96372 0.97501 1.69931 1.38326 1.14325 1.30771 0.86484 0.77676 0.78616 0.84590 1.20656 1.21055 1.19814 1.19331 0.87783 0.83956 0.78355 1.90718 1.13253 1.86465 1.49517 1.23810 1.02464 0.96412 1.06638 1.85914 1.06597 0.91172 1.93895 1.22294 0.97170 0.98664 1.19283 1.23824 0.93154 0.95785 1.01302 1.77233 1.09135 1.00811 1.23466 1.48749 1.03405 1.06507 1.57553 1.21846 1.04533 0.73967 1.03381 1.22220 0.93082 0.89325 1.02921 0.93472 0.90460 0.92506 0.94753 0.93627 0.92671 0.87392 0.87532 0.80056 0.90751 0.89361 0.89312 0.80261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.24 59.85 0.61 1.84 16 2 N -0.60 -12.46 2.86 -182.95 -0.52 -12.98 16 3 C 0.25 6.39 5.16 -5.19 -0.03 6.37 16 4 C -0.53 -14.94 9.39 -34.44 -0.32 -15.27 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.52 10.78 7.69 -10.99 -0.08 10.70 16 13 O -0.52 -13.19 15.44 5.56 0.09 -13.10 16 14 C -0.14 -2.11 3.87 36.01 0.14 -1.97 16 15 S -0.01 -0.17 21.25 -107.50 -2.28 -2.46 16 16 C -0.25 -3.26 6.32 -39.71 -0.25 -3.51 16 17 C 0.05 0.61 11.30 -17.21 -0.19 0.41 16 18 N -0.28 -3.64 12.57 30.71 0.39 -3.25 16 19 N -0.38 -3.96 4.04 -67.78 -0.27 -4.24 16 20 C 0.10 0.59 11.48 59.84 0.69 1.27 16 21 C 0.08 0.83 11.51 -16.61 -0.19 0.64 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 24 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 25 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 26 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.11 1.39 7.40 -51.92 -0.38 1.01 16 29 H 0.11 1.30 8.11 -51.92 -0.42 0.88 16 30 H 0.18 1.80 7.51 -52.49 -0.39 1.41 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -35.66 312.50 -6.33 -41.99 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.42 Total: -3.83 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 0.27 Total: 2.14 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.33 Total: -46.31 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.28 Total: -2.46 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.66 -6.33 -41.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042406109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.306 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds