Wall clock time and date at job start Mon Mar 30 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.50702 * 109.46904 * 269.99929 * 3 2 1 5 5 H 1.07993 * 120.00490 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47522 * 89.99831 * 8 6 4 10 10 H 1.48508 * 109.46941 * 209.99577 * 8 6 4 11 11 H 1.48502 * 109.47592 * 329.99302 * 8 6 4 12 12 C 1.34779 * 119.99707 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99922 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00037 * 359.97438 * 12 2 1 15 15 S 1.81399 * 109.47054 * 180.02562 * 14 12 2 16 16 C 1.76197 * 103.00045 * 180.02562 * 15 14 12 17 17 C 1.40258 * 126.07769 * 0.02562 * 16 15 14 18 18 N 1.30844 * 108.36581 * 179.97438 * 17 16 15 19 19 N 1.40077 * 108.37546 * 0.02562 * 18 17 16 20 20 C 1.46492 * 126.06364 * 180.02562 * 19 18 17 21 21 C 1.35758 * 126.07431 * 179.71602 * 16 15 14 22 22 H 1.09002 * 109.47085 * 270.00430 * 1 2 3 23 23 H 1.09002 * 109.46740 * 30.00103 * 1 2 3 24 24 H 1.09001 * 109.47266 * 149.99827 * 1 2 3 25 25 H 1.08991 * 109.47410 * 30.00046 * 3 2 1 26 26 H 1.09007 * 109.47039 * 150.00320 * 3 2 1 27 27 H 0.97004 * 119.99848 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47247 * 60.00371 * 14 12 2 29 29 H 1.09001 * 109.47358 * 299.99798 * 14 12 2 30 30 H 1.08000 * 125.81176 * 0.02562 * 17 16 15 31 31 H 1.08997 * 109.47255 * 90.02162 * 20 19 18 32 32 H 1.09005 * 109.47213 * 210.02003 * 20 19 18 33 33 H 1.08997 * 109.47378 * 330.02049 * 20 19 18 34 34 H 1.08002 * 126.22967 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4377 3.4169 -3.4339 9 1 2.3079 4.2605 -3.8999 10 1 4.6984 4.1993 -3.4968 11 1 3.5540 2.2200 -4.3052 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 16 2.5640 -3.8511 -0.0005 16 6 1.5166 -5.2680 -0.0013 17 6 0.1141 -5.2583 -0.0023 18 7 -0.3067 -6.4973 -0.0032 19 7 0.8100 -7.3429 -0.0022 20 6 0.7825 -8.8076 -0.0032 21 6 1.9238 -6.5631 -0.0070 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6086 2.0283 0.5138 26 1 3.1500 1.1383 0.5138 27 1 4.0312 4.4434 -0.8505 28 1 0.7583 -2.5299 -0.8903 29 1 0.7590 -2.5303 0.8897 30 1 -0.5118 -4.3782 -0.0031 31 1 0.7776 -9.1702 -1.0311 32 1 1.6647 -9.1879 0.5119 33 1 -0.1149 -9.1546 0.5088 34 1 2.9463 -6.9107 -0.0114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042406109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:37 Heat of formation + Delta-G solvation = 27.718757 kcal Electronic energy + Delta-G solvation = -17506.714271 eV Core-core repulsion = 14567.280521 eV Total energy + Delta-G solvation = -2939.433750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.95228 -40.57465 -36.62729 -34.76334 -34.18038 -31.62073 -31.18187 -29.22177 -27.67462 -27.22418 -24.77411 -22.43903 -22.08612 -20.21480 -18.71962 -18.66857 -17.89508 -17.24738 -16.68273 -16.67198 -16.33922 -15.97792 -15.28817 -14.69927 -14.54765 -14.22914 -14.02666 -13.86870 -13.70170 -13.47081 -13.41182 -13.22557 -13.04367 -12.79451 -12.51755 -12.22370 -12.19724 -11.70467 -10.93582 -10.77059 -10.71609 -10.63028 -10.38267 -9.45471 -8.22032 -8.09662 -6.36448 0.44872 0.79902 1.37803 1.41033 1.43458 1.51287 1.60404 1.72951 1.89332 2.31798 2.45775 3.08182 3.61604 3.69963 3.90523 4.05850 4.19420 4.26910 4.45920 4.47102 4.63458 4.71629 4.73938 4.75048 4.96914 5.01337 5.23536 5.38430 5.55201 5.81659 6.01160 6.05935 6.55826 6.65148 6.74404 7.25871 7.40742 8.85419 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.038987 B = 0.003585 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.023120 B = 7807.616997 C = 7949.904311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.604 5.604 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.512 3.488 13 O -0.581 6.581 14 C -0.120 4.120 15 S -0.060 6.060 16 C -0.268 4.268 17 C 0.044 3.956 18 N -0.312 5.312 19 N -0.375 5.375 20 C 0.093 3.907 21 C 0.085 3.915 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.028 0.972 26 H 0.000 1.000 27 H 0.267 0.733 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.201 0.799 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 -22.269 1.633 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.299 3.701 13 O -0.461 6.461 14 C -0.271 4.271 15 S 0.175 5.825 16 C -0.391 4.391 17 C -0.145 4.145 18 N -0.134 5.134 19 N -0.159 5.159 20 C -0.046 4.046 21 C -0.068 4.068 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.114 0.886 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.158 0.842 30 H 0.217 0.783 31 H 0.106 0.894 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.724 -22.921 1.690 24.583 hybrid contribution -0.256 1.241 -0.688 1.442 sum -8.980 -21.680 1.002 23.487 Atomic orbital electron populations 1.22030 0.77481 1.04343 1.02979 1.48078 1.08598 1.05907 1.70923 1.18804 0.91227 0.80056 0.96123 1.21710 1.36870 1.06585 0.93047 0.92751 1.25856 0.94878 0.96453 1.01961 1.70049 1.38941 1.14808 1.33040 0.85413 0.78067 0.78213 0.79112 1.18760 1.20693 1.19767 1.20250 0.87506 0.85580 0.76804 1.90686 1.16038 1.87544 1.51861 1.23615 1.01635 0.92421 1.09415 1.86094 1.08585 0.93160 1.94687 1.22142 0.97075 0.98033 1.21868 1.24151 0.93078 0.96416 1.00831 1.77193 1.10445 1.01261 1.24532 1.49149 1.02681 1.07965 1.56118 1.22252 1.06229 0.71350 1.04808 1.22689 0.94336 0.88974 1.00800 0.90678 0.91247 0.88561 0.95408 0.98232 0.92377 0.84748 0.84216 0.78257 0.89420 0.86612 0.88749 0.77714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.05 10.24 127.77 1.31 3.36 16 2 N -0.60 -25.13 2.86 -851.12 -2.43 -27.56 16 3 C 0.26 13.96 5.16 85.63 0.44 14.40 16 4 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.43 5.46 84.66 0.46 0.90 16 7 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 8 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 C 0.51 21.16 7.69 87.66 0.67 21.84 16 13 O -0.58 -30.41 15.44 -3.04 -0.05 -30.46 16 14 C -0.12 -3.34 3.87 71.24 0.28 -3.06 16 15 S -0.06 -1.80 21.25 -56.49 -1.20 -3.00 16 16 C -0.27 -6.45 6.32 22.19 0.14 -6.31 16 17 C 0.04 0.99 11.30 85.33 0.96 1.96 16 18 N -0.31 -7.29 12.57 -56.76 -0.71 -8.00 16 19 N -0.37 -6.92 4.04 -368.36 -1.49 -8.41 16 20 C 0.09 0.77 11.48 127.77 1.47 2.24 16 21 C 0.08 1.65 11.51 83.48 0.96 2.61 16 22 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 24 H 0.10 1.92 6.44 -2.39 -0.02 1.91 16 25 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 26 H 0.00 -0.03 7.42 -2.38 -0.02 -0.05 16 27 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.13 3.03 7.40 -2.39 -0.02 3.01 16 29 H 0.14 2.95 8.11 -2.39 -0.02 2.93 16 30 H 0.20 3.35 7.51 -2.91 -0.02 3.33 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -80.82 312.50 4.46 -76.36 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.10 Total: 3.26 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 6.94 Total: 6.81 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -4.35 Total: -100.08 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.46 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -1.20 Total: -3.00 kcal Total: -80.82 4.46 -76.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042406109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.077 kcal (2) G-P(sol) polarization free energy of solvation -80.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds