Wall clock time and date at job start Mon Mar 30 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31006 * 1 3 3 Si 1.86794 * 120.00381 * 2 1 4 4 H 1.48499 * 109.47399 * 240.00169 * 3 2 1 5 5 H 1.48502 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47571 * 119.99494 * 3 2 1 7 7 C 1.39586 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.36120 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00438 * 179.97438 * 9 7 2 11 11 O 1.21499 * 119.99513 * 0.02562 * 10 9 7 12 12 C 1.48823 * 119.99994 * 180.02562 * 10 9 7 13 13 O 1.21438 * 120.00394 * 6.61684 * 12 10 9 14 14 N 1.34778 * 119.99930 * 186.62280 * 12 10 9 15 15 C 1.46933 * 120.63090 * 7.19824 * 14 12 10 16 16 C 1.53191 * 108.89264 * 126.46310 * 15 14 12 17 17 C 1.53040 * 109.31286 * 54.56750 * 16 15 14 18 18 C 1.53045 * 109.53541 * 298.63148 * 17 16 15 19 19 C 1.46959 * 120.65500 * 187.01512 * 14 12 10 20 20 H 1.08998 * 109.58585 * 113.67852 * 19 14 12 21 21 C 1.50700 * 109.59596 * 353.39160 * 19 14 12 22 22 N 1.34779 * 120.00062 * 121.63233 * 21 19 14 23 23 O 1.21277 * 120.00412 * 301.63928 * 21 19 14 24 24 H 0.96997 * 120.00046 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99909 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.58325 * 6.60633 * 15 14 12 27 27 H 1.09003 * 109.58385 * 246.32476 * 15 14 12 28 28 H 1.09001 * 109.49491 * 174.51195 * 16 15 14 29 29 H 1.08997 * 109.49954 * 294.58046 * 16 15 14 30 30 H 1.09000 * 109.46419 * 58.65168 * 17 16 15 31 31 H 1.08997 * 109.46087 * 178.61314 * 17 16 15 32 32 H 1.09003 * 109.49400 * 181.31855 * 18 17 16 33 33 H 1.08998 * 109.49633 * 301.41106 * 18 17 16 34 34 H 0.97008 * 119.99732 * 0.02562 * 22 21 19 35 35 H 0.96995 * 120.00613 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6176 0.0000 4 1 3.0979 1.6963 -1.2125 5 1 1.2792 2.7464 -0.0006 6 1 3.0978 1.6964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3877 0.0005 10 6 2.0012 -3.5550 0.0005 11 8 3.2162 -3.5549 0.0010 12 6 1.2571 -4.8438 0.0000 13 8 0.0488 -4.8473 -0.1217 14 7 1.9242 -6.0071 0.1346 15 6 3.3614 -6.0150 0.4396 16 6 3.6012 -6.8858 1.6769 17 6 3.0009 -8.2740 1.4428 18 6 1.4912 -8.1488 1.2255 19 6 1.2275 -7.2922 -0.0169 20 1 1.6001 -7.8078 -0.9019 21 6 -0.2532 -7.0507 -0.1589 22 7 -0.9050 -7.4862 -1.2553 23 8 -0.8585 -6.4644 0.7133 24 1 -0.4850 0.8400 -0.0004 25 1 0.3574 -2.3878 -0.0002 26 1 3.6984 -4.9976 0.6380 27 1 3.9125 -6.4238 -0.4074 28 1 4.6726 -6.9781 1.8547 29 1 3.1269 -6.4252 2.5435 30 1 3.4585 -8.7237 0.5617 31 1 3.1917 -8.9034 2.3120 32 1 1.0608 -9.1399 1.0822 33 1 1.0363 -7.6766 2.0963 34 1 -0.4209 -7.9554 -1.9529 35 1 -1.8581 -7.3311 -1.3467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042406423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:04 Heat of formation + Delta-G solvation = -83.909067 kcal Electronic energy + Delta-G solvation = -21528.426661 eV Core-core repulsion = 18141.399495 eV Total energy + Delta-G solvation = -3387.027166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61321 -38.57140 -37.21337 -36.71593 -34.39086 -33.27616 -32.46436 -31.41410 -30.97157 -26.43773 -25.22132 -23.67572 -22.77816 -20.58648 -20.31361 -18.87326 -18.11359 -17.06151 -16.70518 -16.16578 -15.80111 -15.10514 -14.92346 -14.67344 -14.33629 -13.97876 -13.94359 -13.58537 -13.09928 -13.06758 -12.96042 -12.36549 -12.08877 -11.76361 -11.36482 -11.21321 -10.97643 -10.82471 -10.68680 -10.51819 -10.41527 -9.96745 -9.69003 -9.34461 -9.08008 -8.28288 -8.22813 -7.77310 -6.68561 -4.01569 2.43121 2.83635 3.15445 3.16624 3.19478 3.53375 3.71054 4.03972 4.27888 4.74202 4.88856 4.95926 5.01009 5.15251 5.17446 5.28534 5.30867 5.65553 5.78679 5.85789 5.95582 5.97007 6.06758 6.15802 6.46566 6.61730 6.97194 7.11260 7.29575 7.61158 7.67017 7.80171 8.32940 8.57218 8.79458 8.95501 9.30197 9.83278 10.45675 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.005666 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.147875 B = 4940.513787 C = 5737.853514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.032 3.968 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.114 0.886 9 N -0.491 5.491 10 C 0.394 3.606 11 O -0.587 6.587 12 C 0.505 3.495 13 O -0.511 6.511 14 N -0.585 5.585 15 C 0.069 3.931 16 C -0.137 4.137 17 C -0.117 4.117 18 C -0.120 4.120 19 C 0.126 3.874 20 H 0.081 0.919 21 C 0.527 3.473 22 N -0.860 5.860 23 O -0.503 6.503 24 H 0.282 0.718 25 H 0.406 0.594 26 H 0.162 0.838 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.393 0.607 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 -14.879 -1.257 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.131 0.869 9 N -0.124 5.124 10 C 0.179 3.821 11 O -0.478 6.478 12 C 0.291 3.709 13 O -0.386 6.386 14 N -0.322 5.322 15 C -0.052 4.052 16 C -0.176 4.176 17 C -0.155 4.155 18 C -0.159 4.159 19 C 0.019 3.981 20 H 0.099 0.901 21 C 0.311 3.689 22 N -0.425 5.425 23 O -0.375 6.375 24 H 0.092 0.908 25 H 0.241 0.759 26 H 0.178 0.822 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.220 0.780 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.962 -14.276 -0.630 14.594 hybrid contribution -0.352 0.389 -0.529 0.745 sum 2.610 -13.887 -1.159 14.178 Atomic orbital electron populations 1.69482 1.06581 1.29581 1.44645 1.25619 0.95620 1.00573 0.95726 0.85760 0.78867 0.79228 0.79524 1.19345 1.20584 1.19306 1.19859 0.93992 0.81837 1.48152 0.86858 1.41566 1.10575 1.04175 1.56060 1.18874 0.87682 0.84220 0.91297 1.90193 1.13073 1.84820 1.59738 1.20713 0.87496 0.85626 0.77067 1.90893 1.13341 1.86413 1.47906 1.47688 1.10408 1.02840 1.71294 1.23078 0.78724 1.07661 0.95737 1.21987 1.00881 0.95229 0.99465 1.21529 0.94528 0.97752 1.01677 1.21815 0.97523 0.98955 0.97609 1.21115 0.90803 0.86784 0.99411 0.90107 1.19892 0.88914 0.77525 0.82568 1.43731 1.13230 1.62973 1.22614 1.90756 1.68580 1.36784 1.41361 0.90771 0.75883 0.82208 0.92549 0.90834 0.91587 0.91863 0.91676 0.90950 0.90313 0.77978 0.76996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.43 13.03 55.53 0.72 -22.71 16 2 C 0.03 0.84 5.51 -17.40 -0.10 0.74 16 3 Si 0.94 20.02 29.56 -169.99 -5.02 14.99 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.31 -8.44 9.67 -15.15 -0.15 -8.59 16 8 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 9 N -0.49 -13.30 5.24 -11.59 -0.06 -13.36 16 10 C 0.39 9.99 7.68 -11.88 -0.09 9.90 16 11 O -0.59 -15.06 12.69 5.37 0.07 -14.99 16 12 C 0.50 11.59 7.57 -11.88 -0.09 11.50 16 13 O -0.51 -12.71 11.60 -20.14 -0.23 -12.94 16 14 N -0.59 -10.78 2.98 -167.25 -0.50 -11.28 16 15 C 0.07 1.12 6.01 -3.71 -0.02 1.10 16 16 C -0.14 -1.79 6.08 -26.61 -0.16 -1.96 16 17 C -0.12 -1.27 5.88 -26.69 -0.16 -1.43 16 18 C -0.12 -1.52 5.33 -26.61 -0.14 -1.66 16 19 C 0.13 1.88 3.31 -68.73 -0.23 1.66 16 20 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 21 C 0.53 9.04 5.07 -10.98 -0.06 8.98 16 22 N -0.86 -10.75 8.87 31.22 0.28 -10.48 16 23 O -0.50 -11.19 14.76 -20.00 -0.30 -11.49 16 24 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 25 H 0.41 11.29 7.37 -40.82 -0.30 10.99 16 26 H 0.16 3.17 4.21 -55.39 -0.23 2.94 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.19 7.99 -51.93 -0.41 0.78 16 34 H 0.39 3.45 8.67 -40.82 -0.35 3.09 16 35 H 0.40 4.75 8.93 -40.82 -0.36 4.38 16 LS Contribution 291.57 15.07 4.39 4.39 Total: -1.00 -33.31 291.57 -5.96 -39.27 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -4.12 Total: 18.33 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: -1.19 Total: 20.26 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.44 Total: -57.82 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.46 Total: -39.42 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.31 -5.96 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042406423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.639 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds