Wall clock time and date at job start Mon Mar 30 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31006 * 1 3 3 Si 1.86794 * 120.00381 * 2 1 4 4 H 1.48499 * 109.47399 * 240.00169 * 3 2 1 5 5 H 1.48502 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47571 * 119.99494 * 3 2 1 7 7 C 1.39586 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.36120 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00438 * 179.97438 * 9 7 2 11 11 O 1.21499 * 119.99513 * 0.02562 * 10 9 7 12 12 C 1.48823 * 119.99994 * 180.02562 * 10 9 7 13 13 O 1.21438 * 120.00394 * 6.61684 * 12 10 9 14 14 N 1.34778 * 119.99930 * 186.62280 * 12 10 9 15 15 C 1.46933 * 120.63090 * 7.19824 * 14 12 10 16 16 C 1.53191 * 108.89264 * 126.46310 * 15 14 12 17 17 C 1.53040 * 109.31286 * 54.56750 * 16 15 14 18 18 C 1.53045 * 109.53541 * 298.63148 * 17 16 15 19 19 C 1.46959 * 120.65500 * 187.01512 * 14 12 10 20 20 H 1.08998 * 109.58585 * 113.67852 * 19 14 12 21 21 C 1.50700 * 109.59596 * 353.39160 * 19 14 12 22 22 N 1.34779 * 120.00062 * 121.63233 * 21 19 14 23 23 O 1.21277 * 120.00412 * 301.63928 * 21 19 14 24 24 H 0.96997 * 120.00046 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99909 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.58325 * 6.60633 * 15 14 12 27 27 H 1.09003 * 109.58385 * 246.32476 * 15 14 12 28 28 H 1.09001 * 109.49491 * 174.51195 * 16 15 14 29 29 H 1.08997 * 109.49954 * 294.58046 * 16 15 14 30 30 H 1.09000 * 109.46419 * 58.65168 * 17 16 15 31 31 H 1.08997 * 109.46087 * 178.61314 * 17 16 15 32 32 H 1.09003 * 109.49400 * 181.31855 * 18 17 16 33 33 H 1.08998 * 109.49633 * 301.41106 * 18 17 16 34 34 H 0.97008 * 119.99732 * 0.02562 * 22 21 19 35 35 H 0.96995 * 120.00613 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6176 0.0000 4 1 3.0979 1.6963 -1.2125 5 1 1.2792 2.7464 -0.0006 6 1 3.0978 1.6964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3877 0.0005 10 6 2.0012 -3.5550 0.0005 11 8 3.2162 -3.5549 0.0010 12 6 1.2571 -4.8438 0.0000 13 8 0.0488 -4.8473 -0.1217 14 7 1.9242 -6.0071 0.1346 15 6 3.3614 -6.0150 0.4396 16 6 3.6012 -6.8858 1.6769 17 6 3.0009 -8.2740 1.4428 18 6 1.4912 -8.1488 1.2255 19 6 1.2275 -7.2922 -0.0169 20 1 1.6001 -7.8078 -0.9019 21 6 -0.2532 -7.0507 -0.1589 22 7 -0.9050 -7.4862 -1.2553 23 8 -0.8585 -6.4644 0.7133 24 1 -0.4850 0.8400 -0.0004 25 1 0.3574 -2.3878 -0.0002 26 1 3.6984 -4.9976 0.6380 27 1 3.9125 -6.4238 -0.4074 28 1 4.6726 -6.9781 1.8547 29 1 3.1269 -6.4252 2.5435 30 1 3.4585 -8.7237 0.5617 31 1 3.1917 -8.9034 2.3120 32 1 1.0608 -9.1399 1.0822 33 1 1.0363 -7.6766 2.0963 34 1 -0.4209 -7.9554 -1.9529 35 1 -1.8581 -7.3311 -1.3467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042406423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:04 Heat of formation + Delta-G solvation = -111.221746 kcal Electronic energy + Delta-G solvation = -21529.611028 eV Core-core repulsion = 18141.399495 eV Total energy + Delta-G solvation = -3388.211533 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13442 -40.29203 -38.68877 -38.37743 -36.33766 -34.53703 -33.91788 -33.32507 -32.16296 -28.19417 -26.82133 -24.85677 -24.46118 -21.96236 -21.59346 -20.60844 -19.87018 -18.54460 -18.18327 -17.66786 -17.31153 -16.82333 -16.58905 -16.17838 -15.87790 -15.51343 -15.28165 -14.93576 -14.76358 -14.48141 -14.40868 -13.83938 -13.67043 -13.39494 -12.96483 -12.58019 -12.50888 -12.21616 -12.09696 -11.95541 -11.71540 -11.69090 -11.39764 -10.69739 -10.45214 -10.26770 -9.69189 -9.59031 -8.66153 -6.11904 0.60792 1.35172 1.44386 1.49015 1.56049 2.04543 2.27024 2.39832 2.57224 3.14079 3.16262 3.73873 3.88553 3.95508 3.97873 4.13212 4.19049 4.28587 4.53089 4.84518 4.88430 4.95633 5.10710 5.13864 5.22276 5.30515 5.45900 5.55529 5.66913 6.02032 6.13184 6.33388 6.55390 6.79545 6.98259 7.26775 7.57669 7.79246 8.49333 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.005666 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.147875 B = 4940.513787 C = 5737.853514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.007 4.007 3 Si 1.013 2.987 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.345 4.345 8 H 0.104 0.896 9 N -0.510 5.510 10 C 0.392 3.608 11 O -0.594 6.594 12 C 0.499 3.501 13 O -0.535 6.535 14 N -0.575 5.575 15 C 0.064 3.936 16 C -0.133 4.133 17 C -0.109 4.109 18 C -0.117 4.117 19 C 0.119 3.881 20 H 0.128 0.872 21 C 0.518 3.482 22 N -0.839 5.839 23 O -0.564 6.564 24 H 0.288 0.712 25 H 0.397 0.603 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.414 0.586 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -16.977 -1.958 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.211 4.211 3 Si 0.834 3.166 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.122 0.878 9 N -0.143 5.143 10 C 0.177 3.823 11 O -0.485 6.485 12 C 0.284 3.716 13 O -0.412 6.412 14 N -0.310 5.310 15 C -0.056 4.056 16 C -0.171 4.171 17 C -0.146 4.146 18 C -0.156 4.156 19 C 0.013 3.987 20 H 0.146 0.854 21 C 0.302 3.698 22 N -0.405 5.405 23 O -0.441 6.441 24 H 0.098 0.902 25 H 0.231 0.769 26 H 0.141 0.859 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.063 0.937 34 H 0.245 0.755 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.578 -16.454 -1.374 17.134 hybrid contribution -0.811 0.842 -0.332 1.215 sum 3.767 -15.612 -1.706 16.150 Atomic orbital electron populations 1.69569 1.08060 1.30860 1.45214 1.26616 0.96464 1.03715 0.94319 0.84708 0.77667 0.74500 0.79762 1.18572 1.19336 1.18716 1.20002 0.93812 0.82900 1.50741 0.87813 1.41687 1.10085 1.04904 1.57578 1.19551 0.87923 0.85084 0.89705 1.90228 1.13391 1.85667 1.59182 1.20319 0.87126 0.86162 0.78004 1.90892 1.14018 1.86836 1.49478 1.47758 1.11298 1.02902 1.69089 1.23039 0.77531 1.06552 0.98526 1.21963 1.02625 0.96020 0.96521 1.21534 0.92680 0.96296 1.04086 1.21860 0.99123 0.99670 0.94912 1.21585 0.89167 0.85219 1.02684 0.85414 1.20408 0.89954 0.76792 0.82605 1.43559 1.13584 1.61550 1.21779 1.90731 1.69928 1.39777 1.43660 0.90171 0.76892 0.85942 0.89726 0.88175 0.94058 0.88961 0.89328 0.87453 0.93690 0.75481 0.76571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.06 13.03 21.76 0.28 -49.78 16 2 C -0.01 -0.38 5.51 85.14 0.47 0.09 16 3 Si 1.01 41.33 29.56 68.60 2.03 43.35 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.34 -19.69 9.67 84.35 0.82 -18.87 16 8 H 0.10 5.95 7.15 -2.91 -0.02 5.93 16 9 N -0.51 -29.01 5.24 -308.88 -1.62 -30.63 16 10 C 0.39 20.67 7.68 87.08 0.67 21.34 16 11 O -0.59 -31.40 12.69 -3.71 -0.05 -31.45 16 12 C 0.50 23.48 7.57 87.08 0.66 24.13 16 13 O -0.53 -27.52 11.60 20.91 0.24 -27.28 16 14 N -0.57 -20.64 2.98 -801.37 -2.39 -23.02 16 15 C 0.06 1.98 6.01 86.36 0.52 2.50 16 16 C -0.13 -3.14 6.08 30.67 0.19 -2.95 16 17 C -0.11 -1.85 5.88 30.62 0.18 -1.67 16 18 C -0.12 -2.58 5.33 30.67 0.16 -2.42 16 19 C 0.12 3.24 3.31 44.22 0.15 3.39 16 20 H 0.13 2.34 7.92 -2.39 -0.02 2.32 16 21 C 0.52 17.22 5.07 87.66 0.44 17.67 16 22 N -0.84 -19.38 8.87 -173.53 -1.54 -20.92 16 23 O -0.56 -25.68 14.76 21.42 0.32 -25.36 16 24 H 0.29 14.73 8.30 -92.71 -0.77 13.96 16 25 H 0.40 23.45 7.37 -92.71 -0.68 22.77 16 26 H 0.12 4.89 4.21 -57.13 -0.24 4.65 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.32 7.99 -2.39 -0.02 1.30 16 34 H 0.41 5.91 8.67 -92.70 -0.80 5.10 16 35 H 0.40 9.10 8.93 -92.71 -0.83 8.27 16 Total: -1.00 -77.59 291.57 0.15 -77.44 By element: Atomic # 1 Polarization: 45.84 SS G_CDS: -1.38 Total: 44.46 kcal Atomic # 6 Polarization: 38.93 SS G_CDS: 4.25 Total: 43.19 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -5.26 Total: -124.35 kcal Atomic # 8 Polarization: -84.60 SS G_CDS: 0.51 Total: -84.08 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -77.59 0.15 -77.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042406423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.784 kcal (2) G-P(sol) polarization free energy of solvation -77.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds