Wall clock time and date at job start Mon Mar 30 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31015 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47223 * 90.00479 * 3 2 1 5 5 H 1.48504 * 109.46862 * 330.00447 * 3 2 1 6 6 H 1.48500 * 109.46948 * 210.00673 * 3 2 1 7 7 C 1.39582 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.36118 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00189 * 180.02562 * 9 7 2 11 11 O 1.21502 * 119.99694 * 359.97438 * 10 9 7 12 12 C 1.48830 * 120.00071 * 179.97438 * 10 9 7 13 13 O 1.21439 * 120.00439 * 6.33152 * 12 10 9 14 14 N 1.34781 * 120.00083 * 186.32835 * 12 10 9 15 15 C 1.46923 * 120.62707 * 6.20537 * 14 12 10 16 16 C 1.52756 * 109.01039 * 233.58128 * 15 14 12 17 17 C 1.53038 * 109.38633 * 305.59404 * 16 15 14 18 18 C 1.53039 * 109.53921 * 61.23270 * 17 16 15 19 19 C 1.46924 * 120.63199 * 186.48780 * 14 12 10 20 20 H 1.09001 * 109.58466 * 246.30200 * 19 14 12 21 21 C 1.50701 * 109.58734 * 6.57934 * 19 14 12 22 22 N 1.34779 * 120.00124 * 238.82696 * 21 19 14 23 23 O 1.21281 * 119.99715 * 58.82152 * 21 19 14 24 24 H 0.97000 * 120.00012 * 180.02562 * 1 2 3 25 25 H 0.97004 * 119.99718 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.58959 * 353.41749 * 15 14 12 27 27 H 1.09003 * 109.58773 * 113.84603 * 15 14 12 28 28 H 1.09000 * 109.57013 * 185.55387 * 16 15 14 29 29 H 1.08998 * 109.35866 * 65.50285 * 16 15 14 30 30 H 1.09008 * 109.45891 * 301.21522 * 17 16 15 31 31 H 1.08995 * 109.45502 * 181.25058 * 17 16 15 32 32 H 1.09004 * 109.50221 * 178.68557 * 18 17 16 33 33 H 1.09002 * 109.49464 * 58.59148 * 18 17 16 34 34 H 0.96995 * 120.00109 * 359.97438 * 22 21 19 35 35 H 0.96996 * 119.99977 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4917 2.0464 1.4000 5 1 1.4415 2.6527 -0.7000 6 1 3.5416 1.4402 -0.7002 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0014 -3.5548 -0.0005 11 8 3.2164 -3.5548 -0.0010 12 6 1.2573 -4.8438 0.0000 13 8 0.0484 -4.8471 -0.1155 14 7 1.9251 -6.0074 0.1287 15 6 3.3681 -6.0157 0.4047 16 6 4.0703 -6.8769 -0.6436 17 6 3.4276 -8.2655 -0.6735 18 6 1.9522 -8.1385 -1.0596 19 6 1.2250 -7.2916 -0.0105 20 1 1.2245 -7.8131 0.9467 21 6 -0.1946 -7.0478 -0.4536 22 7 -1.2211 -7.4801 0.3052 23 8 -0.4133 -6.4623 -1.4930 24 1 -0.4850 -0.8400 0.0004 25 1 0.3575 -2.3876 -0.0005 26 1 3.7550 -4.9977 0.3580 27 1 3.5482 -6.4322 1.3958 28 1 5.1266 -6.9702 -0.3914 29 1 3.9695 -6.4083 -1.6225 30 1 3.5068 -8.7236 0.3124 31 1 3.9422 -8.8879 -1.4055 32 1 1.5009 -9.1297 -1.1035 33 1 1.8714 -7.6579 -2.0347 34 1 -1.0462 -7.9485 1.1363 35 1 -2.1348 -7.3228 0.0202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042406425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:08 Heat of formation + Delta-G solvation = -88.019487 kcal Electronic energy + Delta-G solvation = -21587.543921 eV Core-core repulsion = 18200.338514 eV Total energy + Delta-G solvation = -3387.205408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72278 -38.73486 -37.32468 -36.89767 -34.78109 -33.35050 -32.53636 -31.32133 -31.00335 -26.44023 -25.07358 -23.72475 -22.87319 -20.71662 -20.47973 -19.08541 -18.18179 -17.36888 -16.86689 -16.44726 -15.86744 -15.05298 -14.98622 -14.65186 -14.48097 -14.05185 -13.87062 -13.77676 -13.54625 -13.17700 -12.99556 -12.52382 -12.08105 -11.44746 -11.40926 -11.12053 -11.08182 -10.91361 -10.71746 -10.31528 -10.08458 -9.96424 -9.77778 -9.44464 -9.29372 -8.41134 -8.33622 -7.84701 -7.07685 -4.11715 2.33084 2.72666 3.23807 3.28220 3.43097 3.47733 3.64875 4.11130 4.17620 4.65950 4.81541 4.88105 4.93943 5.09755 5.12649 5.23909 5.27478 5.58929 5.67035 5.75835 5.82139 5.93666 6.04201 6.12516 6.47076 6.55826 6.90392 7.05113 7.44480 7.55446 7.64291 7.84568 8.16538 8.42009 8.59065 8.71993 9.17205 9.62090 10.33792 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.005742 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.185233 B = 4875.392269 C = 5718.607945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.001 3.999 3 Si 1.099 2.901 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.384 4.384 8 H 0.112 0.888 9 N -0.502 5.502 10 C 0.398 3.602 11 O -0.576 6.576 12 C 0.511 3.489 13 O -0.520 6.520 14 N -0.582 5.582 15 C 0.047 3.953 16 C -0.131 4.131 17 C -0.118 4.118 18 C -0.121 4.121 19 C 0.125 3.875 20 H 0.082 0.918 21 C 0.535 3.465 22 N -0.857 5.857 23 O -0.521 6.521 24 H 0.272 0.728 25 H 0.389 0.611 26 H 0.177 0.823 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.393 0.607 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 -15.165 2.858 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.207 4.207 3 Si 0.923 3.077 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.514 4.514 8 H 0.130 0.870 9 N -0.136 5.136 10 C 0.184 3.816 11 O -0.466 6.466 12 C 0.297 3.703 13 O -0.395 6.395 14 N -0.318 5.318 15 C -0.073 4.073 16 C -0.170 4.170 17 C -0.156 4.156 18 C -0.159 4.159 19 C 0.017 3.983 20 H 0.100 0.900 21 C 0.320 3.680 22 N -0.421 5.421 23 O -0.395 6.395 24 H 0.084 0.916 25 H 0.224 0.776 26 H 0.192 0.808 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.221 0.779 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.030 -13.079 2.070 13.584 hybrid contribution -0.771 -2.260 0.409 2.423 sum 2.259 -15.339 2.480 15.701 Atomic orbital electron populations 1.70663 1.07003 1.30771 1.41450 1.26988 0.96298 1.03308 0.94134 0.83036 0.74521 0.72563 0.77553 1.20575 1.20240 1.20354 1.20833 0.95512 0.83477 1.51589 0.87017 1.41593 1.09547 1.05095 1.57328 1.18684 0.87620 0.83886 0.91416 1.90007 1.13024 1.83664 1.59932 1.20566 0.87390 0.85739 0.76565 1.90726 1.14107 1.85985 1.48732 1.47732 1.10182 1.02677 1.71240 1.23415 0.77986 1.09624 0.96241 1.21801 0.99418 0.94868 1.00880 1.21546 0.94661 0.97901 1.01457 1.21816 0.95937 0.99008 0.99161 1.21130 0.90750 0.86801 0.99580 0.90040 1.19856 0.86628 0.77096 0.84415 1.43671 1.09193 1.62866 1.26416 1.90740 1.84970 1.38433 1.25407 0.91601 0.77586 0.80795 0.93035 0.90869 0.91442 0.91930 0.91611 0.90894 0.90303 0.77930 0.76962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.88 13.66 55.53 0.76 -23.13 16 2 C 0.00 0.02 5.51 -17.40 -0.10 -0.08 16 3 Si 1.10 22.96 29.93 -169.99 -5.09 17.87 16 4 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.38 -10.53 9.67 -15.15 -0.15 -10.67 16 8 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 9 N -0.50 -13.37 5.24 -11.59 -0.06 -13.43 16 10 C 0.40 10.05 7.71 -11.88 -0.09 9.96 16 11 O -0.58 -14.79 12.64 5.36 0.07 -14.72 16 12 C 0.51 11.64 7.40 -11.87 -0.09 11.55 16 13 O -0.52 -12.60 12.16 -19.49 -0.24 -12.84 16 14 N -0.58 -10.69 2.98 -167.54 -0.50 -11.19 16 15 C 0.05 0.78 6.24 -3.94 -0.02 0.75 16 16 C -0.13 -1.77 6.06 -26.84 -0.16 -1.93 16 17 C -0.12 -1.30 5.89 -26.69 -0.16 -1.46 16 18 C -0.12 -1.54 5.33 -26.62 -0.14 -1.68 16 19 C 0.12 1.86 3.31 -68.75 -0.23 1.63 16 20 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 21 C 0.54 9.18 4.76 -10.98 -0.05 9.13 16 22 N -0.86 -10.70 8.87 31.22 0.28 -10.42 16 23 O -0.52 -11.61 15.28 -19.35 -0.30 -11.91 16 24 H 0.27 7.51 6.78 -40.82 -0.28 7.23 16 25 H 0.39 10.29 6.20 -40.82 -0.25 10.03 16 26 H 0.18 3.47 3.75 -56.96 -0.21 3.26 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.22 7.98 -51.93 -0.41 0.80 16 34 H 0.39 3.44 8.67 -40.82 -0.35 3.09 16 35 H 0.40 4.74 8.93 -40.82 -0.36 4.38 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -33.87 290.18 -5.89 -39.76 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -3.99 Total: 18.44 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: -1.19 Total: 17.19 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.48 Total: -58.17 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.46 Total: -39.47 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.09 Total: 17.87 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.87 -5.89 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042406425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.260 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds