Wall clock time and date at job start Mon Mar 30 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31015 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47223 * 90.00479 * 3 2 1 5 5 H 1.48504 * 109.46862 * 330.00447 * 3 2 1 6 6 H 1.48500 * 109.46948 * 210.00673 * 3 2 1 7 7 C 1.39582 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.36118 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00189 * 180.02562 * 9 7 2 11 11 O 1.21502 * 119.99694 * 359.97438 * 10 9 7 12 12 C 1.48830 * 120.00071 * 179.97438 * 10 9 7 13 13 O 1.21439 * 120.00439 * 6.33152 * 12 10 9 14 14 N 1.34781 * 120.00083 * 186.32835 * 12 10 9 15 15 C 1.46923 * 120.62707 * 6.20537 * 14 12 10 16 16 C 1.52756 * 109.01039 * 233.58128 * 15 14 12 17 17 C 1.53038 * 109.38633 * 305.59404 * 16 15 14 18 18 C 1.53039 * 109.53921 * 61.23270 * 17 16 15 19 19 C 1.46924 * 120.63199 * 186.48780 * 14 12 10 20 20 H 1.09001 * 109.58466 * 246.30200 * 19 14 12 21 21 C 1.50701 * 109.58734 * 6.57934 * 19 14 12 22 22 N 1.34779 * 120.00124 * 238.82696 * 21 19 14 23 23 O 1.21281 * 119.99715 * 58.82152 * 21 19 14 24 24 H 0.97000 * 120.00012 * 180.02562 * 1 2 3 25 25 H 0.97004 * 119.99718 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.58959 * 353.41749 * 15 14 12 27 27 H 1.09003 * 109.58773 * 113.84603 * 15 14 12 28 28 H 1.09000 * 109.57013 * 185.55387 * 16 15 14 29 29 H 1.08998 * 109.35866 * 65.50285 * 16 15 14 30 30 H 1.09008 * 109.45891 * 301.21522 * 17 16 15 31 31 H 1.08995 * 109.45502 * 181.25058 * 17 16 15 32 32 H 1.09004 * 109.50221 * 178.68557 * 18 17 16 33 33 H 1.09002 * 109.49464 * 58.59148 * 18 17 16 34 34 H 0.96995 * 120.00109 * 359.97438 * 22 21 19 35 35 H 0.96996 * 119.99977 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4917 2.0464 1.4000 5 1 1.4415 2.6527 -0.7000 6 1 3.5416 1.4402 -0.7002 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0014 -3.5548 -0.0005 11 8 3.2164 -3.5548 -0.0010 12 6 1.2573 -4.8438 0.0000 13 8 0.0484 -4.8471 -0.1155 14 7 1.9251 -6.0074 0.1287 15 6 3.3681 -6.0157 0.4047 16 6 4.0703 -6.8769 -0.6436 17 6 3.4276 -8.2655 -0.6735 18 6 1.9522 -8.1385 -1.0596 19 6 1.2250 -7.2916 -0.0105 20 1 1.2245 -7.8131 0.9467 21 6 -0.1946 -7.0478 -0.4536 22 7 -1.2211 -7.4801 0.3052 23 8 -0.4133 -6.4623 -1.4930 24 1 -0.4850 -0.8400 0.0004 25 1 0.3575 -2.3876 -0.0005 26 1 3.7550 -4.9977 0.3580 27 1 3.5482 -6.4322 1.3958 28 1 5.1266 -6.9702 -0.3914 29 1 3.9695 -6.4083 -1.6225 30 1 3.5068 -8.7236 0.3124 31 1 3.9422 -8.8879 -1.4055 32 1 1.5009 -9.1297 -1.1035 33 1 1.8714 -7.6579 -2.0347 34 1 -1.0462 -7.9485 1.1363 35 1 -2.1348 -7.3228 0.0202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042406425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:07 Heat of formation + Delta-G solvation = -115.769453 kcal Electronic energy + Delta-G solvation = -21588.747250 eV Core-core repulsion = 18200.338514 eV Total energy + Delta-G solvation = -3388.408736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.25974 -40.46448 -38.85120 -38.51084 -36.74224 -34.61337 -33.93755 -33.25964 -32.22523 -28.12410 -26.75642 -24.91603 -24.58540 -22.24361 -21.69053 -20.66712 -20.09068 -18.94020 -18.32194 -17.80463 -17.38642 -16.84995 -16.56921 -16.38121 -15.90199 -15.51571 -15.39651 -15.16196 -14.96356 -14.60127 -14.43687 -13.92390 -13.53802 -13.45475 -12.88649 -12.56025 -12.43460 -12.02419 -12.01171 -11.88931 -11.76010 -11.71675 -11.46302 -10.81148 -10.55232 -10.39597 -9.84051 -9.62609 -9.18223 -6.26128 0.48257 1.28422 1.54469 1.62603 1.83678 2.00020 2.28910 2.39344 2.49016 2.95934 3.07055 3.61547 3.76068 3.83905 3.92156 4.08058 4.15528 4.23694 4.48067 4.78162 4.83946 4.91679 5.04180 5.10732 5.24147 5.35849 5.40740 5.44848 5.74831 5.95420 6.01082 6.18408 6.46783 6.50568 6.81000 7.13726 7.47676 7.58573 8.25050 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.005742 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.185233 B = 4875.392269 C = 5718.607945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C -0.033 4.033 3 Si 1.146 2.854 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.414 4.414 8 H 0.100 0.900 9 N -0.522 5.522 10 C 0.398 3.602 11 O -0.583 6.583 12 C 0.505 3.495 13 O -0.540 6.540 14 N -0.571 5.571 15 C 0.042 3.958 16 C -0.129 4.129 17 C -0.109 4.109 18 C -0.118 4.118 19 C 0.118 3.882 20 H 0.131 0.869 21 C 0.525 3.475 22 N -0.835 5.835 23 O -0.583 6.583 24 H 0.260 0.740 25 H 0.386 0.614 26 H 0.139 0.861 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.415 0.585 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -17.668 4.131 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.235 4.235 3 Si 0.963 3.037 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.543 4.543 8 H 0.118 0.882 9 N -0.156 5.156 10 C 0.185 3.815 11 O -0.473 6.473 12 C 0.290 3.710 13 O -0.418 6.418 14 N -0.306 5.306 15 C -0.078 4.078 16 C -0.167 4.167 17 C -0.146 4.146 18 C -0.157 4.157 19 C 0.012 3.988 20 H 0.148 0.852 21 C 0.311 3.689 22 N -0.400 5.400 23 O -0.462 6.462 24 H 0.071 0.929 25 H 0.220 0.780 26 H 0.156 0.844 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.246 0.754 35 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.289 -15.670 3.401 16.598 hybrid contribution -1.110 -1.738 0.038 2.062 sum 3.179 -17.408 3.438 18.026 Atomic orbital electron populations 1.70768 1.07777 1.30044 1.43593 1.28512 0.96284 1.06230 0.92469 0.82525 0.73789 0.68722 0.78686 1.18627 1.19777 1.19090 1.20913 0.95149 0.84541 1.53710 0.88240 1.41713 1.09371 1.05581 1.58949 1.19454 0.87890 0.84875 0.89309 1.90080 1.13458 1.84730 1.59079 1.20135 0.87119 0.86192 0.77571 1.90717 1.14646 1.86442 1.49974 1.47811 1.11114 1.02737 1.68968 1.23345 0.76823 1.08418 0.99212 1.21790 1.00933 0.95847 0.98115 1.21546 0.92842 0.96311 1.03918 1.21869 0.97475 0.99784 0.96525 1.21606 0.89236 0.85222 1.02694 0.85165 1.20374 0.88267 0.76401 0.83872 1.43502 1.08646 1.61381 1.26460 1.90716 1.85990 1.41408 1.28047 0.92882 0.77992 0.84444 0.89529 0.88261 0.94480 0.88806 0.89374 0.87328 0.93865 0.75408 0.76528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.57 13.66 21.76 0.30 -50.27 16 2 C -0.03 -1.78 5.51 85.14 0.47 -1.31 16 3 Si 1.15 46.44 29.93 68.60 2.05 48.50 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.41 -23.59 9.67 84.35 0.82 -22.77 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 9 N -0.52 -29.10 5.24 -308.88 -1.62 -30.72 16 10 C 0.40 20.86 7.71 87.08 0.67 21.53 16 11 O -0.58 -30.88 12.64 -3.72 -0.05 -30.92 16 12 C 0.51 23.36 7.40 87.08 0.64 24.00 16 13 O -0.54 -26.78 12.16 20.29 0.25 -26.53 16 14 N -0.57 -20.23 2.98 -802.29 -2.39 -22.62 16 15 C 0.04 1.28 6.24 86.22 0.54 1.82 16 16 C -0.13 -3.12 6.06 30.53 0.19 -2.94 16 17 C -0.11 -1.88 5.89 30.62 0.18 -1.70 16 18 C -0.12 -2.62 5.33 30.67 0.16 -2.46 16 19 C 0.12 3.17 3.31 44.23 0.15 3.32 16 20 H 0.13 2.30 7.92 -2.39 -0.02 2.29 16 21 C 0.53 17.30 4.76 87.66 0.42 17.72 16 22 N -0.84 -19.01 8.87 -173.53 -1.54 -20.55 16 23 O -0.58 -26.37 15.28 20.78 0.32 -26.05 16 24 H 0.26 15.08 6.78 -92.71 -0.63 14.45 16 25 H 0.39 21.61 6.20 -92.71 -0.57 21.03 16 26 H 0.14 5.46 3.75 -82.14 -0.31 5.15 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.04 1.28 7.98 -2.39 -0.02 1.27 16 34 H 0.41 5.77 8.67 -92.71 -0.80 4.96 16 35 H 0.40 8.99 8.93 -92.71 -0.83 8.16 16 Total: -1.00 -78.83 290.18 0.35 -78.47 By element: Atomic # 1 Polarization: 44.69 SS G_CDS: -1.20 Total: 43.50 kcal Atomic # 6 Polarization: 32.97 SS G_CDS: 4.23 Total: 37.20 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -5.25 Total: -124.15 kcal Atomic # 8 Polarization: -84.03 SS G_CDS: 0.52 Total: -83.51 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.05 Total: 48.50 kcal Total: -78.83 0.35 -78.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042406425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.295 kcal (2) G-P(sol) polarization free energy of solvation -78.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds