Wall clock time and date at job start Mon Mar 30 2020 04:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00318 * 2 1 4 4 C 1.50702 * 109.47120 * 293.95550 * 3 2 1 5 5 H 1.08003 * 119.99431 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00393 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99771 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00397 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47302 * 89.99496 * 8 6 4 10 10 H 1.48495 * 109.47154 * 209.99999 * 8 6 4 11 11 H 1.48504 * 109.46645 * 329.99490 * 8 6 4 12 12 C 1.46904 * 110.99841 * 123.95253 * 2 1 3 13 13 C 1.50699 * 109.47250 * 66.04250 * 12 2 1 14 14 O 1.21283 * 119.99912 * 0.02562 * 13 12 2 15 15 C 1.46984 * 120.00221 * 180.02562 * 13 12 2 16 16 C 1.39944 * 120.18294 * 0.02562 * 15 13 12 17 17 C 1.37979 * 119.82395 * 179.97438 * 16 15 13 18 18 F 1.35099 * 119.90166 * 180.02562 * 17 16 15 19 19 C 1.38719 * 120.19548 * 359.73144 * 17 16 15 20 20 C 1.38202 * 120.37882 * 0.55517 * 19 17 16 21 21 C 1.38273 * 120.16993 * 359.43953 * 20 19 17 22 22 F 1.35102 * 120.10158 * 180.26043 * 21 20 19 23 23 H 1.09009 * 109.46970 * 296.05181 * 1 2 3 24 24 H 1.08998 * 109.46708 * 56.04280 * 1 2 3 25 25 H 1.08994 * 109.47491 * 176.05106 * 1 2 3 26 26 H 1.08999 * 109.47076 * 53.95164 * 3 2 1 27 27 H 1.09000 * 109.47220 * 173.95382 * 3 2 1 28 28 H 0.97006 * 119.99869 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47231 * 306.04720 * 12 2 1 30 30 H 1.08992 * 109.47245 * 186.04641 * 12 2 1 31 31 H 1.08002 * 120.08661 * 359.96082 * 16 15 13 32 32 H 1.08007 * 119.80942 * 180.27016 * 19 17 16 33 33 H 1.08002 * 119.91866 * 179.72504 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0747 1.5111 -2.0487 6 6 2.0278 3.3490 -1.5290 7 7 2.7130 4.0014 -0.6155 8 14 1.5840 4.1864 -3.1387 9 1 0.2719 4.8672 -2.9973 10 1 2.6267 5.1870 -3.4801 11 1 1.5006 3.1703 -4.2186 12 6 1.9955 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9730 14 8 1.0054 -2.5832 0.0032 15 6 2.0524 -3.1992 1.9877 16 6 2.7807 -2.7847 3.1085 17 6 3.1665 -3.7098 4.0568 18 9 3.8692 -3.3113 5.1396 19 6 2.8298 -5.0469 3.9046 20 6 2.1158 -5.4662 2.7980 21 6 1.7212 -4.5523 1.8384 22 9 1.0188 -4.9630 0.7598 23 1 -0.3633 0.4514 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3634 -1.0251 -0.0708 26 1 1.5612 1.9273 0.8309 27 1 3.0798 1.3443 0.1082 28 1 2.9876 4.9176 -0.7775 29 1 1.5611 -0.3872 2.0629 30 1 3.0797 -0.6611 1.1757 31 1 3.0402 -1.7435 3.2308 32 1 3.1312 -5.7650 4.6529 33 1 1.8615 -6.5097 2.6848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048013445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:01 Heat of formation + Delta-G solvation = -107.827994 kcal Electronic energy + Delta-G solvation = -19785.049628 eV Core-core repulsion = 16253.604992 eV Total energy + Delta-G solvation = -3531.444636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.04744 -49.97220 -41.07187 -39.27861 -37.65725 -34.65974 -33.16692 -31.10037 -30.05481 -28.80978 -26.45055 -25.18973 -23.76830 -22.47109 -21.01187 -18.92797 -18.60826 -18.34239 -18.15913 -17.15490 -17.01151 -16.54210 -16.42871 -16.26736 -16.02880 -15.69440 -15.41254 -15.19126 -14.89175 -14.46701 -14.12381 -13.74661 -13.59665 -13.33881 -13.01073 -12.79534 -12.68309 -12.64865 -12.59561 -12.31556 -11.99300 -11.45883 -10.66152 -10.61132 -10.41757 -9.72857 -9.07078 -8.21995 -6.31053 -0.70470 -0.13654 1.19582 1.40816 1.41830 1.53876 2.32164 2.38468 2.59328 2.98647 3.06604 3.10968 3.39070 3.44403 3.79509 3.94968 4.14076 4.26788 4.38864 4.48787 4.51537 4.64106 4.76004 4.81934 4.88001 4.94662 5.06850 5.13943 5.25030 5.60747 5.62945 6.00295 6.22213 6.38653 6.60027 6.83440 7.38230 8.88886 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.004070 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.176099 B = 6878.025525 C = 7646.531019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.546 5.546 3 C 0.207 3.793 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.966 3.034 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.270 1.270 12 C 0.008 3.992 13 C 0.397 3.603 14 O -0.454 6.454 15 C -0.186 4.186 16 C -0.079 4.079 17 C 0.075 3.925 18 F -0.134 7.134 19 C -0.075 4.075 20 C -0.125 4.125 21 C 0.124 3.876 22 F -0.132 7.132 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.069 0.931 26 H -0.027 1.027 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.164 0.836 32 H 0.188 0.812 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 -19.218 12.782 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.271 5.271 3 C 0.082 3.918 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.571 5.571 8 Si 0.791 3.209 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.194 1.194 12 C -0.121 4.121 13 C 0.274 3.726 14 O -0.329 6.329 15 C -0.188 4.188 16 C -0.098 4.098 17 C 0.055 3.945 18 F -0.112 7.112 19 C -0.094 4.094 20 C -0.144 4.144 21 C 0.104 3.896 22 F -0.110 7.110 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.088 0.912 26 H -0.009 1.009 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.182 0.818 32 H 0.206 0.794 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.652 -19.460 11.860 22.799 hybrid contribution -0.356 1.355 -0.114 1.405 sum 0.296 -18.105 11.747 21.584 Atomic orbital electron populations 1.22268 0.87565 1.01152 0.99915 1.61816 1.08467 1.15875 1.40913 1.19457 0.94200 0.82830 0.95352 1.21442 1.35093 0.97626 1.02497 0.92554 1.25821 0.94918 0.97854 1.00585 1.70055 1.39099 1.11915 1.35995 0.85424 0.78097 0.78074 0.79290 1.19749 1.20377 1.19443 1.22515 1.03153 0.91788 0.94598 1.22570 0.76052 0.90544 0.83463 1.90538 1.30829 1.82017 1.29542 1.20358 1.06139 0.93398 0.98947 1.21454 0.95248 1.01959 0.91122 1.17625 0.97461 0.93690 0.85688 1.91554 1.76240 1.91432 1.51999 1.21618 0.95259 0.94247 0.98235 1.21315 0.99385 1.01355 0.92298 1.18348 0.93633 0.92156 0.85438 1.91566 1.75740 1.90505 1.53202 0.96440 0.92459 0.91199 1.00883 0.96713 0.92548 0.90097 0.86514 0.81838 0.79445 0.79923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 9.03 127.69 1.15 2.83 16 2 N -0.55 -24.82 4.49 -931.65 -4.18 -29.01 16 3 C 0.21 11.04 4.72 85.56 0.40 11.44 16 4 C -0.53 -30.64 8.46 25.60 0.22 -30.43 16 5 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 8 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.01 0.27 4.06 85.56 0.35 0.62 16 13 C 0.40 13.01 6.84 27.98 0.19 13.20 16 14 O -0.45 -18.23 13.30 -3.04 -0.04 -18.27 16 15 C -0.19 -4.58 5.87 -20.12 -0.12 -4.69 16 16 C -0.08 -1.50 9.44 22.62 0.21 -1.29 16 17 C 0.07 1.16 7.29 22.32 0.16 1.33 16 18 F -0.13 -2.24 17.26 44.97 0.78 -1.47 16 19 C -0.08 -0.80 10.01 22.38 0.22 -0.57 16 20 C -0.13 -1.64 10.01 22.27 0.22 -1.42 16 21 C 0.12 2.80 7.29 22.73 0.17 2.96 16 22 F -0.13 -3.75 15.55 44.97 0.70 -3.05 16 23 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.06 2.62 6.76 -2.39 -0.02 2.61 16 25 H 0.07 2.83 5.88 -2.39 -0.01 2.82 16 26 H -0.03 -1.49 8.12 -2.39 -0.02 -1.51 16 27 H 0.01 0.82 7.93 -2.39 -0.02 0.80 16 28 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 29 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 30 H 0.12 3.69 7.88 -2.39 -0.02 3.67 16 31 H 0.16 2.77 7.05 -2.91 -0.02 2.75 16 32 H 0.19 0.61 8.06 -2.91 -0.02 0.58 16 33 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -71.09 294.60 4.34 -66.75 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: 1.14 Total: -1.54 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 3.64 Total: -5.19 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.90 Total: -84.21 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.04 Total: -18.27 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 1.48 Total: -4.51 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.09 4.34 -66.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048013445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.078 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds