Wall clock time and date at job start Mon Mar 30 2020 04:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.50706 * 109.47293 * 293.95211 * 3 2 1 5 5 H 1.08003 * 119.99552 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99706 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00377 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99837 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47221 * 59.99355 * 8 6 4 10 10 H 1.48496 * 109.47705 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47030 * 300.00009 * 8 6 4 12 12 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 13 13 C 1.50703 * 109.47107 * 66.04798 * 12 2 1 14 14 O 1.21273 * 119.99963 * 359.97438 * 13 12 2 15 15 C 1.47018 * 120.00053 * 180.02562 * 13 12 2 16 16 C 1.39937 * 120.13564 * 180.02562 * 15 13 12 17 17 C 1.37764 * 119.89528 * 179.97438 * 16 15 13 18 18 C 1.38662 * 120.17524 * 359.97438 * 17 16 15 19 19 F 1.35108 * 119.86343 * 179.97438 * 18 17 16 20 20 C 1.38895 * 120.27849 * 359.97438 * 18 17 16 21 21 F 1.35097 * 119.95321 * 179.97438 * 20 18 17 22 22 C 1.37968 * 120.09693 * 359.75127 * 20 18 17 23 23 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 24 24 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 25 25 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 26 26 H 1.09006 * 109.47466 * 53.95276 * 3 2 1 27 27 H 1.09000 * 109.46995 * 173.95474 * 3 2 1 28 28 H 0.97004 * 120.00259 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47043 * 186.04778 * 12 2 1 30 30 H 1.09001 * 109.47354 * 306.04839 * 12 2 1 31 31 H 1.07995 * 120.05396 * 359.97438 * 16 15 13 32 32 H 1.08004 * 119.91015 * 179.97438 * 17 16 15 33 33 H 1.08004 * 120.08925 * 180.25309 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5288 7 7 2.7128 4.0015 -0.6153 8 14 1.5827 4.1870 -3.1381 9 1 0.1054 4.2243 -3.2848 10 1 2.1149 5.5733 -3.1382 11 1 2.1735 3.4294 -4.2705 12 6 1.9955 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9729 14 8 1.0048 -2.5831 0.0035 15 6 2.0526 -3.1995 1.9878 16 6 1.7217 -4.5508 1.8374 17 6 2.1141 -5.4642 2.7912 18 6 2.8364 -5.0479 3.8992 19 9 3.2176 -5.9489 4.8311 20 6 3.1697 -3.7086 4.0553 21 9 3.8732 -3.3102 5.1376 22 6 2.7874 -2.7852 3.1042 23 1 -0.3634 0.4512 0.9232 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 1.5611 1.9274 0.8309 27 1 3.0797 1.3444 0.1082 28 1 2.9880 4.9174 -0.7776 29 1 3.0797 -0.6611 1.1757 30 1 1.5611 -0.3872 2.0628 31 1 1.1595 -4.8773 0.9750 32 1 1.8585 -6.5071 2.6756 33 1 3.0501 -1.7444 3.2236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050132643.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:04 Heat of formation + Delta-G solvation = -107.806293 kcal Electronic energy + Delta-G solvation = -19541.187606 eV Core-core repulsion = 16009.743912 eV Total energy + Delta-G solvation = -3531.443694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.62082 -49.69529 -41.21412 -39.22639 -37.60605 -34.63882 -32.80689 -31.68232 -29.94053 -28.73027 -26.36174 -24.97585 -24.06777 -22.45085 -20.99787 -19.19503 -18.57810 -18.25393 -18.05643 -17.46514 -17.20511 -16.64828 -16.37790 -16.09950 -15.99278 -15.62198 -15.56070 -15.19956 -15.01016 -14.45780 -14.12667 -13.75663 -13.53745 -13.35785 -13.11753 -12.78996 -12.64720 -12.60934 -12.53099 -12.30709 -11.96925 -11.46025 -10.64863 -10.59307 -10.26939 -9.92490 -9.03534 -8.20071 -6.29188 -0.75377 -0.12703 1.14731 1.42608 1.45124 1.53149 2.35449 2.40160 2.54229 2.73773 3.12911 3.14695 3.39756 3.42666 3.75319 3.91712 4.20680 4.31874 4.42343 4.50253 4.56229 4.60167 4.69737 4.72917 4.86959 5.08591 5.11846 5.17440 5.28890 5.53385 5.64808 6.03070 6.25590 6.42544 6.64008 6.85680 7.40150 8.90505 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.038356 B = 0.003586 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.822663 B = 7806.578356 C = 8371.476197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.544 5.544 3 C 0.206 3.794 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.000 4.000 13 C 0.408 3.592 14 O -0.453 6.453 15 C -0.149 4.149 16 C -0.038 4.038 17 C -0.121 4.121 18 C 0.090 3.910 19 F -0.129 7.129 20 C 0.045 3.955 21 F -0.134 7.134 22 C -0.074 4.074 23 H 0.015 0.985 24 H 0.055 0.945 25 H 0.076 0.924 26 H -0.028 1.028 27 H 0.014 0.986 28 H 0.265 0.735 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.184 0.816 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -18.549 9.704 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.268 5.268 3 C 0.081 3.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.195 1.195 12 C -0.128 4.128 13 C 0.285 3.715 14 O -0.328 6.328 15 C -0.151 4.151 16 C -0.056 4.056 17 C -0.140 4.140 18 C 0.070 3.930 19 F -0.108 7.108 20 C 0.025 3.975 21 F -0.113 7.113 22 C -0.093 4.093 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.094 0.906 26 H -0.011 1.011 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.180 0.820 32 H 0.202 0.798 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.962 -18.811 8.876 20.822 hybrid contribution 0.058 1.226 0.616 1.373 sum -0.904 -17.585 9.492 20.004 Atomic orbital electron populations 1.22295 0.87484 1.01462 0.99792 1.61838 1.08495 1.15663 1.40845 1.19453 0.94158 0.83074 0.95248 1.21433 1.35039 0.97574 1.02554 0.92324 1.25830 0.94991 0.97924 1.00534 1.70049 1.39168 1.11952 1.36008 0.85487 0.78786 0.77243 0.79414 1.19401 1.20676 1.19542 1.22594 1.03163 0.92501 0.94566 1.22434 0.75685 0.90009 0.83378 1.90492 1.30925 1.81908 1.29483 1.20325 1.02771 0.95471 0.96504 1.21545 0.95055 0.90436 0.98565 1.21314 0.98048 1.03223 0.91373 1.18202 1.00050 0.85025 0.89738 1.91547 1.89187 1.66190 1.63830 1.17630 1.00249 0.92038 0.87570 1.91539 1.76375 1.91151 1.52203 1.21496 0.95398 1.01155 0.91248 0.96651 0.92622 0.90574 1.01063 0.96838 0.92613 0.86682 0.90269 0.81994 0.79842 0.81524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 9.03 127.69 1.15 2.66 16 2 N -0.54 -23.38 4.49 -931.61 -4.18 -27.57 16 3 C 0.21 10.71 4.72 85.56 0.40 11.11 16 4 C -0.53 -29.91 8.46 25.60 0.22 -29.69 16 5 H 0.06 3.32 7.12 -2.91 -0.02 3.30 16 6 C 0.01 0.31 5.46 84.65 0.46 0.78 16 7 N -0.93 -55.07 13.29 21.44 0.28 -54.79 16 8 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.00 0.01 4.05 85.56 0.35 0.35 16 13 C 0.41 11.43 6.84 27.99 0.19 11.62 16 14 O -0.45 -15.29 14.30 -3.01 -0.04 -15.33 16 15 C -0.15 -3.08 5.87 -20.16 -0.12 -3.20 16 16 C -0.04 -0.62 9.59 22.57 0.22 -0.40 16 17 C -0.12 -1.61 10.00 22.26 0.22 -1.38 16 18 C 0.09 1.57 7.31 22.53 0.16 1.74 16 19 F -0.13 -2.45 17.17 44.97 0.77 -1.68 16 20 C 0.05 0.88 7.29 22.36 0.16 1.05 16 21 F -0.13 -2.96 17.17 44.97 0.77 -2.19 16 22 C -0.07 -1.39 9.44 22.61 0.21 -1.18 16 23 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.05 2.42 6.76 -2.38 -0.02 2.41 16 25 H 0.08 2.78 5.88 -2.39 -0.01 2.77 16 26 H -0.03 -1.56 8.12 -2.38 -0.02 -1.58 16 27 H 0.01 0.74 7.93 -2.39 -0.02 0.72 16 28 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.12 3.40 7.87 -2.39 -0.02 3.38 16 30 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.16 2.39 7.64 -2.91 -0.02 2.37 16 32 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.17 2.75 7.05 -2.91 -0.02 2.73 16 Total: -1.00 -66.51 296.31 4.40 -62.11 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: 1.14 Total: -0.22 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 3.64 Total: -6.55 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -3.90 Total: -82.36 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.04 Total: -15.33 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.54 Total: -3.87 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -66.51 4.40 -62.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132643.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.698 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds