Wall clock time and date at job start Mon Mar 30 2020 04:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00077 * 2 1 4 4 C 1.50699 * 109.46974 * 293.95251 * 3 2 1 5 5 H 1.08000 * 119.99918 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00472 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99611 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47272 * 90.00009 * 8 6 4 10 10 H 1.48504 * 109.47081 * 209.99687 * 8 6 4 11 11 H 1.48497 * 109.47322 * 329.99835 * 8 6 4 12 12 C 1.46899 * 111.00111 * 123.94949 * 2 1 3 13 13 C 1.50705 * 109.46977 * 66.05089 * 12 2 1 14 14 O 1.21294 * 119.99723 * 359.97438 * 13 12 2 15 15 C 1.46797 * 119.99854 * 180.02562 * 13 12 2 16 16 C 1.40215 * 120.21829 * 179.97438 * 15 13 12 17 17 F 1.35103 * 120.10905 * 359.70135 * 16 15 13 18 18 C 1.38155 * 119.77466 * 179.97438 * 16 15 13 19 19 C 1.38343 * 120.21781 * 0.02562 * 18 16 15 20 20 C 1.38333 * 120.45286 * 359.95453 * 19 18 16 21 21 C 1.38156 * 120.22409 * 0.04525 * 20 19 18 22 22 F 1.35098 * 120.11845 * 179.97438 * 21 20 19 23 23 H 1.08995 * 109.47179 * 296.04407 * 1 2 3 24 24 H 1.08999 * 109.47113 * 56.05324 * 1 2 3 25 25 H 1.09003 * 109.46830 * 176.04925 * 1 2 3 26 26 H 1.09004 * 109.47190 * 53.95066 * 3 2 1 27 27 H 1.08991 * 109.47257 * 173.95386 * 3 2 1 28 28 H 0.96995 * 120.00021 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47209 * 306.05141 * 12 2 1 30 30 H 1.09001 * 109.47466 * 186.04366 * 12 2 1 31 31 H 1.07999 * 119.88787 * 180.02562 * 18 16 15 32 32 H 1.08001 * 119.76826 * 179.97438 * 19 18 16 33 33 H 1.08005 * 119.89092 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0268 3.3494 -1.5286 7 7 1.7135 3.9392 -2.6615 8 14 2.9999 4.2761 -0.2310 9 1 4.4523 4.0637 -0.4560 10 1 2.6918 5.7260 -0.3228 11 1 2.6294 3.7756 1.1170 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2204 0.9729 14 8 1.0048 -2.5831 0.0034 15 6 2.0521 -3.1979 1.9864 16 6 1.7207 -4.5522 1.8380 17 9 1.0119 -4.9627 0.7636 18 6 2.1165 -5.4644 2.7971 19 6 2.8370 -5.0454 3.9012 20 6 3.1693 -3.7116 4.0566 21 6 2.7830 -2.7836 3.1089 22 9 3.1083 -1.4815 3.2630 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0796 1.3444 0.1082 28 1 1.9880 4.8553 -2.8235 29 1 1.5611 -0.3872 2.0628 30 1 3.0797 -0.6611 1.1757 31 1 1.8625 -6.5081 2.6845 32 1 3.1424 -5.7647 4.6468 33 1 3.7325 -3.3945 4.9220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050132649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:08 Heat of formation + Delta-G solvation = -77.892060 kcal Electronic energy + Delta-G solvation = -20223.705065 eV Core-core repulsion = 16693.558549 eV Total energy + Delta-G solvation = -3530.146516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.43285 -49.18241 -39.76506 -38.45202 -36.02564 -32.45240 -31.89712 -30.76501 -28.78073 -27.39424 -24.84499 -23.53382 -22.91518 -20.61899 -19.96194 -18.40381 -17.43621 -16.91597 -16.68476 -16.47859 -15.92342 -15.56434 -15.30435 -14.89150 -14.73731 -14.65011 -14.04191 -14.01768 -13.64431 -13.11378 -12.66487 -12.38740 -12.29449 -12.19880 -11.94940 -11.69852 -11.08626 -10.93734 -10.61688 -10.50601 -9.97297 -9.47050 -9.42773 -9.16658 -9.16178 -8.54549 -7.37799 -6.02053 -3.99527 0.13927 0.58114 2.26530 3.12224 3.29959 3.37056 3.38712 3.41743 3.75966 3.96932 4.23111 4.29443 4.43917 4.65420 4.88626 5.09199 5.28987 5.29819 5.39502 5.54950 5.62974 5.67034 5.68140 5.76646 6.19973 6.28626 6.29669 6.75297 6.88456 7.00271 7.55064 7.64824 7.87734 8.04744 8.67718 9.07917 9.58880 11.11111 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.004796 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.466828 B = 5836.239724 C = 6588.170624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.012 3.988 13 C 0.389 3.611 14 O -0.410 6.410 15 C -0.235 4.235 16 C 0.184 3.816 17 F -0.108 7.108 18 C -0.181 4.181 19 C -0.036 4.036 20 C -0.179 4.179 21 C 0.175 3.825 22 F -0.115 7.115 23 H 0.008 0.992 24 H 0.082 0.918 25 H 0.061 0.939 26 H -0.009 1.009 27 H 0.025 0.975 28 H 0.264 0.736 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 -18.660 17.541 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.117 4.117 13 C 0.263 3.737 14 O -0.282 6.282 15 C -0.238 4.238 16 C 0.164 3.836 17 F -0.085 7.085 18 C -0.200 4.200 19 C -0.054 4.054 20 C -0.198 4.198 21 C 0.155 3.845 22 F -0.093 7.093 23 H 0.026 0.974 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.008 0.992 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.912 -18.846 16.423 25.167 hybrid contribution 0.338 1.197 1.311 1.807 sum 3.250 -17.650 17.734 25.230 Atomic orbital electron populations 1.22401 0.87570 1.01212 1.00607 1.61794 1.08162 1.16323 1.38125 1.20232 0.94919 0.83638 0.97594 1.21024 1.35652 0.97199 1.00804 0.89971 1.24890 0.95820 0.97284 0.95308 1.69893 1.46885 1.13260 1.23859 0.86874 0.80919 0.79316 0.82735 1.20096 1.21166 1.19259 1.22575 1.02440 0.91463 0.95189 1.22338 0.77545 0.90385 0.83472 1.90565 1.28628 1.81456 1.27536 1.20906 1.07943 0.95103 0.99887 1.17633 0.90832 0.90776 0.84375 1.91634 1.74450 1.90191 1.52270 1.21225 1.03169 1.00572 0.95035 1.21040 0.93240 0.95085 0.96016 1.21196 1.04905 0.93059 1.00619 1.17606 0.94566 0.78914 0.93430 1.91600 1.89808 1.32813 1.95046 0.97375 0.89885 0.91999 0.99166 0.95721 0.92658 0.91976 0.87638 0.83435 0.83464 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.03 60.06 0.54 1.19 16 2 N -0.52 -11.83 4.49 -245.82 -1.10 -12.93 16 3 C 0.16 4.07 3.79 -4.97 -0.02 4.05 16 4 C -0.51 -14.94 9.01 -34.44 -0.31 -15.25 16 5 H 0.08 2.65 7.37 -52.49 -0.39 2.26 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 8 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 C 0.01 0.22 3.64 -4.97 -0.02 0.20 16 13 C 0.39 6.66 6.83 -30.85 -0.21 6.45 16 14 O -0.41 -8.29 13.30 5.55 0.07 -8.22 16 15 C -0.24 -3.11 5.88 -104.96 -0.62 -3.73 16 16 C 0.18 2.19 7.29 -38.87 -0.28 1.90 16 17 F -0.11 -1.54 15.55 2.25 0.04 -1.50 16 18 C -0.18 -1.40 10.01 -39.57 -0.40 -1.80 16 19 C -0.04 -0.21 10.03 -39.51 -0.40 -0.60 16 20 C -0.18 -1.30 10.01 -39.58 -0.40 -1.70 16 21 C 0.17 1.89 7.26 -38.87 -0.28 1.60 16 22 F -0.11 -1.36 13.76 2.25 0.03 -1.33 16 23 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 24 H 0.08 1.94 6.76 -51.93 -0.35 1.59 16 25 H 0.06 1.27 5.88 -51.93 -0.31 0.96 16 26 H -0.01 -0.23 7.18 -51.93 -0.37 -0.61 16 27 H 0.02 0.61 7.36 -51.93 -0.38 0.23 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.06 1.04 7.39 -51.93 -0.38 0.66 16 30 H 0.11 1.79 7.20 -51.93 -0.37 1.42 16 31 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.15 0.34 8.06 -52.49 -0.42 -0.09 16 33 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 287.29 15.07 4.33 4.33 Total: -1.00 -34.02 287.29 -6.43 -40.45 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -3.41 Total: -4.77 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.48 Total: -5.74 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.33 Total: -40.24 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.22 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.07 Total: -2.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.02 -6.43 -40.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.443 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds