Wall clock time and date at job start Mon Mar 30 2020 04:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00077 * 2 1 4 4 C 1.50699 * 109.46974 * 293.95251 * 3 2 1 5 5 H 1.08000 * 119.99918 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00472 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99611 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47272 * 90.00009 * 8 6 4 10 10 H 1.48504 * 109.47081 * 209.99687 * 8 6 4 11 11 H 1.48497 * 109.47322 * 329.99835 * 8 6 4 12 12 C 1.46899 * 111.00111 * 123.94949 * 2 1 3 13 13 C 1.50705 * 109.46977 * 66.05089 * 12 2 1 14 14 O 1.21294 * 119.99723 * 359.97438 * 13 12 2 15 15 C 1.46797 * 119.99854 * 180.02562 * 13 12 2 16 16 C 1.40215 * 120.21829 * 179.97438 * 15 13 12 17 17 F 1.35103 * 120.10905 * 359.70135 * 16 15 13 18 18 C 1.38155 * 119.77466 * 179.97438 * 16 15 13 19 19 C 1.38343 * 120.21781 * 0.02562 * 18 16 15 20 20 C 1.38333 * 120.45286 * 359.95453 * 19 18 16 21 21 C 1.38156 * 120.22409 * 0.04525 * 20 19 18 22 22 F 1.35098 * 120.11845 * 179.97438 * 21 20 19 23 23 H 1.08995 * 109.47179 * 296.04407 * 1 2 3 24 24 H 1.08999 * 109.47113 * 56.05324 * 1 2 3 25 25 H 1.09003 * 109.46830 * 176.04925 * 1 2 3 26 26 H 1.09004 * 109.47190 * 53.95066 * 3 2 1 27 27 H 1.08991 * 109.47257 * 173.95386 * 3 2 1 28 28 H 0.96995 * 120.00021 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47209 * 306.05141 * 12 2 1 30 30 H 1.09001 * 109.47466 * 186.04366 * 12 2 1 31 31 H 1.07999 * 119.88787 * 180.02562 * 18 16 15 32 32 H 1.08001 * 119.76826 * 179.97438 * 19 18 16 33 33 H 1.08005 * 119.89092 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0268 3.3494 -1.5286 7 7 1.7135 3.9392 -2.6615 8 14 2.9999 4.2761 -0.2310 9 1 4.4523 4.0637 -0.4560 10 1 2.6918 5.7260 -0.3228 11 1 2.6294 3.7756 1.1170 12 6 1.9955 -0.7659 1.1376 13 6 1.6370 -2.2204 0.9729 14 8 1.0048 -2.5831 0.0034 15 6 2.0521 -3.1979 1.9864 16 6 1.7207 -4.5522 1.8380 17 9 1.0119 -4.9627 0.7636 18 6 2.1165 -5.4644 2.7971 19 6 2.8370 -5.0454 3.9012 20 6 3.1693 -3.7116 4.0566 21 6 2.7830 -2.7836 3.1089 22 9 3.1083 -1.4815 3.2630 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0796 1.3444 0.1082 28 1 1.9880 4.8553 -2.8235 29 1 1.5611 -0.3872 2.0628 30 1 3.0797 -0.6611 1.1757 31 1 1.8625 -6.5081 2.6845 32 1 3.1424 -5.7647 4.6468 33 1 3.7325 -3.3945 4.9220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050132649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:08 Heat of formation + Delta-G solvation = -101.862924 kcal Electronic energy + Delta-G solvation = -20224.744520 eV Core-core repulsion = 16693.558549 eV Total energy + Delta-G solvation = -3531.185971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.25624 -50.10929 -40.96037 -39.36162 -37.75980 -34.65241 -32.83482 -31.44003 -30.54220 -29.10622 -26.39296 -24.74115 -23.77527 -22.31245 -21.28159 -19.23403 -19.04330 -18.19953 -17.93696 -17.44940 -16.74532 -16.62179 -16.50782 -16.27651 -16.13445 -15.84299 -15.65022 -15.33222 -15.22354 -14.53598 -14.09090 -13.71137 -13.57977 -13.13020 -12.97259 -12.90041 -12.83877 -12.62002 -12.46091 -12.36472 -11.92057 -11.57687 -10.80171 -10.73063 -10.23455 -9.85937 -9.13756 -8.29724 -6.34970 -0.69901 -0.09103 1.19743 1.34650 1.37304 1.48081 2.34017 2.35326 2.54858 2.68350 3.02591 3.24606 3.27503 3.51193 3.71432 4.08666 4.13201 4.16968 4.32069 4.41580 4.52069 4.63178 4.72148 4.82209 4.90181 4.93631 4.98492 5.10855 5.11474 5.46653 5.65100 5.88473 6.14284 6.41120 6.57195 6.70807 7.28373 8.87373 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.004796 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.466828 B = 5836.239724 C = 6588.170624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.546 5.546 3 C 0.173 3.827 4 C -0.524 4.524 5 H 0.031 0.969 6 C 0.007 3.993 7 N -0.949 5.949 8 Si 0.954 3.046 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.247 1.247 12 C 0.012 3.988 13 C 0.390 3.610 14 O -0.459 6.459 15 C -0.265 4.265 16 C 0.156 3.844 17 F -0.133 7.133 18 C -0.168 4.168 19 C -0.008 4.008 20 C -0.163 4.163 21 C 0.163 3.837 22 F -0.125 7.125 23 H 0.025 0.975 24 H 0.050 0.950 25 H 0.068 0.932 26 H -0.003 1.003 27 H 0.036 0.964 28 H 0.268 0.732 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.176 0.824 32 H 0.200 0.800 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -20.215 22.039 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.271 5.271 3 C 0.046 3.954 4 C -0.562 4.562 5 H 0.049 0.951 6 C -0.190 4.190 7 N -0.590 5.590 8 Si 0.776 3.224 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.170 1.170 12 C -0.116 4.116 13 C 0.268 3.732 14 O -0.335 6.335 15 C -0.268 4.268 16 C 0.136 3.864 17 F -0.111 7.111 18 C -0.186 4.186 19 C -0.025 4.025 20 C -0.181 4.181 21 C 0.143 3.857 22 F -0.103 7.103 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.194 0.806 32 H 0.217 0.783 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.037 -20.426 20.948 29.688 hybrid contribution -0.324 1.535 -0.053 1.570 sum 4.712 -18.891 20.894 28.559 Atomic orbital electron populations 1.22237 0.87433 1.01149 0.99932 1.61631 1.08618 1.15460 1.41362 1.20000 0.95451 0.84766 0.95144 1.21234 1.35399 0.97776 1.01784 0.95101 1.25921 0.96928 0.98212 0.97970 1.70063 1.48446 1.13964 1.26485 0.85628 0.79350 0.77528 0.79918 1.18646 1.20528 1.17026 1.22699 1.02975 0.91898 0.94015 1.22537 0.76313 0.90670 0.83706 1.90544 1.31223 1.82019 1.29694 1.20599 1.10959 0.94898 1.00327 1.18095 0.92040 0.91188 0.85093 1.91568 1.75358 1.90333 1.53825 1.21641 1.01882 1.01119 0.94004 1.21690 0.90111 0.95294 0.95442 1.21669 1.03466 0.92846 1.00130 1.17861 0.94965 0.79175 0.93657 1.91564 1.89931 1.33758 1.95060 0.95676 0.93109 0.91370 0.98510 0.94613 0.92284 0.90101 0.86497 0.80637 0.78322 0.79953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.83 9.03 127.69 1.15 2.98 16 2 N -0.55 -25.54 4.49 -931.65 -4.18 -29.73 16 3 C 0.17 8.74 3.79 85.56 0.32 9.06 16 4 C -0.52 -32.05 9.01 25.60 0.23 -31.82 16 5 H 0.03 2.14 7.37 -2.91 -0.02 2.12 16 6 C 0.01 0.41 5.47 84.65 0.46 0.88 16 7 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 8 Si 0.95 44.57 27.47 68.60 1.88 46.45 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.25 -10.63 6.54 99.48 0.65 -9.97 16 12 C 0.01 0.44 3.64 85.56 0.31 0.76 16 13 C 0.39 13.73 6.83 27.93 0.19 13.92 16 14 O -0.46 -19.67 13.30 -3.07 -0.04 -19.71 16 15 C -0.26 -6.84 5.88 -20.08 -0.12 -6.96 16 16 C 0.16 3.55 7.29 22.73 0.17 3.72 16 17 F -0.13 -3.92 15.55 44.97 0.70 -3.22 16 18 C -0.17 -1.94 10.01 22.27 0.22 -1.72 16 19 C -0.01 -0.04 10.03 22.32 0.22 0.18 16 20 C -0.16 -1.53 10.01 22.27 0.22 -1.31 16 21 C 0.16 3.11 7.26 22.73 0.17 3.27 16 22 F -0.12 -2.70 13.76 44.97 0.62 -2.08 16 23 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 2.56 6.76 -2.39 -0.02 2.54 16 25 H 0.07 2.96 5.88 -2.39 -0.01 2.95 16 26 H 0.00 -0.13 7.18 -2.39 -0.02 -0.15 16 27 H 0.04 1.72 7.36 -2.39 -0.02 1.71 16 28 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 29 H 0.08 2.62 7.39 -2.39 -0.02 2.60 16 30 H 0.12 3.90 7.20 -2.39 -0.02 3.89 16 31 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.20 -0.78 8.06 -2.91 -0.02 -0.80 16 33 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -80.49 287.29 3.92 -76.58 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: 1.08 Total: -0.32 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 3.55 Total: -7.03 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -3.88 Total: -90.67 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 1.32 Total: -5.30 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -80.49 3.92 -76.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.284 kcal (2) G-P(sol) polarization free energy of solvation -80.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds