Wall clock time and date at job start Mon Mar 30 2020 04:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99818 * 2 1 4 4 C 1.50692 * 109.47524 * 293.95687 * 3 2 1 5 5 H 1.08002 * 120.00301 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00141 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00143 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99898 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47381 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46930 * 120.00217 * 8 6 4 11 11 H 1.48496 * 109.47525 * 240.00250 * 8 6 4 12 12 C 1.46901 * 110.99924 * 123.95566 * 2 1 3 13 13 C 1.50701 * 109.47142 * 66.04960 * 12 2 1 14 14 O 1.21300 * 119.99798 * 359.97438 * 13 12 2 15 15 C 1.46827 * 119.99770 * 179.97438 * 13 12 2 16 16 C 1.40037 * 120.17137 * 359.72334 * 15 13 12 17 17 C 1.37631 * 119.87276 * 180.22775 * 16 15 13 18 18 C 1.38838 * 120.22519 * 0.07105 * 17 16 15 19 19 F 1.35102 * 119.82223 * 179.97438 * 18 17 16 20 20 C 1.38526 * 120.34694 * 359.94860 * 18 17 16 21 21 C 1.38129 * 120.12068 * 0.02562 * 20 18 17 22 22 F 1.35096 * 120.11536 * 179.97438 * 21 20 18 23 23 H 1.08996 * 109.46798 * 296.03977 * 1 2 3 24 24 H 1.08999 * 109.47101 * 56.04801 * 1 2 3 25 25 H 1.09007 * 109.46554 * 176.04539 * 1 2 3 26 26 H 1.09009 * 109.46942 * 53.95840 * 3 2 1 27 27 H 1.08999 * 109.47369 * 173.95241 * 3 2 1 28 28 H 0.96994 * 120.00084 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47263 * 306.04813 * 12 2 1 30 30 H 1.09001 * 109.46774 * 186.04511 * 12 2 1 31 31 H 1.07994 * 120.05690 * 0.25123 * 16 15 13 32 32 H 1.07999 * 119.88372 * 180.02562 * 17 16 15 33 33 H 1.07996 * 119.93920 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2983 5 1 1.0739 1.5116 -2.0484 6 6 2.0267 3.3496 -1.5283 7 7 2.7119 4.0020 -0.6148 8 14 1.5829 4.1870 -3.1380 9 1 0.8156 3.2444 -3.9913 10 1 0.7549 5.3878 -2.8594 11 1 2.8247 4.5946 -3.8429 12 6 1.9955 -0.7660 1.1376 13 6 1.6370 -2.2205 0.9728 14 8 1.0047 -2.5831 0.0032 15 6 2.0532 -3.1984 1.9858 16 6 2.7882 -2.7845 3.1035 17 6 3.1791 -3.7072 4.0470 18 6 2.8485 -5.0468 3.8934 19 9 3.2369 -5.9457 4.8242 20 6 2.1220 -5.4665 2.7911 21 6 1.7219 -4.5526 1.8358 22 9 1.0139 -4.9621 0.7605 23 1 -0.3633 0.4511 0.9233 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0709 26 1 1.5611 1.9273 0.8310 27 1 3.0797 1.3445 0.1083 28 1 2.9865 4.9180 -0.7767 29 1 1.5612 -0.3874 2.0627 30 1 3.0798 -0.6611 1.1756 31 1 3.0474 -1.7432 3.2251 32 1 3.7457 -3.3881 4.9093 33 1 1.8681 -6.5101 2.6784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050132693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:11 Heat of formation + Delta-G solvation = -88.155571 kcal Electronic energy + Delta-G solvation = -19703.867121 eV Core-core repulsion = 16173.275546 eV Total energy + Delta-G solvation = -3530.591575 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.42928 -49.15345 -39.88823 -38.24181 -35.93125 -32.56652 -31.83284 -30.92502 -28.31048 -26.97224 -24.68522 -23.84409 -23.00358 -20.86261 -19.66569 -18.53227 -17.44891 -16.86815 -16.35034 -16.27857 -15.97421 -15.63210 -15.06703 -14.92669 -14.74676 -14.44916 -14.40536 -13.86755 -13.48505 -13.22754 -12.67771 -12.55586 -12.22094 -11.93733 -11.76503 -11.46702 -11.07728 -10.87565 -10.71058 -10.56210 -10.01606 -9.50467 -9.49385 -9.09866 -9.05260 -8.45853 -7.30089 -6.05130 -4.05665 0.16590 0.66022 2.25164 3.22407 3.31324 3.38771 3.43608 3.45077 3.84364 4.01330 4.18158 4.43206 4.45187 4.72786 5.00205 5.07468 5.31469 5.37820 5.49578 5.54435 5.66211 5.68857 5.74976 5.78420 6.24131 6.33041 6.33743 6.83628 7.18916 7.25838 7.69261 7.78822 8.03044 8.13859 8.49290 9.02541 9.58759 11.05980 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.039084 B = 0.003724 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.224700 B = 7517.909720 C = 8062.505126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.013 3.987 13 C 0.389 3.611 14 O -0.415 6.415 15 C -0.206 4.206 16 C -0.015 4.015 17 C -0.176 4.176 18 C 0.154 3.846 19 F -0.128 7.128 20 C -0.209 4.209 21 C 0.184 3.816 22 F -0.108 7.108 23 H 0.007 0.993 24 H 0.076 0.924 25 H 0.059 0.941 26 H -0.007 1.007 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -16.391 11.800 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.116 4.116 13 C 0.263 3.737 14 O -0.287 6.287 15 C -0.208 4.208 16 C -0.034 4.034 17 C -0.195 4.195 18 C 0.134 3.866 19 F -0.107 7.107 20 C -0.229 4.229 21 C 0.164 3.836 22 F -0.086 7.086 23 H 0.026 0.974 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.011 0.989 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.670 -16.679 10.848 19.908 hybrid contribution -0.364 0.662 0.085 0.760 sum 0.306 -16.018 10.933 19.396 Atomic orbital electron populations 1.22370 0.88147 1.00862 1.00325 1.61963 1.07753 1.17679 1.37882 1.19802 0.95390 0.81079 0.97018 1.21196 1.34719 0.96861 1.01656 0.91639 1.24980 0.95267 0.97296 0.97072 1.69957 1.38523 1.11438 1.34073 0.86425 0.78180 0.79265 0.83494 1.19584 1.21117 1.20982 1.22357 1.02353 0.91416 0.95456 1.22461 0.77278 0.90558 0.83418 1.90556 1.28722 1.81601 1.27837 1.21016 1.06049 0.93465 1.00314 1.21309 0.91327 1.00756 0.89966 1.21191 1.04841 0.91019 1.02473 1.17564 0.95520 0.86907 0.86582 1.91551 1.88619 1.67026 1.63467 1.20993 1.04941 1.01687 0.95234 1.17535 0.90871 0.91295 0.83900 1.91629 1.74542 1.90506 1.51902 0.97406 0.90500 0.92214 0.98892 0.95075 0.92972 0.92292 0.87768 0.82620 0.83293 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.03 60.07 0.54 1.19 16 2 N -0.53 -11.56 4.49 -245.82 -1.10 -12.67 16 3 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 4 C -0.51 -14.24 8.46 -34.44 -0.29 -14.53 16 5 H 0.07 1.86 7.12 -52.49 -0.37 1.49 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.01 0.22 4.05 -4.97 -0.02 0.20 16 13 C 0.39 6.19 6.83 -30.84 -0.21 5.98 16 14 O -0.42 -8.08 13.29 5.54 0.07 -8.01 16 15 C -0.21 -2.54 5.88 -105.01 -0.62 -3.16 16 16 C -0.02 -0.14 9.46 -39.13 -0.37 -0.51 16 17 C -0.18 -1.38 10.00 -39.58 -0.40 -1.78 16 18 C 0.15 1.37 7.31 -39.25 -0.29 1.08 16 19 F -0.13 -1.16 17.26 2.25 0.04 -1.12 16 20 C -0.21 -2.01 9.99 -39.51 -0.39 -2.40 16 21 C 0.18 2.25 7.29 -38.88 -0.28 1.97 16 22 F -0.11 -1.57 15.55 2.25 0.04 -1.53 16 23 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 24 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 25 H 0.06 1.18 5.88 -51.93 -0.31 0.87 16 26 H -0.01 -0.18 8.12 -51.92 -0.42 -0.60 16 27 H 0.03 0.83 7.93 -51.93 -0.41 0.41 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.10 1.56 7.87 -51.93 -0.41 1.15 16 31 H 0.16 1.10 7.04 -52.49 -0.37 0.73 16 32 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 294.57 15.07 4.44 4.44 Total: -1.00 -32.04 294.57 -6.71 -38.75 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -3.46 Total: -5.29 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.45 Total: -5.63 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.37 Total: -38.28 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.01 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.07 Total: -2.65 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.04 -6.71 -38.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.401 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds