Wall clock time and date at job start Mon Mar 30 2020 04:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99818 * 2 1 4 4 C 1.50692 * 109.47524 * 293.95687 * 3 2 1 5 5 H 1.08002 * 120.00301 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00141 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00143 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99898 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47381 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46930 * 120.00217 * 8 6 4 11 11 H 1.48496 * 109.47525 * 240.00250 * 8 6 4 12 12 C 1.46901 * 110.99924 * 123.95566 * 2 1 3 13 13 C 1.50701 * 109.47142 * 66.04960 * 12 2 1 14 14 O 1.21300 * 119.99798 * 359.97438 * 13 12 2 15 15 C 1.46827 * 119.99770 * 179.97438 * 13 12 2 16 16 C 1.40037 * 120.17137 * 359.72334 * 15 13 12 17 17 C 1.37631 * 119.87276 * 180.22775 * 16 15 13 18 18 C 1.38838 * 120.22519 * 0.07105 * 17 16 15 19 19 F 1.35102 * 119.82223 * 179.97438 * 18 17 16 20 20 C 1.38526 * 120.34694 * 359.94860 * 18 17 16 21 21 C 1.38129 * 120.12068 * 0.02562 * 20 18 17 22 22 F 1.35096 * 120.11536 * 179.97438 * 21 20 18 23 23 H 1.08996 * 109.46798 * 296.03977 * 1 2 3 24 24 H 1.08999 * 109.47101 * 56.04801 * 1 2 3 25 25 H 1.09007 * 109.46554 * 176.04539 * 1 2 3 26 26 H 1.09009 * 109.46942 * 53.95840 * 3 2 1 27 27 H 1.08999 * 109.47369 * 173.95241 * 3 2 1 28 28 H 0.96994 * 120.00084 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47263 * 306.04813 * 12 2 1 30 30 H 1.09001 * 109.46774 * 186.04511 * 12 2 1 31 31 H 1.07994 * 120.05690 * 0.25123 * 16 15 13 32 32 H 1.07999 * 119.88372 * 180.02562 * 17 16 15 33 33 H 1.07996 * 119.93920 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2983 5 1 1.0739 1.5116 -2.0484 6 6 2.0267 3.3496 -1.5283 7 7 2.7119 4.0020 -0.6148 8 14 1.5829 4.1870 -3.1380 9 1 0.8156 3.2444 -3.9913 10 1 0.7549 5.3878 -2.8594 11 1 2.8247 4.5946 -3.8429 12 6 1.9955 -0.7660 1.1376 13 6 1.6370 -2.2205 0.9728 14 8 1.0047 -2.5831 0.0032 15 6 2.0532 -3.1984 1.9858 16 6 2.7882 -2.7845 3.1035 17 6 3.1791 -3.7072 4.0470 18 6 2.8485 -5.0468 3.8934 19 9 3.2369 -5.9457 4.8242 20 6 2.1220 -5.4665 2.7911 21 6 1.7219 -4.5526 1.8358 22 9 1.0139 -4.9621 0.7605 23 1 -0.3633 0.4511 0.9233 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0709 26 1 1.5611 1.9273 0.8310 27 1 3.0797 1.3445 0.1083 28 1 2.9865 4.9180 -0.7767 29 1 1.5612 -0.3874 2.0627 30 1 3.0798 -0.6611 1.1756 31 1 3.0474 -1.7432 3.2251 32 1 3.7457 -3.3881 4.9093 33 1 1.8681 -6.5101 2.6784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050132693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:11 Heat of formation + Delta-G solvation = -108.417161 kcal Electronic energy + Delta-G solvation = -19704.745729 eV Core-core repulsion = 16173.275546 eV Total energy + Delta-G solvation = -3531.470184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.15287 -50.12855 -41.02698 -39.24673 -37.61006 -34.63406 -32.78792 -31.73524 -29.91078 -28.71871 -26.32506 -24.87653 -24.02680 -22.48460 -20.91081 -19.34898 -18.59446 -18.22659 -17.88256 -17.21965 -16.82863 -16.70802 -16.50830 -16.27316 -15.99574 -15.81923 -15.53540 -15.17223 -14.91225 -14.43124 -14.07476 -13.69432 -13.56968 -13.30916 -13.03913 -12.78260 -12.65226 -12.59917 -12.52740 -12.33550 -11.98231 -11.42220 -10.62649 -10.58484 -10.24955 -9.91255 -9.01775 -8.20490 -6.28785 -0.71563 -0.08135 1.20763 1.40891 1.42268 1.55558 2.35270 2.40173 2.61266 2.75638 3.12485 3.20364 3.42016 3.46319 3.79436 3.97386 4.09384 4.33892 4.45404 4.53468 4.61863 4.67160 4.72143 4.82281 4.91931 4.96340 5.10715 5.17567 5.29059 5.58426 5.65548 6.03795 6.26317 6.45552 6.66371 6.86187 7.40393 8.90357 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.039084 B = 0.003724 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.224700 B = 7517.909720 C = 8062.505126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.548 5.548 3 C 0.208 3.792 4 C -0.527 4.527 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.009 3.991 13 C 0.396 3.604 14 O -0.463 6.463 15 C -0.223 4.223 16 C -0.004 4.004 17 C -0.160 4.160 18 C 0.160 3.840 19 F -0.125 7.125 20 C -0.204 4.204 21 C 0.162 3.838 22 F -0.129 7.129 23 H 0.018 0.982 24 H 0.054 0.946 25 H 0.068 0.932 26 H -0.025 1.025 27 H 0.017 0.983 28 H 0.265 0.735 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -16.787 13.302 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.273 5.273 3 C 0.082 3.918 4 C -0.565 4.565 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.202 1.202 12 C -0.120 4.120 13 C 0.274 3.726 14 O -0.339 6.339 15 C -0.226 4.226 16 C -0.022 4.022 17 C -0.178 4.178 18 C 0.141 3.859 19 F -0.103 7.103 20 C -0.223 4.223 21 C 0.143 3.857 22 F -0.108 7.108 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.086 0.914 26 H -0.007 1.007 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.139 0.861 31 H 0.197 0.803 32 H 0.201 0.799 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.445 -17.092 12.376 21.152 hybrid contribution -0.547 0.700 -0.247 0.922 sum 0.898 -16.392 12.129 20.411 Atomic orbital electron populations 1.22251 0.87737 1.01018 0.99839 1.61791 1.08334 1.15899 1.41255 1.19454 0.94309 0.82821 0.95224 1.21482 1.34906 0.97557 1.02602 0.92747 1.25786 0.95025 0.97868 1.00435 1.70045 1.39189 1.11909 1.35805 0.85410 0.78133 0.78183 0.79350 1.19487 1.20194 1.20196 1.22532 1.03378 0.91433 0.94617 1.22605 0.75927 0.90702 0.83387 1.90543 1.31256 1.82131 1.29935 1.20750 1.08288 0.92675 1.00851 1.21553 0.89861 1.02175 0.88640 1.21528 1.03554 0.90042 1.02708 1.17674 0.94755 0.87440 0.86078 1.91570 1.88442 1.67096 1.63228 1.21097 1.04442 1.02079 0.94713 1.17790 0.91851 0.91887 0.84217 1.91572 1.75317 1.90721 1.53149 0.96325 0.92740 0.91371 1.00728 0.96475 0.92575 0.89632 0.86058 0.80338 0.79914 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 9.03 127.69 1.15 2.82 16 2 N -0.55 -24.21 4.49 -931.65 -4.18 -28.40 16 3 C 0.21 10.76 4.72 85.55 0.40 11.16 16 4 C -0.53 -30.17 8.46 25.60 0.22 -29.95 16 5 H 0.05 3.17 7.12 -2.91 -0.02 3.15 16 6 C 0.01 0.41 5.46 84.66 0.46 0.87 16 7 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.01 0.28 4.05 85.56 0.35 0.63 16 13 C 0.40 12.49 6.83 27.93 0.19 12.68 16 14 O -0.46 -18.47 13.29 -3.09 -0.04 -18.51 16 15 C -0.22 -5.22 5.88 -20.11 -0.12 -5.34 16 16 C 0.00 -0.06 9.46 22.56 0.21 0.15 16 17 C -0.16 -1.85 10.00 22.27 0.22 -1.63 16 18 C 0.16 2.33 7.31 22.48 0.16 2.50 16 19 F -0.13 -1.83 17.26 44.97 0.78 -1.06 16 20 C -0.20 -3.53 9.99 22.31 0.22 -3.31 16 21 C 0.16 3.87 7.29 22.72 0.17 4.04 16 22 F -0.13 -3.86 15.55 44.97 0.70 -3.16 16 23 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 2.48 6.76 -2.39 -0.02 2.46 16 25 H 0.07 2.74 5.88 -2.38 -0.01 2.73 16 26 H -0.02 -1.36 8.12 -2.38 -0.02 -1.38 16 27 H 0.02 0.92 7.93 -2.39 -0.02 0.91 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.09 2.33 8.07 -2.39 -0.02 2.31 16 30 H 0.12 3.46 7.87 -2.39 -0.02 3.44 16 31 H 0.18 1.81 7.04 -2.91 -0.02 1.79 16 32 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -70.33 294.57 4.34 -65.99 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: 1.14 Total: -1.85 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 3.64 Total: -5.38 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.90 Total: -82.64 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.04 Total: -18.51 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 1.48 Total: -4.22 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.33 4.34 -65.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.427 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds