Wall clock time and date at job start Mon Mar 30 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47489 * 2 1 4 4 C 1.46498 * 120.00379 * 265.09678 * 3 2 1 5 5 C 1.50696 * 109.47214 * 262.14905 * 4 3 2 6 6 H 1.07995 * 120.00136 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99718 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99803 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00363 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47354 * 89.99660 * 9 7 5 11 11 H 1.48497 * 109.47279 * 210.00132 * 9 7 5 12 12 H 1.48503 * 109.47042 * 329.99833 * 9 7 5 13 13 C 1.34777 * 120.00043 * 85.09733 * 3 2 1 14 14 O 1.21751 * 120.00235 * 2.25193 * 13 3 2 15 15 C 1.46227 * 119.99976 * 182.25436 * 13 3 2 16 16 S 1.76185 * 126.11256 * 352.00462 * 15 13 3 17 17 C 1.70919 * 90.42454 * 180.02562 * 16 15 13 18 18 N 1.37840 * 124.74958 * 179.97438 * 17 16 15 19 19 N 1.30230 * 110.50277 * 359.66133 * 17 16 15 20 20 C 1.30882 * 117.26195 * 0.26975 * 19 17 16 21 21 C 1.50703 * 122.98077 * 179.97438 * 20 19 17 22 22 H 1.09002 * 109.47024 * 59.99700 * 1 2 3 23 23 H 1.08998 * 109.47552 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47080 * 300.00292 * 1 2 3 25 25 H 1.09001 * 109.47080 * 239.99708 * 2 1 3 26 26 H 1.09002 * 109.47024 * 120.00300 * 2 1 3 27 27 H 1.09006 * 109.46741 * 22.14960 * 4 3 2 28 28 H 1.09000 * 109.47465 * 142.14270 * 4 3 2 29 29 H 0.97000 * 119.99977 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00282 * 179.71881 * 18 17 16 31 31 H 0.97000 * 119.99472 * 359.44208 * 18 17 16 32 32 H 1.09001 * 109.47243 * 90.02803 * 21 20 19 33 33 H 1.09007 * 109.46617 * 210.02351 * 21 20 19 34 34 H 1.08997 * 109.47097 * 330.01835 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3648 2.0357 -1.2640 5 6 3.8539 1.9538 -1.4805 6 1 4.4797 1.4637 -0.7494 7 6 4.4173 2.5047 -2.6119 8 7 5.7169 2.4328 -2.8011 9 14 3.3351 3.3531 -3.8761 10 1 3.2136 4.7937 -3.5368 11 1 3.9433 3.2114 -5.2234 12 1 1.9877 2.7286 -3.8732 13 6 2.1490 2.0498 1.1629 14 8 1.9003 1.4928 2.2166 15 6 2.5894 3.4441 1.1591 16 16 3.1778 4.3434 -0.2370 17 6 3.4035 5.7306 0.7357 18 7 3.8849 6.9394 0.2807 19 7 3.0507 5.4876 1.9656 20 6 2.6116 4.2849 2.2369 21 6 2.1703 3.8642 3.6150 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.8503 1.5360 -2.0849 28 1 2.0599 3.0815 -1.2272 29 1 6.1133 2.8207 -3.5969 30 1 3.9819 7.6847 0.8939 31 1 4.1304 7.0435 -0.6519 32 1 1.1051 4.0638 3.7322 33 1 2.3568 2.7983 3.7466 34 1 2.7298 4.4259 4.3630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055174232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:32 Heat of formation + Delta-G solvation = 11.610849 kcal Electronic energy + Delta-G solvation = -19104.327357 eV Core-core repulsion = 16164.195116 eV Total energy + Delta-G solvation = -2940.132241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.48628 -38.53887 -35.33344 -34.41442 -32.95841 -31.08186 -29.84740 -28.06337 -27.11743 -23.25140 -22.92269 -22.79013 -20.20873 -18.14386 -17.83543 -17.27121 -16.47912 -16.08328 -15.04144 -14.91433 -14.67380 -14.28985 -13.77439 -13.39941 -13.15001 -13.00583 -12.63296 -12.44283 -12.23305 -12.10108 -11.76890 -11.59520 -11.09624 -10.92350 -10.49732 -10.43449 -10.30742 -10.08799 -9.82726 -9.12973 -9.08716 -8.65329 -8.30820 -7.90700 -7.08854 -6.41076 -4.36810 1.31154 2.00885 2.57512 3.00817 3.11237 3.14078 3.29762 3.79096 3.94006 4.03844 4.07503 4.89547 5.26433 5.37719 5.68596 5.73062 5.78555 5.83551 6.14452 6.15572 6.21764 6.28788 6.37995 6.42276 6.48997 6.58784 6.86497 7.16360 7.27864 7.32022 7.62832 8.02143 8.24731 8.58924 8.66726 8.94647 9.14553 10.70047 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.011761 C = 0.007214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.784873 B = 2380.198713 C = 3880.270764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 N -0.595 5.595 4 C 0.201 3.799 5 C -0.530 4.530 6 H 0.087 0.913 7 C 0.088 3.912 8 N -0.872 5.872 9 Si 0.848 3.152 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.259 1.259 13 C 0.608 3.392 14 O -0.562 6.562 15 C -0.354 4.354 16 S 0.283 5.717 17 C 0.229 3.771 18 N -0.819 5.819 19 N -0.573 5.573 20 C 0.177 3.823 21 C -0.083 4.083 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.270 0.730 30 H 0.399 0.601 31 H 0.411 0.589 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 4.166 1.651 8.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.003 4.003 3 N -0.325 5.325 4 C 0.076 3.924 5 C -0.572 4.572 6 H 0.105 0.895 7 C -0.119 4.119 8 N -0.508 5.508 9 Si 0.673 3.327 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.183 1.183 13 C 0.398 3.602 14 O -0.444 6.444 15 C -0.480 4.480 16 S 0.543 5.457 17 C -0.136 4.136 18 N -0.368 5.368 19 N -0.299 5.299 20 C 0.034 3.966 21 C -0.142 4.142 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.241 0.759 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.401 4.240 1.320 7.790 hybrid contribution -0.297 0.752 -0.284 0.857 sum -6.697 4.993 1.036 8.418 Atomic orbital electron populations 1.22144 0.96788 1.01426 1.02016 1.21254 0.93319 0.82826 1.02916 1.47705 1.64178 1.13609 1.07005 1.20024 0.97767 0.91897 0.82670 1.21443 0.90181 1.37909 1.07711 0.89493 1.24821 0.94826 0.95118 0.97095 1.69871 1.09978 1.43248 1.27727 0.87216 0.81921 0.81253 0.82309 1.18898 1.20125 1.18284 1.16580 0.76301 0.83982 0.83382 1.90650 1.54006 1.69063 1.30723 1.25024 1.24377 1.00992 0.97646 1.86202 1.58032 0.95175 1.06305 1.25452 0.96210 0.95351 0.96619 1.41333 1.72579 1.09756 1.13172 1.66009 1.24014 1.21796 1.18060 1.20205 0.94003 0.86254 0.96094 1.20545 1.00500 1.03560 0.89643 0.92903 0.92167 0.92421 0.90289 0.90635 0.93429 0.95338 0.91950 0.77068 0.75885 0.91295 0.88277 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.20 37.15 0.38 -2.08 16 2 C 0.12 2.12 6.06 -4.05 -0.02 2.09 16 3 N -0.59 -12.47 2.49 -176.77 -0.44 -12.91 16 4 C 0.20 4.36 3.79 -5.20 -0.02 4.34 16 5 C -0.53 -13.19 7.54 -34.44 -0.26 -13.45 16 6 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 7 C 0.09 2.20 5.10 -17.82 -0.09 2.11 16 8 N -0.87 -23.54 13.96 55.43 0.77 -22.76 16 9 Si 0.85 18.02 26.82 -169.99 -4.56 13.47 16 10 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.26 -5.25 6.54 56.52 0.37 -4.88 16 13 C 0.61 13.48 7.50 -13.05 -0.10 13.39 16 14 O -0.56 -12.80 13.94 5.14 0.07 -12.73 16 15 C -0.35 -7.69 6.25 -36.93 -0.23 -7.92 16 16 S 0.28 5.82 15.51 -107.50 -1.67 4.15 16 17 C 0.23 4.29 8.53 -87.98 -0.75 3.54 16 18 N -0.82 -11.56 9.04 29.69 0.27 -11.29 16 19 N -0.57 -11.50 10.54 -10.94 -0.12 -11.61 16 20 C 0.18 3.64 6.83 -83.55 -0.57 3.07 16 21 C -0.08 -1.47 9.81 36.01 0.35 -1.12 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 26 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 27 H 0.05 0.99 7.07 -51.93 -0.37 0.63 16 28 H 0.03 0.64 3.95 -22.83 -0.09 0.55 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.40 4.77 8.95 -40.82 -0.37 4.41 16 31 H 0.41 4.93 8.95 -40.82 -0.37 4.56 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.10 1.86 5.88 -51.93 -0.31 1.55 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 292.13 15.07 4.40 4.40 Total: -1.00 -29.46 292.13 -6.58 -36.04 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.01 Total: 9.29 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.31 Total: 3.97 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.49 Total: -58.58 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.07 Total: -12.73 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -4.56 Total: 13.47 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.67 Total: 4.15 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.46 -6.58 -36.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055174232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.654 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds