Wall clock time and date at job start Mon Mar 30 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47489 * 2 1 4 4 C 1.46498 * 120.00379 * 265.09678 * 3 2 1 5 5 C 1.50696 * 109.47214 * 262.14905 * 4 3 2 6 6 H 1.07995 * 120.00136 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99718 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99803 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00363 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47354 * 89.99660 * 9 7 5 11 11 H 1.48497 * 109.47279 * 210.00132 * 9 7 5 12 12 H 1.48503 * 109.47042 * 329.99833 * 9 7 5 13 13 C 1.34777 * 120.00043 * 85.09733 * 3 2 1 14 14 O 1.21751 * 120.00235 * 2.25193 * 13 3 2 15 15 C 1.46227 * 119.99976 * 182.25436 * 13 3 2 16 16 S 1.76185 * 126.11256 * 352.00462 * 15 13 3 17 17 C 1.70919 * 90.42454 * 180.02562 * 16 15 13 18 18 N 1.37840 * 124.74958 * 179.97438 * 17 16 15 19 19 N 1.30230 * 110.50277 * 359.66133 * 17 16 15 20 20 C 1.30882 * 117.26195 * 0.26975 * 19 17 16 21 21 C 1.50703 * 122.98077 * 179.97438 * 20 19 17 22 22 H 1.09002 * 109.47024 * 59.99700 * 1 2 3 23 23 H 1.08998 * 109.47552 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47080 * 300.00292 * 1 2 3 25 25 H 1.09001 * 109.47080 * 239.99708 * 2 1 3 26 26 H 1.09002 * 109.47024 * 120.00300 * 2 1 3 27 27 H 1.09006 * 109.46741 * 22.14960 * 4 3 2 28 28 H 1.09000 * 109.47465 * 142.14270 * 4 3 2 29 29 H 0.97000 * 119.99977 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00282 * 179.71881 * 18 17 16 31 31 H 0.97000 * 119.99472 * 359.44208 * 18 17 16 32 32 H 1.09001 * 109.47243 * 90.02803 * 21 20 19 33 33 H 1.09007 * 109.46617 * 210.02351 * 21 20 19 34 34 H 1.08997 * 109.47097 * 330.01835 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3648 2.0357 -1.2640 5 6 3.8539 1.9538 -1.4805 6 1 4.4797 1.4637 -0.7494 7 6 4.4173 2.5047 -2.6119 8 7 5.7169 2.4328 -2.8011 9 14 3.3351 3.3531 -3.8761 10 1 3.2136 4.7937 -3.5368 11 1 3.9433 3.2114 -5.2234 12 1 1.9877 2.7286 -3.8732 13 6 2.1490 2.0498 1.1629 14 8 1.9003 1.4928 2.2166 15 6 2.5894 3.4441 1.1591 16 16 3.1778 4.3434 -0.2370 17 6 3.4035 5.7306 0.7357 18 7 3.8849 6.9394 0.2807 19 7 3.0507 5.4876 1.9656 20 6 2.6116 4.2849 2.2369 21 6 2.1703 3.8642 3.6150 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.8503 1.5360 -2.0849 28 1 2.0599 3.0815 -1.2272 29 1 6.1133 2.8207 -3.5969 30 1 3.9819 7.6847 0.8939 31 1 4.1304 7.0435 -0.6519 32 1 1.1051 4.0638 3.7322 33 1 2.3568 2.7983 3.7466 34 1 2.7298 4.4259 4.3630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055174232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:32 Heat of formation + Delta-G solvation = -9.079285 kcal Electronic energy + Delta-G solvation = -19105.224548 eV Core-core repulsion = 16164.195116 eV Total energy + Delta-G solvation = -2941.029432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08632 -40.11924 -36.99423 -35.82674 -34.76856 -32.59157 -31.29334 -29.81485 -28.63902 -24.72286 -24.60157 -24.37514 -21.74566 -19.70912 -19.36639 -19.14321 -17.99705 -17.65630 -16.56810 -16.48414 -16.24821 -15.90669 -15.36035 -14.88287 -14.72991 -14.61525 -14.32269 -13.95412 -13.63122 -13.51487 -13.22851 -13.11987 -12.62804 -12.50227 -12.09686 -11.91436 -11.85205 -11.74039 -11.50229 -10.90942 -10.77968 -10.24385 -9.94535 -9.55392 -8.59646 -8.31923 -6.33549 -0.26013 0.44456 0.99026 1.36477 1.42368 1.48550 1.70779 2.24375 2.30792 2.41060 2.56588 3.01773 3.83870 3.85968 4.26296 4.34580 4.39131 4.45902 4.61000 4.73875 4.79497 4.87888 4.92113 4.99183 5.06719 5.29145 5.34930 5.43710 5.71392 6.00216 6.15444 6.40184 6.53958 6.65084 7.11174 7.19230 7.31564 8.83361 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.011761 C = 0.007214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.784873 B = 2380.198713 C = 3880.270764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.207 3.793 5 C -0.530 4.530 6 H 0.034 0.966 7 C 0.047 3.953 8 N -0.923 5.923 9 Si 0.898 3.102 10 H -0.240 1.240 11 H -0.278 1.278 12 H -0.239 1.239 13 C 0.599 3.401 14 O -0.578 6.578 15 C -0.386 4.386 16 S 0.255 5.745 17 C 0.245 3.755 18 N -0.793 5.793 19 N -0.584 5.584 20 C 0.179 3.821 21 C -0.079 4.079 22 H 0.059 0.941 23 H 0.090 0.910 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.272 0.728 30 H 0.415 0.585 31 H 0.424 0.576 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 5.767 1.124 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 N -0.329 5.329 4 C 0.082 3.918 5 C -0.572 4.572 6 H 0.052 0.948 7 C -0.155 4.155 8 N -0.561 5.561 9 Si 0.719 3.281 10 H -0.164 1.164 11 H -0.204 1.204 12 H -0.162 1.162 13 C 0.390 3.610 14 O -0.462 6.462 15 C -0.513 4.513 16 S 0.512 5.488 17 C -0.122 4.122 18 N -0.344 5.344 19 N -0.311 5.311 20 C 0.036 3.964 21 C -0.138 4.138 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.248 0.752 31 H 0.257 0.743 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.017 5.848 0.776 9.954 hybrid contribution 0.286 0.344 0.003 0.447 sum -7.731 6.192 0.779 9.936 Atomic orbital electron populations 1.22039 0.94178 1.03295 1.01605 1.21492 0.95444 0.81306 1.02834 1.47834 1.63970 1.14652 1.06477 1.19916 0.95603 0.92883 0.83394 1.21306 0.91392 1.37702 1.06777 0.94783 1.25490 0.95765 0.95426 0.98825 1.70012 1.12176 1.45133 1.28760 0.86401 0.80873 0.81617 0.79213 1.16403 1.20368 1.16198 1.16780 0.76290 0.84425 0.83539 1.90622 1.54946 1.69554 1.31086 1.25076 1.26490 1.01270 0.98463 1.85974 1.59652 0.96345 1.06810 1.25476 0.94931 0.96067 0.95757 1.41383 1.70204 1.08507 1.14317 1.66121 1.25174 1.21572 1.18269 1.20702 0.92593 0.86207 0.96905 1.20559 1.01788 1.02790 0.88647 0.92212 0.89166 0.93791 0.89519 0.91602 0.91929 0.94299 0.91832 0.75240 0.74319 0.89561 0.89718 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 10.20 71.98 0.73 -3.57 16 2 C 0.11 3.90 6.06 86.38 0.52 4.42 16 3 N -0.60 -25.23 2.49 -831.38 -2.07 -27.30 16 4 C 0.21 8.87 3.79 85.63 0.32 9.19 16 5 C -0.53 -26.96 7.54 25.60 0.19 -26.77 16 6 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 7 C 0.05 2.37 5.10 84.66 0.43 2.81 16 8 N -0.92 -50.97 13.96 21.45 0.30 -50.68 16 9 Si 0.90 35.75 26.82 68.60 1.84 37.59 16 10 H -0.24 -8.61 7.11 99.48 0.71 -7.90 16 11 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.24 -8.71 6.54 99.48 0.65 -8.06 16 13 C 0.60 26.89 7.50 86.32 0.65 27.54 16 14 O -0.58 -26.73 13.94 -4.51 -0.06 -26.79 16 15 C -0.39 -16.76 6.25 23.99 0.15 -16.62 16 16 S 0.25 10.24 15.51 -56.49 -0.88 9.36 16 17 C 0.25 8.68 8.53 179.43 1.53 10.21 16 18 N -0.79 -19.95 9.04 -59.97 -0.54 -20.50 16 19 N -0.58 -22.39 10.54 -188.52 -1.99 -24.37 16 20 C 0.18 7.18 6.83 42.34 0.29 7.47 16 21 C -0.08 -2.69 9.81 71.24 0.70 -1.99 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.09 2.85 8.03 -2.39 -0.02 2.83 16 26 H 0.07 2.41 7.54 -2.39 -0.02 2.39 16 27 H 0.06 2.50 7.07 -2.38 -0.02 2.48 16 28 H 0.04 1.66 3.95 -20.89 -0.08 1.58 16 29 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.42 8.45 8.95 -92.71 -0.83 7.62 16 31 H 0.42 8.78 8.95 -92.71 -0.83 7.95 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.08 3.16 5.88 -2.38 -0.01 3.15 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -64.72 292.13 1.49 -63.23 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.64 Total: 26.74 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.52 Total: 12.71 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -4.30 Total: -122.85 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.06 Total: -26.79 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 1.84 Total: 37.59 kcal Atomic # 16 Polarization: 10.24 SS G_CDS: -0.88 Total: 9.36 kcal Total: -64.72 1.49 -63.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055174232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.154 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds