Wall clock time and date at job start Mon Mar 30 2020 04:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46993 * 2 1 4 4 H 1.09004 * 109.46776 * 54.99914 * 3 2 1 5 5 C 1.50701 * 109.47318 * 174.99930 * 3 2 1 6 6 H 1.07992 * 119.99803 * 119.99797 * 5 3 2 7 7 C 1.37879 * 119.99781 * 300.00184 * 5 3 2 8 8 N 1.31515 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46893 * 60.00192 * 9 7 5 11 11 H 1.48499 * 109.47235 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47336 * 300.00278 * 9 7 5 13 13 N 1.46495 * 109.46895 * 295.00170 * 3 2 1 14 14 C 1.34778 * 120.00338 * 85.00132 * 13 3 2 15 15 O 1.21276 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00090 * 180.02562 * 14 13 3 17 17 C 1.50697 * 109.47155 * 179.97438 * 16 14 13 18 18 C 1.33331 * 122.70960 * 124.99476 * 17 16 14 19 19 S 1.76173 * 108.09210 * 179.74725 * 18 17 16 20 20 C 1.70963 * 90.35554 * 0.30248 * 19 18 17 21 21 N 1.38615 * 124.94621 * 179.97438 * 20 19 18 22 22 N 1.29682 * 110.10566 * 359.69192 * 20 19 18 23 23 H 1.09005 * 109.46762 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47485 * 299.99852 * 1 2 3 25 25 H 1.08992 * 109.47242 * 60.00354 * 1 2 3 26 26 H 1.09004 * 109.47485 * 240.00148 * 2 1 3 27 27 H 1.09006 * 109.47361 * 119.99669 * 2 1 3 28 28 H 0.97006 * 119.99575 * 179.97438 * 8 7 5 29 29 H 0.97004 * 119.99758 * 264.99961 * 13 3 2 30 30 H 1.09000 * 109.47413 * 59.99317 * 16 14 13 31 31 H 1.09002 * 109.46590 * 299.99796 * 16 14 13 32 32 H 1.07996 * 125.95102 * 359.97438 * 18 17 16 33 33 H 0.96996 * 120.00232 * 179.69779 * 21 20 19 34 34 H 0.97004 * 119.99644 * 359.42366 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1733 9 14 6.0049 0.8802 1.3812 10 1 6.5003 2.2802 1.3809 11 1 6.3978 0.2170 2.6504 12 1 6.5967 0.1456 0.2343 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3397 2.6319 -0.4344 16 6 0.0361 3.3376 -2.6549 17 6 -1.3618 3.8850 -2.5235 18 6 -1.6591 5.1643 -2.7536 19 16 -3.3887 5.3788 -2.4960 20 6 -3.5448 3.7245 -2.0938 21 7 -4.7320 3.1015 -1.7421 22 7 -2.3917 3.1361 -2.1715 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0609 2.9500 29 1 2.2718 2.1231 -1.9978 30 1 0.0672 2.6129 -3.4685 31 1 0.7275 4.1529 -2.8679 32 1 -0.9619 5.9339 -3.0501 33 1 -4.7390 2.1548 -1.5311 34 1 -5.5552 3.6132 -1.7031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055273367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:10 Heat of formation + Delta-G solvation = 4.256392 kcal Electronic energy + Delta-G solvation = -18330.464045 eV Core-core repulsion = 15390.012891 eV Total energy + Delta-G solvation = -2940.451154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87276 -38.44686 -35.13430 -34.58572 -32.30789 -31.27674 -30.22622 -27.88052 -26.58303 -23.72172 -22.84443 -20.60449 -19.90761 -19.20309 -18.17484 -16.93803 -16.26848 -16.10782 -15.57557 -15.21595 -14.61948 -14.38031 -14.23029 -13.60668 -12.96614 -12.83020 -12.57445 -12.42858 -11.61931 -11.39938 -11.23103 -11.11350 -10.92508 -10.76687 -10.65898 -10.26282 -10.06014 -9.52420 -9.38006 -9.04978 -8.97552 -8.80374 -8.42564 -7.77991 -7.67453 -6.06555 -4.15802 1.13608 1.26191 1.86334 3.11969 3.28600 3.33864 3.35068 3.45734 3.60841 4.26451 4.50144 4.77319 5.24166 5.30634 5.50762 5.66290 5.74964 5.91593 6.24935 6.49752 6.59002 6.78812 6.89467 7.16455 7.25158 7.30997 7.48627 7.59185 7.69657 7.83569 7.99120 8.20242 8.26420 8.79335 8.86834 9.30201 9.52498 10.98644 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037392 B = 0.004260 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.634363 B = 6570.534181 C = 7010.530416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.714 5.714 14 C 0.505 3.495 15 O -0.529 6.529 16 C -0.074 4.074 17 C 0.146 3.854 18 C -0.299 4.299 19 S 0.066 5.934 20 C 0.321 3.679 21 N -0.822 5.822 22 N -0.515 5.515 23 H 0.019 0.981 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.096 0.904 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.412 0.588 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 7.537 -11.137 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.362 5.362 14 C 0.289 3.711 15 O -0.406 6.406 16 C -0.117 4.117 17 C 0.014 3.986 18 C -0.440 4.440 19 S 0.312 5.688 20 C -0.053 4.053 21 N -0.375 5.375 22 N -0.239 5.239 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.191 0.809 33 H 0.244 0.756 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.301 7.682 -10.199 18.438 hybrid contribution 1.807 -0.545 -0.156 1.894 sum -11.494 7.137 -10.354 17.037 Atomic orbital electron populations 1.21819 0.98178 0.97777 1.01500 1.21926 0.92717 0.99886 1.02027 1.18715 0.93929 0.89116 0.81152 0.93538 1.21223 0.90869 1.38899 1.06185 0.92180 1.24887 0.98482 0.94895 0.95432 1.69898 1.35131 1.37656 1.09338 0.86535 0.85039 0.78258 0.77397 1.20232 1.21195 1.20191 1.46448 1.14664 1.56675 1.18462 1.19990 0.82726 0.79689 0.88741 1.90694 1.50882 1.58890 1.40143 1.20366 0.90851 1.01544 0.98983 1.19224 0.94114 0.88863 0.96351 1.26100 0.96586 1.00809 1.20459 1.83661 1.06919 1.09006 1.69192 1.23492 0.90598 0.93090 0.98118 1.41477 1.04904 1.13426 1.77681 1.66138 0.96801 1.37210 1.23742 0.96218 0.93434 0.93738 0.95181 0.88537 0.92598 0.78159 0.87886 0.87848 0.80948 0.75638 0.75903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 7.00 2.24 -69.08 -0.15 6.84 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.14 11.29 55.43 0.63 -24.51 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 13 N -0.71 -14.94 5.02 -54.93 -0.28 -15.22 16 14 C 0.50 10.25 6.37 -10.98 -0.07 10.18 16 15 O -0.53 -12.87 12.58 5.56 0.07 -12.80 16 16 C -0.07 -1.12 6.19 -29.04 -0.18 -1.29 16 17 C 0.15 2.33 5.63 -84.18 -0.47 1.86 16 18 C -0.30 -3.97 11.04 29.02 0.32 -3.65 16 19 S 0.07 0.77 23.22 -107.50 -2.50 -1.73 16 20 C 0.32 4.47 8.58 -87.68 -0.75 3.72 16 21 N -0.82 -8.25 9.08 29.77 0.27 -7.98 16 22 N -0.51 -8.88 9.74 -11.36 -0.11 -8.99 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 25 H 0.04 1.04 5.64 -51.93 -0.29 0.74 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 30 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 32 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.41 4.00 8.95 -40.82 -0.37 3.63 16 34 H 0.41 2.70 8.95 -40.82 -0.37 2.33 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -33.47 299.85 -8.08 -41.56 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.13 Total: 10.77 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.53 Total: -1.39 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.51 Total: -56.70 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.50 Total: -1.73 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.47 -8.08 -41.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055273367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.814 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds