Wall clock time and date at job start Mon Mar 30 2020 04:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46993 * 2 1 4 4 H 1.09004 * 109.46776 * 54.99914 * 3 2 1 5 5 C 1.50701 * 109.47318 * 174.99930 * 3 2 1 6 6 H 1.07992 * 119.99803 * 119.99797 * 5 3 2 7 7 C 1.37879 * 119.99781 * 300.00184 * 5 3 2 8 8 N 1.31515 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46893 * 60.00192 * 9 7 5 11 11 H 1.48499 * 109.47235 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47336 * 300.00278 * 9 7 5 13 13 N 1.46495 * 109.46895 * 295.00170 * 3 2 1 14 14 C 1.34778 * 120.00338 * 85.00132 * 13 3 2 15 15 O 1.21276 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00090 * 180.02562 * 14 13 3 17 17 C 1.50697 * 109.47155 * 179.97438 * 16 14 13 18 18 C 1.33331 * 122.70960 * 124.99476 * 17 16 14 19 19 S 1.76173 * 108.09210 * 179.74725 * 18 17 16 20 20 C 1.70963 * 90.35554 * 0.30248 * 19 18 17 21 21 N 1.38615 * 124.94621 * 179.97438 * 20 19 18 22 22 N 1.29682 * 110.10566 * 359.69192 * 20 19 18 23 23 H 1.09005 * 109.46762 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47485 * 299.99852 * 1 2 3 25 25 H 1.08992 * 109.47242 * 60.00354 * 1 2 3 26 26 H 1.09004 * 109.47485 * 240.00148 * 2 1 3 27 27 H 1.09006 * 109.47361 * 119.99669 * 2 1 3 28 28 H 0.97006 * 119.99575 * 179.97438 * 8 7 5 29 29 H 0.97004 * 119.99758 * 264.99961 * 13 3 2 30 30 H 1.09000 * 109.47413 * 59.99317 * 16 14 13 31 31 H 1.09002 * 109.46590 * 299.99796 * 16 14 13 32 32 H 1.07996 * 125.95102 * 359.97438 * 18 17 16 33 33 H 0.96996 * 120.00232 * 179.69779 * 21 20 19 34 34 H 0.97004 * 119.99644 * 359.42366 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1733 9 14 6.0049 0.8802 1.3812 10 1 6.5003 2.2802 1.3809 11 1 6.3978 0.2170 2.6504 12 1 6.5967 0.1456 0.2343 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3397 2.6319 -0.4344 16 6 0.0361 3.3376 -2.6549 17 6 -1.3618 3.8850 -2.5235 18 6 -1.6591 5.1643 -2.7536 19 16 -3.3887 5.3788 -2.4960 20 6 -3.5448 3.7245 -2.0938 21 7 -4.7320 3.1015 -1.7421 22 7 -2.3917 3.1361 -2.1715 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0609 2.9500 29 1 2.2718 2.1231 -1.9978 30 1 0.0672 2.6129 -3.4685 31 1 0.7275 4.1529 -2.8679 32 1 -0.9619 5.9339 -3.0501 33 1 -4.7390 2.1548 -1.5311 34 1 -5.5552 3.6132 -1.7031 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055273367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:09 Heat of formation + Delta-G solvation = -20.874763 kcal Electronic energy + Delta-G solvation = -18331.553814 eV Core-core repulsion = 15390.012891 eV Total energy + Delta-G solvation = -2941.540923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10286 -39.94551 -36.86857 -35.69660 -34.22869 -33.00652 -31.61093 -29.29749 -28.28674 -25.13132 -24.49074 -22.27104 -21.13497 -20.91650 -19.40138 -18.56273 -17.48751 -17.15022 -17.10333 -16.91602 -16.22066 -15.93903 -15.54426 -14.95405 -14.56515 -14.40532 -14.02992 -13.78799 -13.51359 -13.14635 -12.90391 -12.87073 -12.61965 -12.31664 -12.15826 -11.97403 -11.64793 -11.54633 -11.02279 -10.57426 -10.45655 -10.35846 -10.02802 -9.51058 -8.72236 -8.12853 -6.30411 0.13343 0.31010 0.87857 1.46240 1.48411 1.56020 2.00033 2.05637 2.41211 2.61930 2.88903 3.16355 3.72356 4.27620 4.32006 4.49865 4.53852 4.59808 4.64613 4.80526 4.87351 5.10108 5.20909 5.29374 5.48075 5.59709 5.70447 5.83760 6.00449 6.07985 6.21090 6.44497 6.79048 7.13281 7.26110 7.37803 7.75732 8.92325 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037392 B = 0.004260 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.634363 B = 6570.534181 C = 7010.530416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.008 1.008 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.710 5.710 14 C 0.500 3.500 15 O -0.574 6.574 16 C -0.062 4.062 17 C 0.111 3.889 18 C -0.300 4.300 19 S 0.122 5.878 20 C 0.298 3.702 21 N -0.810 5.810 22 N -0.565 5.565 23 H 0.040 0.960 24 H 0.019 0.981 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.264 0.736 29 H 0.404 0.596 30 H 0.124 0.876 31 H 0.139 0.861 32 H 0.200 0.800 33 H 0.412 0.588 34 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 8.680 -13.053 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.010 0.990 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.360 5.360 14 C 0.286 3.714 15 O -0.453 6.453 16 C -0.104 4.104 17 C -0.020 4.020 18 C -0.441 4.441 19 S 0.369 5.631 20 C -0.076 4.076 21 N -0.364 5.364 22 N -0.291 5.291 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.238 0.762 30 H 0.141 0.859 31 H 0.157 0.843 32 H 0.217 0.783 33 H 0.244 0.756 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.904 8.848 -12.162 19.817 hybrid contribution 1.554 -0.838 0.451 1.822 sum -11.350 8.009 -11.712 18.170 Atomic orbital electron populations 1.21615 0.97089 0.98619 1.00146 1.21778 0.93529 0.99504 1.01042 1.18262 0.93458 0.88902 0.81612 0.98989 1.21592 0.91495 1.38775 1.06663 0.90832 1.25800 1.03354 0.94422 0.95037 1.70066 1.37146 1.38499 1.09893 0.85420 0.79076 0.78469 0.77489 1.19568 1.21379 1.18843 1.46218 1.15704 1.56683 1.17440 1.20938 0.81543 0.78751 0.90165 1.90674 1.52001 1.60328 1.42339 1.20349 0.91524 1.02675 0.95827 1.19400 0.94222 0.89971 0.98412 1.26526 0.98287 1.00521 1.18740 1.83403 1.05355 1.06451 1.67910 1.23867 0.90815 0.94684 0.98185 1.41523 1.04626 1.13659 1.76602 1.66114 0.98114 1.39232 1.25605 0.94116 0.96198 0.93576 0.94132 0.91290 0.92732 0.76153 0.85859 0.84265 0.78280 0.75584 0.74068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.04 16 2 C -0.12 -6.13 5.45 30.59 0.17 -5.96 16 3 C 0.28 14.78 2.24 44.25 0.10 14.88 16 4 H -0.01 -0.49 7.58 -2.38 -0.02 -0.51 16 5 C -0.55 -29.26 8.73 25.60 0.22 -29.04 16 6 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -53.60 11.29 21.45 0.24 -53.36 16 9 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 N -0.71 -29.58 5.02 -446.10 -2.24 -31.82 16 14 C 0.50 20.18 6.37 87.66 0.56 20.74 16 15 O -0.57 -28.67 12.58 -3.02 -0.04 -28.70 16 16 C -0.06 -1.73 6.19 29.10 0.18 -1.55 16 17 C 0.11 3.39 5.63 41.40 0.23 3.63 16 18 C -0.30 -7.24 11.04 66.71 0.74 -6.50 16 19 S 0.12 2.58 23.22 -56.49 -1.31 1.26 16 20 C 0.30 8.02 8.58 179.32 1.54 9.55 16 21 N -0.81 -15.56 9.08 -59.73 -0.54 -16.10 16 22 N -0.56 -19.23 9.74 -189.86 -1.85 -21.08 16 23 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.02 1.02 7.85 -2.39 -0.02 1.00 16 25 H 0.05 2.18 5.64 -2.39 -0.01 2.17 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 3.94 5.95 -2.38 -0.01 3.93 16 28 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 29 H 0.40 13.88 8.54 -92.70 -0.79 13.08 16 30 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.14 2.83 8.03 -2.39 -0.02 2.81 16 32 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.41 7.88 8.95 -92.71 -0.83 7.05 16 34 H 0.43 5.01 8.95 -92.71 -0.83 4.18 16 Total: -1.00 -74.90 299.85 -0.21 -75.10 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -1.29 Total: 28.33 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.80 Total: 1.91 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -4.39 Total: -122.35 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.04 Total: -28.70 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.31 Total: 1.26 kcal Total: -74.90 -0.21 -75.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055273367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.228 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds