Wall clock time and date at job start Mon Mar 30 2020 04:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47074 * 2 1 4 4 H 1.08994 * 109.46956 * 175.39905 * 3 2 1 5 5 C 1.50697 * 109.47148 * 55.39377 * 3 2 1 6 6 H 1.07991 * 120.00832 * 239.99889 * 5 3 2 7 7 C 1.37884 * 119.99455 * 60.00389 * 5 3 2 8 8 N 1.31509 * 120.00349 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99758 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47245 * 59.99596 * 9 7 5 11 11 H 1.48501 * 109.47163 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47151 * 299.99932 * 9 7 5 13 13 S 1.81000 * 109.47026 * 295.39732 * 3 2 1 14 14 C 1.76200 * 100.00259 * 291.29398 * 13 3 2 15 15 N 1.30181 * 125.67443 * 354.76308 * 14 13 3 16 16 N 1.40175 * 108.03147 * 180.02562 * 15 14 13 17 17 H 0.97001 * 126.29420 * 179.97438 * 16 15 14 18 18 C 1.34902 * 107.40948 * 0.02562 * 16 15 14 19 19 O 1.21834 * 126.21003 * 179.97438 * 18 16 15 20 20 N 1.34794 * 107.57579 * 359.73360 * 18 16 15 21 21 C 1.46497 * 125.83341 * 180.28461 * 20 18 16 22 22 C 1.53007 * 117.49823 * 8.91523 * 21 20 18 23 23 C 1.53000 * 117.49718 * 300.25900 * 21 20 18 24 24 H 1.09002 * 109.46955 * 184.85829 * 1 2 3 25 25 H 1.09000 * 109.46919 * 304.85137 * 1 2 3 26 26 H 1.08996 * 109.47503 * 64.85199 * 1 2 3 27 27 H 1.09000 * 109.46915 * 240.00188 * 2 1 3 28 28 H 1.09000 * 109.47401 * 120.00218 * 2 1 3 29 29 H 0.97000 * 120.00213 * 179.97438 * 8 7 5 30 30 H 1.09004 * 115.55463 * 154.58325 * 21 20 18 31 31 H 1.09002 * 117.49402 * 0.02562 * 22 21 20 32 32 H 1.08998 * 117.49885 * 145.02333 * 22 21 20 33 33 H 1.09008 * 117.49428 * 214.97902 * 23 21 20 34 34 H 1.08995 * 117.50059 * 359.97201 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1268 1.4436 0.0824 5 6 1.4467 2.1851 1.1694 6 1 0.8360 3.0595 1.0003 7 6 1.6837 1.7480 2.4555 8 7 2.4270 0.6829 2.6616 9 14 0.9488 2.6688 3.9052 10 1 -0.5320 2.6679 3.7930 11 1 1.3494 2.0016 5.1699 12 1 1.4443 4.0687 3.9050 13 16 1.5510 2.2553 -1.5416 14 6 2.5624 1.3758 -2.6854 15 7 3.4639 0.4890 -2.3760 16 7 4.0439 0.0267 -3.5654 17 1 4.7458 -0.6386 -3.6412 18 6 3.4473 0.6779 -4.5851 19 8 3.6919 0.5370 -5.7703 20 7 2.5277 1.5087 -4.0550 21 6 1.6442 2.4025 -4.8078 22 6 1.6181 2.2525 -6.3303 23 6 2.3008 3.4647 -5.6919 24 1 -0.3633 -1.0240 0.0870 25 1 -0.3633 0.5873 0.8433 26 1 -0.3634 0.4367 -0.9302 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.5940 0.3756 3.5663 30 1 0.7102 2.6674 -4.3122 31 1 2.2580 1.4884 -6.7716 32 1 0.6672 2.4190 -6.8362 33 1 1.7985 4.4283 -5.7781 34 1 3.3900 3.4988 -5.7131 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061595393.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:19 Heat of formation + Delta-G solvation = 47.475618 kcal Electronic energy + Delta-G solvation = -18603.182764 eV Core-core repulsion = 15664.605736 eV Total energy + Delta-G solvation = -2938.577028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.48446 -38.74017 -38.08151 -36.75809 -33.96184 -33.35396 -31.46307 -29.00710 -25.83985 -25.31675 -24.34280 -23.33012 -22.04179 -21.70064 -20.06213 -18.24100 -17.76631 -17.42221 -17.16319 -16.99332 -16.63069 -15.67855 -15.51891 -15.09346 -14.62452 -14.42534 -14.10546 -13.82395 -13.05425 -12.98190 -12.78387 -12.70545 -12.55454 -12.45791 -12.31855 -11.94439 -11.73884 -11.60251 -11.26883 -11.11637 -11.06406 -10.85872 -10.45463 -9.94682 -8.58423 -8.13454 -6.29768 0.15180 0.66892 0.82318 1.42137 1.50658 1.51066 1.56289 1.63985 2.45389 2.52956 2.74960 3.17205 3.44810 3.72156 3.88250 3.94788 4.46042 4.56494 4.68218 4.71162 4.74227 4.75903 4.93557 5.14298 5.22667 5.32941 5.34403 5.39307 5.66442 5.68505 5.72270 5.91813 6.10937 6.33967 6.71919 6.95254 7.36656 8.91232 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.032616 B = 0.005407 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.260227 B = 5177.448333 C = 5552.998634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C 0.088 3.912 4 H 0.029 0.971 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.035 3.965 8 N -0.906 5.906 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.270 1.270 13 S 0.015 5.985 14 C 0.262 3.738 15 N -0.301 5.301 16 N -0.541 5.541 17 H 0.462 0.538 18 C 0.644 3.356 19 O -0.581 6.581 20 N -0.508 5.508 21 C 0.049 3.951 22 C -0.169 4.169 23 C -0.166 4.166 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.266 0.734 30 H 0.165 0.835 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 3.429 -11.025 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C -0.041 4.041 4 H 0.047 0.953 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.168 4.168 8 N -0.543 5.543 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.196 1.196 13 S 0.244 5.756 14 C -0.123 4.123 15 N -0.132 5.132 16 N -0.292 5.292 17 H 0.312 0.688 18 C 0.341 3.659 19 O -0.459 6.459 20 N -0.236 5.236 21 C -0.054 4.054 22 C -0.207 4.207 23 C -0.204 4.204 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.182 0.818 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.636 3.631 -11.185 12.308 hybrid contribution 1.168 -0.964 0.622 1.637 sum -2.468 2.666 -10.563 11.170 Atomic orbital electron populations 1.21621 0.95460 0.99790 1.01700 1.21525 0.96518 0.96207 1.00189 1.21061 0.98524 0.95557 0.88926 0.95277 1.20684 1.33170 1.12733 0.89588 0.91307 1.25542 0.94983 0.95495 1.00757 1.70002 1.37925 1.24203 1.22219 0.85582 0.79220 0.78744 0.78030 1.19076 1.21247 1.19552 1.85334 1.47043 1.44417 0.98849 1.26620 0.99508 0.98776 0.87351 1.77786 1.12891 1.16049 1.06427 1.46672 1.38578 1.41252 1.02727 0.68796 1.16894 0.81693 0.81656 0.85673 1.90976 1.70587 1.71628 1.12707 1.45271 1.35251 1.38482 1.04551 1.22261 0.95258 0.96496 0.91351 1.23709 1.04780 1.00879 0.91311 1.23476 1.00320 0.95528 1.01060 0.94031 0.92972 0.92589 0.95040 0.91145 0.92492 0.81791 0.88005 0.84371 0.84010 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.44 71.98 0.68 -4.41 16 2 C -0.10 -4.67 5.30 30.59 0.16 -4.51 16 3 C 0.09 4.05 1.95 29.85 0.06 4.11 16 4 H 0.03 1.53 7.98 -2.40 -0.02 1.51 16 5 C -0.52 -25.43 7.02 25.60 0.18 -25.25 16 6 H 0.07 3.25 7.71 -2.92 -0.02 3.23 16 7 C 0.04 1.74 5.30 84.66 0.45 2.19 16 8 N -0.91 -47.99 11.37 21.45 0.24 -47.75 16 9 Si 0.96 39.64 29.54 68.60 2.03 41.66 16 10 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 11 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 13 S 0.01 0.54 19.96 -56.49 -1.13 -0.59 16 14 C 0.26 9.60 7.61 179.50 1.37 10.97 16 15 N -0.30 -11.66 10.60 -56.74 -0.60 -12.27 16 16 N -0.54 -18.15 7.39 -184.36 -1.36 -19.52 16 17 H 0.46 12.58 8.96 -213.27 -1.91 10.66 16 18 C 0.64 22.60 8.85 179.01 1.58 24.18 16 19 O -0.58 -21.70 15.12 -4.78 -0.07 -21.77 16 20 N -0.51 -16.65 3.08 -633.52 -1.95 -18.61 16 21 C 0.05 1.22 6.58 44.99 0.30 1.51 16 22 C -0.17 -3.67 9.85 30.62 0.30 -3.37 16 23 C -0.17 -3.46 10.38 30.62 0.32 -3.14 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 2.22 6.90 -2.39 -0.02 2.20 16 26 H 0.06 2.01 7.29 -2.39 -0.02 1.99 16 27 H 0.03 1.36 6.44 -2.39 -0.02 1.35 16 28 H 0.07 3.59 6.21 -2.39 -0.01 3.57 16 29 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 30 H 0.16 3.46 7.93 -2.38 -0.02 3.44 16 31 H 0.10 2.86 5.53 -2.39 -0.01 2.85 16 32 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -58.62 296.49 1.77 -56.85 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.78 Total: 19.70 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.39 Total: 2.28 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -3.67 Total: -98.14 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.07 Total: -21.77 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -1.13 Total: -0.59 kcal Total: -58.62 1.77 -56.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061595393.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.324 kcal (2) G-P(sol) polarization free energy of solvation -58.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds