Wall clock time and date at job start Mon Mar 30 2020 04:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47051 * 2 1 4 4 C 1.50697 * 109.47197 * 240.00227 * 2 1 3 5 5 H 1.08005 * 120.00372 * 239.99923 * 4 2 1 6 6 C 1.37881 * 120.00119 * 60.00165 * 4 2 1 7 7 N 1.31513 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00096 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47255 * 59.99362 * 8 6 4 10 10 H 1.48491 * 109.47225 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46973 * 299.99727 * 8 6 4 12 12 N 1.46495 * 109.47353 * 120.00001 * 2 1 3 13 13 C 1.46508 * 119.99942 * 59.99863 * 12 2 1 14 14 C 1.34778 * 120.00338 * 240.00439 * 12 2 1 15 15 O 1.21276 * 119.99998 * 359.97438 * 14 12 2 16 16 C 1.50700 * 120.00090 * 180.02562 * 14 12 2 17 17 C 1.50697 * 109.47155 * 179.97438 * 16 14 12 18 18 C 1.33331 * 122.70960 * 124.99476 * 17 16 14 19 19 S 1.76173 * 108.09210 * 179.74725 * 18 17 16 20 20 C 1.70963 * 90.35554 * 0.30248 * 19 18 17 21 21 N 1.38615 * 124.94621 * 179.97438 * 20 19 18 22 22 N 1.29682 * 110.10566 * 359.69192 * 20 19 18 23 23 H 1.08999 * 109.47723 * 299.99762 * 1 2 3 24 24 H 1.08998 * 109.47488 * 60.00012 * 1 2 3 25 25 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 26 26 H 0.97006 * 119.99822 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47241 * 270.00189 * 13 12 2 28 28 H 1.09000 * 109.46635 * 30.00373 * 13 12 2 29 29 H 1.09000 * 109.47049 * 150.00009 * 13 12 2 30 30 H 1.09000 * 109.47413 * 59.99317 * 16 14 12 31 31 H 1.09002 * 109.46590 * 299.99796 * 16 14 12 32 32 H 1.07996 * 125.95102 * 359.97438 * 18 17 16 33 33 H 0.96996 * 120.00232 * 179.69779 * 21 20 19 34 34 H 0.97004 * 119.99644 * 359.42366 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8260 -0.4204 -5.2204 11 1 3.8064 -1.1207 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0833 15 8 3.0864 1.1254 1.8913 16 6 3.2959 -0.7462 3.3135 17 6 4.1335 0.2008 4.1336 18 6 3.8850 0.4541 5.4188 19 16 5.0940 1.5989 5.9945 20 6 5.8144 1.6339 4.4445 21 7 6.9255 2.3887 4.1022 22 7 5.1736 0.8469 3.6372 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7081 1.1610 -3.4844 27 1 0.7376 -2.1444 1.9993 28 1 1.5295 -2.5968 0.4707 29 1 2.4628 -2.5819 1.9863 30 1 3.9016 -1.6024 3.0165 31 1 2.4483 -1.0892 3.9068 32 1 3.0845 0.0285 6.0057 33 1 7.2782 2.3508 3.1994 34 1 7.3479 2.9579 4.7645 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063092841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:20 Heat of formation + Delta-G solvation = 16.837050 kcal Electronic energy + Delta-G solvation = -18334.346091 eV Core-core repulsion = 15394.440475 eV Total energy + Delta-G solvation = -2939.905616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.87897 -38.49417 -35.27025 -34.68505 -32.82571 -30.93259 -29.23433 -27.46507 -25.93965 -25.15276 -23.67527 -21.28045 -19.98583 -18.66862 -17.65128 -16.58531 -16.22784 -16.14770 -15.95148 -15.23693 -14.56666 -14.38101 -14.20335 -13.60255 -12.89861 -12.71200 -12.60410 -12.31414 -11.73623 -11.63650 -11.40611 -11.21887 -10.99905 -10.80320 -10.64683 -10.59000 -10.19035 -10.10383 -9.34960 -9.12542 -9.02244 -8.78197 -8.35808 -7.75868 -7.46275 -6.01195 -4.08757 1.15154 1.27821 1.87568 3.13796 3.31527 3.36404 3.38308 3.47974 3.57349 4.14993 4.45788 4.79306 5.28849 5.29974 5.38737 5.52537 5.64034 5.83270 5.92790 6.11431 6.24570 6.44097 6.82320 6.90140 6.92555 7.14473 7.27989 7.53199 7.62306 7.79073 8.09909 8.23082 8.27996 8.64449 8.91218 9.21526 9.57600 11.04056 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.004553 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.196728 B = 6148.568624 C = 6563.958821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.598 5.598 13 C 0.083 3.917 14 C 0.509 3.491 15 O -0.534 6.534 16 C -0.070 4.070 17 C 0.146 3.854 18 C -0.300 4.300 19 S 0.065 5.935 20 C 0.322 3.678 21 N -0.822 5.822 22 N -0.515 5.515 23 H 0.010 0.990 24 H 0.092 0.908 25 H 0.029 0.971 26 H 0.263 0.737 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.412 0.588 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.866 -2.248 16.447 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.330 5.330 13 C -0.061 4.061 14 C 0.294 3.706 15 O -0.410 6.410 16 C -0.113 4.113 17 C 0.014 3.986 18 C -0.440 4.440 19 S 0.312 5.688 20 C -0.052 4.052 21 N -0.375 5.375 22 N -0.239 5.239 23 H 0.029 0.971 24 H 0.110 0.890 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.191 0.809 33 H 0.244 0.756 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.296 -1.079 16.579 18.145 hybrid contribution 0.050 -0.893 -1.500 1.747 sum 7.346 -1.972 15.079 16.889 Atomic orbital electron populations 1.22072 0.98328 0.99297 1.00670 1.18877 0.90711 0.94515 0.79975 0.92049 1.21303 1.31635 1.12935 0.90371 0.92335 1.24893 0.95003 0.94999 0.98918 1.69878 1.36428 1.22667 1.23737 0.86563 0.79235 0.79554 0.82062 1.20255 1.21222 1.20287 1.48204 1.49555 1.11550 1.23699 1.21595 0.98651 0.83500 1.02328 1.20023 0.79320 0.87297 0.83947 1.90672 1.57098 1.16957 1.76321 1.20370 0.98574 0.97122 0.95251 1.19270 0.92384 0.96412 0.90552 1.26082 1.08346 1.10270 0.99327 1.83631 1.26411 1.46093 1.12703 1.23504 0.93355 0.95286 0.93056 1.41486 1.30009 1.49216 1.16742 1.66147 1.10780 1.13024 1.33991 0.97109 0.88966 0.95216 0.92719 0.93983 0.90188 0.92870 0.87730 0.87919 0.80946 0.75571 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.97 37.15 0.33 -3.24 16 2 C 0.26 6.85 2.64 -69.09 -0.18 6.67 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.50 7.99 -34.44 -0.28 -14.78 16 5 H 0.06 1.59 7.33 -52.48 -0.38 1.20 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.60 -13.15 2.75 -175.27 -0.48 -13.63 16 13 C 0.08 1.41 9.24 59.85 0.55 1.96 16 14 C 0.51 11.09 7.64 -10.98 -0.08 11.00 16 15 O -0.53 -14.06 14.77 5.56 0.08 -13.98 16 16 C -0.07 -1.12 4.74 -29.04 -0.14 -1.26 16 17 C 0.15 2.43 5.63 -84.18 -0.47 1.95 16 18 C -0.30 -4.07 11.04 29.02 0.32 -3.75 16 19 S 0.07 0.78 23.22 -107.50 -2.50 -1.72 16 20 C 0.32 4.68 8.58 -87.68 -0.75 3.92 16 21 N -0.82 -8.70 9.08 29.77 0.27 -8.43 16 22 N -0.52 -9.39 9.74 -11.36 -0.11 -9.50 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 25 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 29 H 0.05 0.72 6.44 -51.93 -0.33 0.38 16 30 H 0.10 1.49 7.40 -51.93 -0.38 1.11 16 31 H 0.10 1.28 7.99 -51.93 -0.41 0.86 16 32 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.41 4.28 8.95 -40.82 -0.37 3.91 16 34 H 0.41 2.86 8.95 -40.82 -0.37 2.49 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -35.07 300.89 -7.48 -42.55 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.09 Total: 4.68 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -0.79 Total: 4.17 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.30 Total: -56.64 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.50 Total: -1.72 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.07 -7.48 -42.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063092841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.387 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds