Wall clock time and date at job start Mon Mar 30 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 110.65357 * 2 1 4 4 C 1.51582 * 110.76639 * 237.18815 * 2 1 3 5 5 O 1.21236 * 127.16148 * 61.63271 * 4 2 1 6 6 N 1.34772 * 105.68488 * 241.71644 * 4 2 1 7 7 C 1.33792 * 111.64131 * 359.65239 * 6 4 2 8 8 O 1.21536 * 123.77049 * 180.23189 * 7 6 4 9 9 N 1.34530 * 112.45897 * 0.23433 * 7 6 4 10 10 C 1.46501 * 126.68903 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47398 * 90.02620 * 10 9 7 12 12 O 1.21288 * 119.99818 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00270 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99847 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46683 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99699 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99890 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00055 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47291 * 90.00184 * 19 17 15 21 21 H 1.48501 * 109.47358 * 210.00463 * 19 17 15 22 22 H 1.48509 * 109.47269 * 330.00372 * 19 17 15 23 23 H 1.09001 * 109.47381 * 297.08285 * 1 2 3 24 24 H 1.08996 * 109.47255 * 57.08821 * 1 2 3 25 25 H 1.09008 * 109.46901 * 177.08247 * 1 2 3 26 26 H 1.08995 * 109.47342 * 182.91109 * 3 2 1 27 27 H 1.09001 * 109.47692 * 302.91424 * 3 2 1 28 28 H 1.09009 * 109.47191 * 62.91383 * 3 2 1 29 29 H 0.97001 * 124.18199 * 179.97438 * 6 4 2 30 30 H 1.08997 * 109.46978 * 210.02768 * 10 9 7 31 31 H 1.09003 * 109.46975 * 330.02614 * 10 9 7 32 32 H 0.97000 * 119.99805 * 0.02562 * 13 11 10 33 33 H 1.08997 * 109.47599 * 300.00313 * 14 13 11 34 34 H 1.08998 * 109.46624 * 60.00757 * 14 13 11 35 35 H 0.97001 * 119.99903 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 6 2.0675 -0.7680 -1.1912 5 8 1.8979 -0.5128 -2.3642 6 7 2.7715 -1.7948 -0.6752 7 6 2.7600 -1.7781 0.6626 8 8 3.3288 -2.6004 1.3535 9 7 2.0483 -0.7493 1.1575 10 6 1.8307 -0.4356 2.5720 11 6 2.9244 0.4805 3.0574 12 8 3.7997 0.8361 2.2968 13 7 2.9298 0.9047 4.3366 14 6 3.9933 1.7949 4.8086 15 6 3.7694 2.1176 6.2635 16 1 2.9202 1.7010 6.7845 17 6 4.6488 2.9448 6.9294 18 7 4.4532 3.2269 8.1990 19 14 6.1181 3.6649 6.0284 20 1 5.7387 4.9673 5.4242 21 1 7.2344 3.8700 6.9861 22 1 6.5496 2.7299 4.9583 23 1 -0.3634 0.4679 0.9150 24 1 -0.3633 0.5584 -0.8627 25 1 -0.3633 -1.0264 -0.0523 26 1 3.1581 1.4096 -0.0522 27 1 1.6753 1.9686 -0.8627 28 1 1.7599 1.9367 0.9150 29 1 3.2337 -2.4609 -1.2078 30 1 0.8653 0.0562 2.6907 31 1 1.8432 -1.3569 3.1545 32 1 2.2299 0.6201 4.9449 33 1 4.9585 1.3025 4.6904 34 1 3.9814 2.7160 4.2258 35 1 5.0721 3.8085 8.6675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070508290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:48 Heat of formation + Delta-G solvation = -78.050075 kcal Electronic energy + Delta-G solvation = -20991.641422 eV Core-core repulsion = 17604.868320 eV Total energy + Delta-G solvation = -3386.773101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.63616 -39.19991 -38.62627 -36.73274 -35.00484 -34.34256 -32.57313 -32.26261 -29.08693 -27.74775 -27.14558 -24.51997 -22.70421 -21.38868 -20.95859 -19.96449 -18.29711 -17.60228 -16.74975 -16.60638 -16.04528 -15.96509 -15.82053 -14.89640 -14.68651 -14.51838 -14.37289 -13.95796 -13.51738 -13.06492 -12.90887 -12.81957 -12.48412 -12.38869 -12.37034 -11.85517 -11.64693 -11.07838 -10.93986 -10.80724 -10.51814 -10.30730 -10.02865 -9.88481 -9.54061 -8.89069 -8.82987 -8.25756 -6.25968 -4.28675 1.42713 2.01155 2.76627 2.90146 3.04143 3.23095 3.30448 3.38498 3.75668 3.89046 4.29245 4.30440 4.53092 4.75735 5.09417 5.10577 5.18051 5.22853 5.24221 5.40660 5.53219 5.64549 5.66916 5.83674 6.09303 6.16860 6.72956 6.88552 7.00424 7.10665 7.17581 7.32068 7.96345 8.06047 8.41570 8.67663 8.80252 9.33774 10.85897 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032202 B = 0.004433 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.291756 B = 6315.026865 C = 6386.858175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.119 3.881 3 C -0.141 4.141 4 C 0.538 3.462 5 O -0.471 6.471 6 N -0.679 5.679 7 C 0.707 3.293 8 O -0.539 6.539 9 N -0.596 5.596 10 C 0.130 3.870 11 C 0.479 3.521 12 O -0.544 6.544 13 N -0.701 5.701 14 C 0.222 3.778 15 C -0.545 4.545 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.891 5.891 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.430 0.570 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.398 0.602 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.045 -6.974 -15.762 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 C -0.199 4.199 4 C 0.323 3.677 5 O -0.340 6.340 6 N -0.349 5.349 7 C 0.408 3.592 8 O -0.412 6.412 9 N -0.334 5.334 10 C 0.005 3.995 11 C 0.262 3.738 12 O -0.422 6.422 13 N -0.351 5.351 14 C 0.100 3.900 15 C -0.583 4.583 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.528 5.528 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.186 1.186 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.272 0.728 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.231 0.769 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.186 -6.801 -16.190 19.818 hybrid contribution 0.813 0.019 -0.147 0.826 sum -8.373 -6.781 -16.337 19.570 Atomic orbital electron populations 1.21981 0.90143 1.03601 1.04546 1.21556 0.96981 0.95023 0.83369 1.21970 1.03205 0.91047 1.03649 1.20758 0.76913 0.80231 0.89768 1.90810 1.57461 1.69119 1.16614 1.44322 1.51480 1.30387 1.08695 1.15755 0.79503 0.82450 0.81451 1.91028 1.47690 1.41911 1.60559 1.47171 1.53334 1.27415 1.05500 1.21208 0.98807 1.01321 0.78191 1.20909 0.87398 0.82198 0.83269 1.90666 1.38353 1.58000 1.55194 1.46147 1.29993 1.49014 1.09908 1.19499 0.86417 0.88782 0.95296 1.21075 1.13184 1.31133 0.92904 0.90158 1.24785 0.97596 0.95421 0.94721 1.69874 1.37525 1.36272 1.09148 0.86831 0.82552 0.80280 0.80096 1.19857 1.20856 1.18564 0.90065 0.89687 0.91469 0.90388 0.90499 0.90347 0.72772 0.86732 0.86374 0.76865 0.95682 0.96114 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.80 37.16 0.33 -0.70 16 2 C 0.12 1.24 1.14 -132.10 -0.15 1.09 16 3 C -0.14 -1.58 7.56 37.15 0.28 -1.30 16 4 C 0.54 6.14 7.48 -10.55 -0.08 6.06 16 5 O -0.47 -6.16 18.02 5.60 0.10 -6.06 16 6 N -0.68 -7.63 5.70 -15.79 -0.09 -7.72 16 7 C 0.71 9.91 8.68 -88.02 -0.76 9.15 16 8 O -0.54 -9.41 17.71 5.33 0.09 -9.32 16 9 N -0.60 -7.32 2.00 -166.46 -0.33 -7.65 16 10 C 0.13 1.51 6.33 -5.20 -0.03 1.48 16 11 C 0.48 8.15 7.47 -10.99 -0.08 8.07 16 12 O -0.54 -11.28 14.69 5.55 0.08 -11.20 16 13 N -0.70 -12.90 5.55 -61.47 -0.34 -13.24 16 14 C 0.22 5.21 4.50 -5.19 -0.02 5.19 16 15 C -0.55 -14.43 9.83 -34.44 -0.34 -14.77 16 16 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 19 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 23 H 0.08 0.47 7.43 -51.93 -0.39 0.08 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.08 1.09 7.53 -51.93 -0.39 0.70 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.89 7.87 -51.92 -0.41 0.49 16 29 H 0.43 3.84 8.96 -40.82 -0.37 3.47 16 30 H 0.11 0.88 7.36 -51.93 -0.38 0.49 16 31 H 0.12 1.26 8.03 -51.93 -0.42 0.84 16 32 H 0.40 6.20 8.32 -40.82 -0.34 5.86 16 33 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 34 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -34.74 303.96 -5.06 -39.80 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.30 Total: 3.23 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: -0.96 Total: 16.36 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.01 Total: -53.80 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: 0.28 Total: -26.58 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.74 -5.06 -39.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070508290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.246 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds