Wall clock time and date at job start Mon Mar 30 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 110.65357 * 2 1 4 4 C 1.51582 * 110.76639 * 237.18815 * 2 1 3 5 5 O 1.21236 * 127.16148 * 61.63271 * 4 2 1 6 6 N 1.34772 * 105.68488 * 241.71644 * 4 2 1 7 7 C 1.33792 * 111.64131 * 359.65239 * 6 4 2 8 8 O 1.21536 * 123.77049 * 180.23189 * 7 6 4 9 9 N 1.34530 * 112.45897 * 0.23433 * 7 6 4 10 10 C 1.46501 * 126.68903 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47398 * 90.02620 * 10 9 7 12 12 O 1.21288 * 119.99818 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00270 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99847 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46683 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99699 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99890 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00055 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47291 * 90.00184 * 19 17 15 21 21 H 1.48501 * 109.47358 * 210.00463 * 19 17 15 22 22 H 1.48509 * 109.47269 * 330.00372 * 19 17 15 23 23 H 1.09001 * 109.47381 * 297.08285 * 1 2 3 24 24 H 1.08996 * 109.47255 * 57.08821 * 1 2 3 25 25 H 1.09008 * 109.46901 * 177.08247 * 1 2 3 26 26 H 1.08995 * 109.47342 * 182.91109 * 3 2 1 27 27 H 1.09001 * 109.47692 * 302.91424 * 3 2 1 28 28 H 1.09009 * 109.47191 * 62.91383 * 3 2 1 29 29 H 0.97001 * 124.18199 * 179.97438 * 6 4 2 30 30 H 1.08997 * 109.46978 * 210.02768 * 10 9 7 31 31 H 1.09003 * 109.46975 * 330.02614 * 10 9 7 32 32 H 0.97000 * 119.99805 * 0.02562 * 13 11 10 33 33 H 1.08997 * 109.47599 * 300.00313 * 14 13 11 34 34 H 1.08998 * 109.46624 * 60.00757 * 14 13 11 35 35 H 0.97001 * 119.99903 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 6 2.0675 -0.7680 -1.1912 5 8 1.8979 -0.5128 -2.3642 6 7 2.7715 -1.7948 -0.6752 7 6 2.7600 -1.7781 0.6626 8 8 3.3288 -2.6004 1.3535 9 7 2.0483 -0.7493 1.1575 10 6 1.8307 -0.4356 2.5720 11 6 2.9244 0.4805 3.0574 12 8 3.7997 0.8361 2.2968 13 7 2.9298 0.9047 4.3366 14 6 3.9933 1.7949 4.8086 15 6 3.7694 2.1176 6.2635 16 1 2.9202 1.7010 6.7845 17 6 4.6488 2.9448 6.9294 18 7 4.4532 3.2269 8.1990 19 14 6.1181 3.6649 6.0284 20 1 5.7387 4.9673 5.4242 21 1 7.2344 3.8700 6.9861 22 1 6.5496 2.7299 4.9583 23 1 -0.3634 0.4679 0.9150 24 1 -0.3633 0.5584 -0.8627 25 1 -0.3633 -1.0264 -0.0523 26 1 3.1581 1.4096 -0.0522 27 1 1.6753 1.9686 -0.8627 28 1 1.7599 1.9367 0.9150 29 1 3.2337 -2.4609 -1.2078 30 1 0.8653 0.0562 2.6907 31 1 1.8432 -1.3569 3.1545 32 1 2.2299 0.6201 4.9449 33 1 4.9585 1.3025 4.6904 34 1 3.9814 2.7160 4.2258 35 1 5.0721 3.8085 8.6675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070508290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:48 Heat of formation + Delta-G solvation = -106.468362 kcal Electronic energy + Delta-G solvation = -20992.873731 eV Core-core repulsion = 17604.868320 eV Total energy + Delta-G solvation = -3388.005411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.60448 -40.53133 -39.75971 -37.78422 -36.22941 -35.83561 -34.40836 -33.32601 -30.59879 -28.58800 -28.45205 -25.45275 -24.37436 -22.71849 -21.89346 -21.34341 -19.37084 -19.12579 -18.07083 -17.70531 -17.33859 -17.18079 -16.97509 -16.33827 -16.13968 -15.71183 -15.46950 -15.29860 -14.74169 -14.42593 -14.35317 -14.05414 -13.64585 -13.51342 -13.15515 -13.05404 -12.84066 -12.66621 -12.55175 -11.99037 -11.95193 -11.63744 -11.54609 -11.29080 -11.16745 -10.90672 -10.06123 -9.90561 -8.38879 -6.44963 0.46532 1.05543 1.31673 1.35425 1.46598 1.70027 1.85248 1.88178 2.28028 2.56340 2.85981 2.97068 3.51042 3.73993 3.89621 3.95050 4.31666 4.48641 4.58593 4.65394 4.75556 4.80462 4.85205 4.97697 5.05184 5.11372 5.18333 5.25074 5.29484 5.53483 5.89381 6.09846 6.24971 6.57057 6.83221 6.97494 7.17546 7.41989 8.75740 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032202 B = 0.004433 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.291756 B = 6315.026865 C = 6386.858175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.120 3.880 3 C -0.136 4.136 4 C 0.540 3.460 5 O -0.487 6.487 6 N -0.672 5.672 7 C 0.703 3.297 8 O -0.579 6.579 9 N -0.594 5.594 10 C 0.137 3.863 11 C 0.477 3.523 12 O -0.583 6.583 13 N -0.700 5.700 14 C 0.234 3.766 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.028 3.972 18 N -0.931 5.931 19 Si 0.933 3.067 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.438 0.562 30 H 0.167 0.833 31 H 0.134 0.866 32 H 0.412 0.588 33 H 0.004 0.996 34 H 0.015 0.985 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.566 -6.939 -16.917 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 C -0.194 4.194 4 C 0.327 3.673 5 O -0.357 6.357 6 N -0.341 5.341 7 C 0.404 3.596 8 O -0.455 6.455 9 N -0.331 5.331 10 C 0.013 3.987 11 C 0.263 3.737 12 O -0.464 6.464 13 N -0.351 5.351 14 C 0.110 3.890 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.172 4.172 18 N -0.570 5.570 19 Si 0.758 3.242 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.190 1.190 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.282 0.718 30 H 0.184 0.816 31 H 0.152 0.848 32 H 0.249 0.751 33 H 0.022 0.978 34 H 0.033 0.967 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.753 -6.772 -17.370 21.522 hybrid contribution 1.262 -0.018 0.181 1.275 sum -9.490 -6.789 -17.189 20.776 Atomic orbital electron populations 1.22040 0.86795 1.04691 1.06227 1.21775 0.99264 0.93832 0.81934 1.21918 1.01039 0.91866 1.04591 1.20935 0.76466 0.80062 0.89845 1.90809 1.58059 1.69499 1.17348 1.44237 1.51255 1.30671 1.07977 1.15963 0.79177 0.82484 0.81928 1.90999 1.49396 1.43565 1.61568 1.47332 1.52639 1.26885 1.06244 1.21385 0.98502 1.01007 0.77838 1.21873 0.87988 0.81796 0.82031 1.90661 1.40268 1.59429 1.56027 1.45944 1.29365 1.48729 1.11098 1.19043 0.87173 0.89287 0.93480 1.21314 1.12312 1.30246 0.94272 0.91781 1.25544 1.00230 0.96100 0.95348 1.69974 1.38900 1.37525 1.10566 0.85921 0.79675 0.79730 0.78903 1.18763 1.20179 1.18973 0.87952 0.88535 0.90643 0.93779 0.88502 0.90310 0.71800 0.81585 0.84792 0.75144 0.97789 0.96744 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.80 71.98 0.63 -0.77 16 2 C 0.12 2.19 1.14 2.98 0.00 2.19 16 3 C -0.14 -2.79 7.56 71.98 0.54 -2.25 16 4 C 0.54 11.43 7.48 87.94 0.66 12.09 16 5 O -0.49 -11.96 18.02 -2.89 -0.05 -12.01 16 6 N -0.67 -14.38 5.70 -441.11 -2.52 -16.89 16 7 C 0.70 18.86 8.68 179.44 1.56 20.42 16 8 O -0.58 -19.92 17.71 -3.83 -0.07 -19.99 16 9 N -0.59 -13.20 2.00 -798.97 -1.59 -14.79 16 10 C 0.14 2.76 6.33 85.63 0.54 3.30 16 11 C 0.48 15.46 7.47 87.66 0.65 16.12 16 12 O -0.58 -23.90 14.69 -3.06 -0.04 -23.94 16 13 N -0.70 -24.89 5.55 -466.78 -2.59 -27.48 16 14 C 0.23 10.92 4.50 85.63 0.38 11.30 16 15 C -0.54 -28.81 9.83 25.60 0.25 -28.56 16 16 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 17 C 0.03 1.56 5.47 84.66 0.46 2.02 16 18 N -0.93 -54.53 13.96 21.45 0.30 -54.23 16 19 Si 0.93 43.47 27.47 68.60 1.88 45.35 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.42 6.54 99.48 0.65 -11.77 16 23 H 0.10 0.64 7.43 -2.39 -0.02 0.62 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.04 1.21 7.53 -2.39 -0.02 1.19 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.61 7.87 -2.38 -0.02 1.59 16 29 H 0.44 7.53 8.96 -92.71 -0.83 6.70 16 30 H 0.17 1.67 7.36 -2.39 -0.02 1.65 16 31 H 0.13 2.41 8.03 -2.39 -0.02 2.39 16 32 H 0.41 12.14 8.32 -92.71 -0.77 11.37 16 33 H 0.00 0.21 7.20 -2.39 -0.02 0.20 16 34 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 35 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -76.19 303.96 0.50 -75.70 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -0.52 Total: 12.44 kcal Atomic # 6 Polarization: 30.16 SS G_CDS: 5.69 Total: 35.85 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -6.40 Total: -113.40 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -0.16 Total: -55.95 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -76.19 0.50 -75.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070508290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.770 kcal (2) G-P(sol) polarization free energy of solvation -76.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds